View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7927_low_3 (Length: 506)
Name: NF7927_low_3
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 30408072 - 30408562
Alignment:
| Q |
1 |
taaaagttagttcatgtttctattatgacatggacaggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408072 |
taaaagttagttcatgtttctattatgacatggactggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtat |
30408171 |
T |
|
| Q |
101 |
cctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408172 |
cctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaag |
30408271 |
T |
|
| Q |
201 |
aaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtact |
300 |
Q |
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| T |
30408272 |
aaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacatgcaagctcctacgaaaccaggtact |
30408371 |
T |
|
| Q |
301 |
ggttttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacatagtgaatggttggtgagtgtcgcttacttttattttgaagttcggaaat |
400 |
Q |
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| T |
30408372 |
ggttttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacatagtgaatggttggtgagtgtcgcttacttttattttgaagttcggaaat |
30408471 |
T |
|
| Q |
401 |
atcaaattagtttatgaaccttgttttttgtggaaaattaaatagatggtgacaaatgagaattttgattttgactatgatgagactaatt |
491 |
Q |
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| T |
30408472 |
atcaaattagtttatgaaccttgttttttgtggaaaattaaatagatggtgacaaatgagaattttgattttgactatgatgagaataatt |
30408562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 30411002 - 30411370
Alignment:
| Q |
1 |
taaaagttagttcatgtttctattatgacatggacaggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtat |
100 |
Q |
| |
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||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||| ||||||| ||||| | ||||||| |||||||||| || |
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| T |
30411002 |
taaaagttagttcatttttctattatgatatgg------ttgaattcaaaggttgttggaagggaagaggatgttttgagtggtttaagcaacaaggcat |
30411095 |
T |
|
| Q |
101 |
cctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaag |
200 |
Q |
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| T |
30411096 |
cctcttcatctgtgcttctaacttcaaagactgagggtgagatattacaatgcaacaatttgaagtgtttcacattcaatgagctaaaaactgctacgac |
30411195 |
T |
|
| Q |
201 |
aaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtact |
300 |
Q |
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| T |
30411196 |
gtactttcatccaagcggtcaagtggatgaacgtgggtttggtagtgtctttaaggggtggatcgatgagcacacgctagctcctactaaacaaggtact |
30411295 |
T |
|
| Q |
301 |
ggttttgttgttgctgtgatgatgtttaacaatgaaagcaacca---ggaacatagtgaatggttggtgagtgtc |
372 |
Q |
| |
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|||| |||||||||||| | |||||||| ||| ||||||| ||| || ||| | ||||||||||||||||||| |
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| T |
30411296 |
ggttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaatgaatggttggtgagtgtc |
30411370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 34 - 369
Target Start/End: Original strand, 30421143 - 30421478
Alignment:
| Q |
34 |
acaggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtatcctcttcaactgttctgctaacttcaaggactg |
133 |
Q |
| |
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||||||||||||||| |||||||||| ||||| |||| ||||||| ||||||| || | | || || |||||| |||| || |||| || ||||| | |
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| T |
30421143 |
acaggtttgaattcaaaggttgttgggagagaggaggatgtttcgagtggtttaagtagaagggcctcttcttcatctgtgcttctaagctctaggaccg |
30421242 |
T |
|
| Q |
134 |
agggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacg |
233 |
Q |
| |
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||||||||||||| ||||| ||| |||||||||||||||| |||||||||||| | | |||||||| ||||||| |||| | || | | ||| | |
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| T |
30421243 |
agggtgagatattgcaatcaaactatttgaagtgtttcactatcaatgaggtaagagccgcgacaaggaactttcgtccagatagtatgattggcgaagg |
30421342 |
T |
|
| Q |
234 |
tggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaat |
333 |
Q |
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|||||||||| | ||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||| | || | ||||| | |
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| T |
30421343 |
tggatttggttgtgtatttaagggttggatcgatgagcacacactagctcctactaaaccaggtactggttttgttattgctgtcaagaggcttaaccaa |
30421442 |
T |
|
| Q |
334 |
gaaagcaaccaggaacatagtgaatggttggtgagt |
369 |
Q |
| |
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||||||| |||| |||||||||||||||||||||| |
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| T |
30421443 |
gaaagcagtcagggacatagtgaatggttggtgagt |
30421478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 418
Target Start/End: Original strand, 30404272 - 30404670
Alignment:
| Q |
21 |
tattatgacatggacaggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtatcctcttcaactgttctgcta |
120 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||| ||| |||| | | |||||||| ||| | ||| |
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| T |
30404272 |
tattctgacatggacaggtttgaatttgatagttgttgggagagaagaggaagtttcgagtggtttaagctacaaagcagcctcttcatttgtgcctcta |
30404371 |
T |
|
| Q |
121 |
acttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaactttcatccaagtggtg |
220 |
Q |
| |
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||||| |||||||||| |||| |||| | |||||||||||||| ||||||||| |||| ||||||| | | || ||||| |||||||||||| | || |
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| T |
30404372 |
acttctaggactgaggatgaggtattgcgatccaacaatttgacgtgtttcactatcaacgaggtaagagccgcaacaaggaactttcatccagatagta |
30404471 |
T |
|
| Q |
221 |
aactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgat |
320 |
Q |
| |
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| | || ||||||||||| | ||||| ||||| ||||||||||||||||| | ||| || || |||| |||||||||||||| ||| |||||| |
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| T |
30404472 |
tgattggcaaaggtggatttggttgtgtatttaagggttggatcgatgagcacacactagccccgactaaacaaggtactggttttgccgtttctgtgaa |
30404571 |
T |
|
| Q |
321 |
gatgtttaacaatgaaagcaaccaggaacatagtgaatggttggtgagtgtcgcttacttttattttgaagttcgg-aaatatcaaattagtttatgaa |
418 |
Q |
| |
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|| | | ||| || ||||||| |||| |||||||||||||||||| |||||| ||| ||| ||||||||| || ||||| |||||||||||||||| |
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| T |
30404572 |
gaggctcaacgataaaagcaatcagggacatagtgaatggttggtaagtgtcatttaatttctgtttgaagttaggaaaataacaaattagtttatgaa |
30404670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 369
Target Start/End: Original strand, 30401136 - 30401252
Alignment:
| Q |
253 |
aaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacata |
352 |
Q |
| |
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|||||||||||||||||||||||| || || || ||||||||| ||||||| ||||||||||| || | ||||||||| ||| ||||||||| | |
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| T |
30401136 |
aaggggtggatcgatgagcacacgttaggccccactaaaccaggttctggtttgactgttgctgtgaagaagcttaacaatgcgagccaccaggaaccca |
30401235 |
T |
|
| Q |
353 |
gtgaatggttggtgagt |
369 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
30401236 |
gtgaatggttggtgagt |
30401252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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