View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7927_low_5 (Length: 416)
Name: NF7927_low_5
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_low_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 56 - 398
Target Start/End: Original strand, 47285327 - 47285669
Alignment:
| Q |
56 |
gggaagcaacatgaagctaagttctcaaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccac |
155 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
47285327 |
gggaagcaacatgaagctaagctctcaaataaacattacaaattgagcatgcataatatatattaattatcaacaaactcatgtttaacttttaccccac |
47285426 |
T |
|
| Q |
156 |
ttagaggaggagcagaggcgctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgt |
255 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
47285427 |
ttagaggaggagcacaggcgcttatattttgagtatcataactgaaagaaggagcatgcgactgatcaataaaagcaatgacagaaacaagagtagttgt |
47285526 |
T |
|
| Q |
256 |
tccatcatcgagcttttgaatctggagatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgactt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47285527 |
tccatcatcgagcttttgaatctggagatatggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgactt |
47285626 |
T |
|
| Q |
356 |
gatgcatgagcagcgaatttctgtgatgttgctattactttgt |
398 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285627 |
gatacatgagcagcgaatttctgtgatgttgctattactttgt |
47285669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 70 - 398
Target Start/End: Original strand, 47306901 - 47307226
Alignment:
| Q |
70 |
agctaagttctcaaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagca |
169 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| |||||||||| |||| ||||||| | ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
47306901 |
agctaagctctcaaataaacattataaattgagcaagcataatataaattagttatcagcaggctccaatttaactttgaccccacttagaggaggagca |
47307000 |
T |
|
| Q |
170 |
gaggcgctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagct |
269 |
Q |
| |
|
| || |||||||| ||| ||| |||||| | |||| |||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
47307001 |
ggcgcactcatattatgattattataacttacagaaacagcatgtgactggtcaacagaagcaatg---ggaacaaaagtagttgttccatcattgagct |
47307097 |
T |
|
| Q |
270 |
ttt-gaatctggagatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatgcatgagcag |
368 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||||| || |
|
|
| T |
47307098 |
tttggaatc-ggagatctggtctctttcggatcctagacatgtatctcttttttttctcttcttcactttctgacttgtagtgtattgatgcatgactag |
47307196 |
T |
|
| Q |
369 |
cgaatttctgtgatgttgctattactttgt |
398 |
Q |
| |
|
| ||||| ||||||||||||| |||||||| |
|
|
| T |
47307197 |
caaatttttgtgatgttgctagtactttgt |
47307226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 82 - 397
Target Start/End: Original strand, 2589401 - 2589715
Alignment:
| Q |
82 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
181 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||| || ||| ||||| |||||| || || | ||||||| || |||||| |
|
|
| T |
2589401 |
aaataaatattacaaattgagcatgcataatatattttaattatttgtgg-ctccaatttaatttttactccgtataccgaaggagcaagggaactcata |
2589499 |
T |
|
| Q |
182 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
281 |
Q |
| |
|
|||||| |||||||| ||| ||| |||||| || ||||||| |||||||| || ||||||| ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
2589500 |
ttttgattatcataattgaccaaagtagcatgagattgatcaacagaagcaacaactggaacaaaagtagttgttccatcattgagcttttgaatccgga |
2589599 |
T |
|
| Q |
282 |
gatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatgcatgagcagcgaatttctgtga |
381 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||| |||||||||||| || |
|
|
| T |
2589600 |
gatttggtctctttcggatcttagacatgtatctcttttttctctcttctagagtttcagacttgtagtgacttgtcacatgactagcgaatttctggga |
2589699 |
T |
|
| Q |
382 |
tgttgctattactttg |
397 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
2589700 |
tgttgaaattactttg |
2589715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 82 - 356
Target Start/End: Original strand, 10299462 - 10299735
Alignment:
| Q |
82 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
181 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||| || |||| | |||||||| || |||||| |
|
|
| T |
10299462 |
aaataaatattacaaattgagcatgcataatatattttaattatcagtgg-ctctaatttaatttttactccgcttaccgaaggagcaggggaactcata |
10299560 |
T |
|
| Q |
182 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
281 |
Q |
| |
|
|||||| |||||||| ||| ||| |||||| || ||||||| ||||| || || ||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
10299561 |
ttttgattatcataattgatcaaagtagcatgagaatgatcaacagaag-aacaaccggaacaaaagtagttgttctatcattgagcttttgaatctgga |
10299659 |
T |
|
| Q |
282 |
gatctggtctctttcggatcctagacatgtatctc-ttttttctctcttcttcactttcagtcttgtagtgacttg |
356 |
Q |
| |
|
||| |||||||||| |||| |||||||||||||| ||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
10299660 |
gatttggtctcttttagatcatagacatgtatctctttttttctctcttctagagtttcagacttgtagtgacttg |
10299735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 82 - 356
Target Start/End: Complemental strand, 2590072 - 2589798
Alignment:
| Q |
82 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
181 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||| || |||||||| || || |||||||||||| | |||| | ||| || || || |||||| |
|
|
| T |
