View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7927_low_4 (Length: 432)
Name: NF7927_low_4
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 35393019 - 35392606
Alignment:
| Q |
1 |
tgtatttctccgacgtgaagaactaagattgaaatttcaattgnnnnnnnnnnnnttatgttgtctacatatcaacattacattaggaggagtcggactg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35393019 |
tgtatttctccgacgtgaagtactaagattgaaatttcaattgaaaaacaaaaaattatgttgtctacatatcaacattacattaggaggagtcggactg |
35392920 |
T |
|
| Q |
101 |
aaatccgatttcttaagcaaggtctcgtgtacgagtattgtagaccaacaaaatgtagttaagagggaagcctccactccactcaactctcaaggtggcc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
35392919 |
aaatctgatttcttaagcaaggtctcgtgtacgagtattgtagaccaacaaaatgtagttaagagggaagactccactccactcaactcttaaggtggct |
35392820 |
T |
|
| Q |
201 |
gccaactagaatcctttgcagaaattattcatcgacaaaagtgatggatactccacatcaataacacagttactgcatgcattttaggcaagctttcaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35392819 |
gccaactagaatcctttgcagaaattattcatcgacaaaagtgatggatactccacatcaataacacagttactgcatgcattttaggcaagctttcaga |
35392720 |
T |
|
| Q |
301 |
atcattaatgtgaccaacacaaataaaagaactcaagaaattagactacaaggttttactttcttgcagatgaaggaacattttcccctaaggtggattt |
400 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35392719 |
aacattaatgtgaccaacacaaataaaagaactcaagcaattagactacaaggttttactttcttgcagatgaaggaacattttcccctaaggtggattt |
35392620 |
T |
|
| Q |
401 |
tccccggttcagaa |
414 |
Q |
| |
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||| |||||||||| |
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| T |
35392619 |
tcctcggttcagaa |
35392606 |
T |
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