2590072 |
aaataaatattacaaattgaacttgcataatatattttcattatcagcaagcttcaatttaacttttacttcgcttacaagagaagtaggggtactcata |
2589973 |
T |
|
| Q |
182 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
281 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||||| |||||||||| |||| ||| || |||||| ||| ||||||||| ||| ||| |||||||| || | |
|
|
| T |
2589972 |
ttttgattatcataattgacagaagcagcatgcgactgatcaacagaaacaacaactcgaacaaaagttgttgttccaacattgagtttttgaatatgaa |
2589873 |
T |
|
| Q |
282 |
gatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttg |
356 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||| || || | || | |||||| ||||||||||||| |
|
|
| T |
2589872 |
gatttggtctctttgggatcctagacatgtatctctttttcctttccttttgagtttcagaattgtagtgacttg |
2589798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 82 - 324
Target Start/End: Complemental strand, 10300133 - 10299891
Alignment:
| Q |
82 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
181 |
Q |
| |
|
||||||| |||| ||||||| | |||||||||||| ||||||||||| || || |||||||||||| | |||| | ||| || || ||| |||||| |
|
|
| T |
10300133 |
aaataaatattataaattgaacttgcataatatattttaattatcagcaagctttaatttaacttttacttcgcttacaagagaagtaggggcactcata |
10300034 |
T |
|
| Q |
182 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
281 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||||| ||||||||||||||| ||| || |||||| ||| ||||||||| ||| ||| ||| ||||||| | |
|
|
| T |
10300033 |
ttttgattatcataattgacagaagcagcatgcgactgatcaatagaaacaacaacttgaacaaaagttgttgttccaacattgagttttggaatctgaa |
10299934 |
T |
|
| Q |
282 |
gatctggtctctttcggatcctagacatgtatctcttttttct |
324 |
Q |
| |
|
||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10299933 |
gattttatctctttgggatcctagacatgtatctcttttttct |
10299891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 82 - 355
Target Start/End: Original strand, 22222132 - 22222406
Alignment:
| Q |
82 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
181 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||| ||| ||| ||||| |||||| || |||| |||||||||| || ||||| |
|
|
| T |
22222132 |
aaataaatattacaaattgagcatgcataatatattttaattattagtgt-ctccaatttaatttttactccgcttaccggaggagcaggggaagtcata |
22222230 |
T |
|
| Q |
182 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
281 |
Q |
| |
|
|||||| |||||||| ||| | ||| |||||| || || ||||||||||||| || |||||| ||||||||||||||||| || ||| |||||| ||| |
|
|
| T |
22222231 |
ttttgattatcataattgacaaaagcagcatgagattggtcaatagaagcaacaactcgaacaaaagtagttgttccatcattgatcttatgaatccgga |
22222330 |
T |
|
| Q |
282 |
gatctggt--ctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgactt |
355 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
22222331 |
gatttggtcactctttcggatcctagacatgtatctcttttttttctcttctagagtttcagatttgtagtgactt |
22222406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 82 - 356
Target Start/End: Complemental strand, 22222806 - 22222532
Alignment:
| Q |
82 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
181 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||| ||||||||||| || ||| ||| |||||||| | |||| | |||||||||||| |||||| |
|
|
| T |
22222806 |
aaataaatattacaaattgaacttgcataatatattttaattatcagcaagctccaatttgacttttacttcgcttacaagaggagcagaggaactcata |
22222707 |
T |
|
| Q |
182 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
281 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||||| ||||||||| ||| ||| || | ||||| || ||||||||| ||| ||| ||||||||||| | |
|
|
| T |
22222706 |
ttttgattatcataattgatagaagcagcatgcaactgatcaacggaaacaacaactgaaacaaatgttgttgttccaacattgagtttttgaatctgca |
22222607 |
T |
|
| Q |
282 |
gatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttg |
356 |
Q |
| |
|
||| || ||||||| |||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||| |
|
|
| T |
22222606 |
gatttgttctctttgggatcctagacatgtatctcttttttctttcttcttgagtttcaaaattgtagtgacttg |
22222532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 38261211 - 38261060
Alignment:
| Q |
208 |
agcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctggagatctggtctctttcggatcctagac |
307 |
Q |
| |
|
||||||||||| |||| | ||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||| || |||||||| |||||||| |
|
|
| T |
38261211 |
agcatgtgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcctctttcgaatcctagaa |
38261112 |
T |
|
| Q |
308 |
atgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatg |
359 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
38261111 |
atgtatctcttttttctgtcttcttcactttcgaacttgcagtgacttgatg |
38261060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 38244911 - 38244760
Alignment:
| Q |
208 |
agcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctggagatctggtctctttcggatcctagac |
307 |
Q |
| |
|
||||||||||| |||| | |||||| |||||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
38244911 |
agcatgtgacttatcagcacaagcaacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaa |
38244812 |
T |
|
| Q |
308 |
atgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatg |
359 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
38244811 |
ttgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatg |
38244760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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