View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7927_low_6 (Length: 407)

Name: NF7927_low_6
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7927_low_6
NF7927_low_6
[»] chr4 (5 HSPs)
chr4 (18-397)||(23339106-23339485)
chr4 (128-175)||(55870258-55870305)
chr4 (131-160)||(1561998-1562027)
chr4 (227-275)||(25497457-25497505)
chr4 (133-169)||(52315118-52315154)
[»] chr6 (3 HSPs)
chr6 (129-173)||(1231216-1231260)
chr6 (129-165)||(6536729-6536765)
chr6 (129-165)||(33027709-33027745)
[»] chr8 (3 HSPs)
chr8 (131-162)||(31891931-31891962)
chr8 (224-276)||(27320198-27320250)
chr8 (131-175)||(35298396-35298440)
[»] chr7 (3 HSPs)
chr7 (137-172)||(25847653-25847688)
chr7 (229-275)||(39505840-39505886)
chr7 (224-277)||(753340-753393)
[»] chr5 (3 HSPs)
chr5 (131-162)||(34417845-34417876)
chr5 (224-277)||(13244617-13244670)
chr5 (227-279)||(29115352-29115404)
[»] chr1 (2 HSPs)
chr1 (133-176)||(30257790-30257833)
chr1 (33-97)||(52103509-52103573)
[»] scaffold1252 (1 HSPs)
scaffold1252 (131-177)||(381-427)
[»] chr2 (1 HSPs)
chr2 (227-277)||(13869234-13869284)
[»] scaffold0388 (1 HSPs)
scaffold0388 (128-160)||(8745-8777)


Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 23339106 - 23339485
Alignment:
Q  18 cacttaaggctgcacttgctgagttcatttcaatgctcatttttgtctttgcaggggaaggctctggcatggcatatagtaagcattttcatttgttaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23339106 cacttaaggctgcacttgctgagttcatttcaatgctcatttttgtctttgcaggggaaggctctggcatggcatatagtaagcattttcatttgttaaa 23339205  T
Q  118 ctcttttatgacatgtttggattaatttatttgagtttatctactgacgtaaacatttttaaaaccggtataagctcatttcctttagttatatgaaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23339206 ctcttttatgacatgtttggattaatttatttgagtttatctactgacgtaaacatttttaaaaccggtataagctcatttcctttagttatatgaaaac 23339305  T
Q  218 attcttttatatgataaatatttatgctataaacgcttaattgaactgtttttccaaacatgtttgagtgtaactttatgtttttgacagataagcttac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23339306 attcttttatatgataaatatttatgctataaacgcttaattgaactgtttttccaaacatgtttgagtgtaactttatgtttttgacagataagcttac 23339405  T
Q  318 aaacaatggtgcagcaacaccagcagggttggtagctgcatcactatcacatgcatttgcactttttgttgctgtctctg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23339406 aaacaatggtgcagcaacaccagcagggttggtagctgcatcactatcacatgcatttgcactttttgttgctgtctctg 23339485  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 55870258 - 55870305
Alignment:
Q  128 acatgtttggattaatttatttgagtttatctactgacgtaaacattt 175  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  55870258 acatgtttggattaacttatttgagtttatctaatgacataaacattt 55870305  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Complemental strand, 1562027 - 1561998
Alignment:
Q  131 tgtttggattaatttatttgagtttatcta 160  Q
    ||||||||||||||||||||||||||||||    
T  1562027 tgtttggattaatttatttgagtttatcta 1561998  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 25497505 - 25497457
Alignment:
Q  227 tatgataaatatttatgctataaacgcttaattgaactgtttttccaaa 275  Q
    |||||||||  |||||||||||| ||||||||||| |||||| ||||||    
T  25497505 tatgataaacgtttatgctataagcgcttaattgatctgtttatccaaa 25497457  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 52315118 - 52315154
Alignment:
Q  133 tttggattaatttatttgagtttatctactgacgtaa 169  Q
    |||||||| | ||||||||||||||||||||||||||    
T  52315118 tttggattgacttatttgagtttatctactgacgtaa 52315154  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 1231216 - 1231260
Alignment:
Q  129 catgtttggattaatttatttgagtttatctactgacgtaaacat 173  Q
    |||||||||||| ||||||||||||||||||| |||| |||||||    
T  1231216 catgtttggattgatttatttgagtttatctattgacataaacat 1231260  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 6536765 - 6536729
Alignment:
Q  129 catgtttggattaatttatttgagtttatctactgac 165  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  6536765 catgtttggattaaattatttgagtttacctactgac 6536729  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 33027745 - 33027709
Alignment:
Q  129 catgtttggattaatttatttgagtttatctactgac 165  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  33027745 catgtttggattgatttatttgagcttatctactgac 33027709  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 162
Target Start/End: Complemental strand, 31891962 - 31891931
Alignment:
Q  131 tgtttggattaatttatttgagtttatctact 162  Q
    ||||||||||||||||||||||||||||||||    
T  31891962 tgtttggattaatttatttgagtttatctact 31891931  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 27320250 - 27320198
Alignment:
Q  224 ttatatgataaatatttatgctataaacgcttaattgaactgtttttccaaac 276  Q
    |||| |||||| | |||||||||||| ||||||||| || |||||||||||||    
T  27320250 ttatgtgataagtgtttatgctataagcgcttaattaaattgtttttccaaac 27320198  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 35298396 - 35298440
Alignment:
Q  131 tgtttggattaatttatttgagtttatctactgacgtaaacattt 175  Q
    |||||||||||| |||||||||||||| |||| || |||||||||    
T  35298396 tgtttggattaacttatttgagtttatgtacttacataaacattt 35298440  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 25847688 - 25847653
Alignment:
Q  137 gattaatttatttgagtttatctactgacgtaaaca 172  Q
    ||||||||||||||||||||||||||||| ||||||    
T  25847688 gattaatttatttgagtttatctactgacataaaca 25847653  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 39505886 - 39505840
Alignment:
Q  229 tgataaatatttatgctataaacgcttaattgaactgtttttccaaa 275  Q
    ||||||| |||||||||||||| |||||||||| |||||| ||||||    
T  39505886 tgataaacatttatgctataaatgcttaattgagctgtttatccaaa 39505840  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 753340 - 753393
Alignment:
Q  224 ttatatgataaatatttatgctataaacgcttaattgaactgtttttccaaaca 277  Q
    ||||||||||||| |||||||||||||| ||||||| |  ||||| ||||||||    
T  753340 ttatatgataaatgtttatgctataaacacttaattaagttgtttatccaaaca 753393  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 34417845 - 34417876
Alignment:
Q  131 tgtttggattaatttatttgagtttatctact 162  Q
    ||||||||||||||||||||||||||||||||    
T  34417845 tgtttggattaatttatttgagtttatctact 34417876  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 13244617 - 13244670
Alignment:
Q  224 ttatatgataaatatttatgctataaacgcttaattgaactgtttttccaaaca 277  Q
    |||||||||||   ||||||||||||||||| |||| |||||||| ||||||||    
T  13244617 ttatatgataagcgtttatgctataaacgctcaatttaactgtttatccaaaca 13244670  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 29115352 - 29115404
Alignment:
Q  227 tatgataaatatttatgctataaacgcttaattgaactgtttttccaaacatg 279  Q
    |||||||||| |||||||||||| ||| ||||| || ||||| ||||||||||    
T  29115352 tatgataaatgtttatgctataagcgcgtaattaaagtgtttatccaaacatg 29115404  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 30257833 - 30257790
Alignment:
Q  133 tttggattaatttatttgagtttatctactgacgtaaacatttt 176  Q
    |||||||| | |||||||||||||||||||||| ||||||||||    
T  30257833 tttggatttacttatttgagtttatctactgacataaacatttt 30257790  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 52103573 - 52103509
Alignment:
Q  33 ttgctgagttcatttcaatgctcatttttgtctttgcaggggaaggctctggcatggcatatagt 97  Q
    |||| |||||| | || |||||||||||||| ||||| ||  |||||||||||||||| ||||||    
T  52103573 ttgcagagttcttctctatgctcatttttgtttttgctggccaaggctctggcatggcctatagt 52103509  T

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Target: scaffold1252 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1252
Description:

Target: scaffold1252; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 427 - 381
Alignment:
Q  131 tgtttggattaatttatttgagtttatctactgacgtaaacattttt 177  Q
    |||||||||||| |||||||||||||| ||||| | |||||||||||    
T  427 tgtttggattaacttatttgagtttatatactgccataaacattttt 381  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 13869234 - 13869284
Alignment:
Q  227 tatgataaatatttatgctataaacgcttaattgaactgtttttccaaaca 277  Q
    |||||||| | |||||||||||| ||||||||||| |||||| ||||||||    
T  13869234 tatgataagtgtttatgctataagcgcttaattgagctgtttatccaaaca 13869284  T

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Target: scaffold0388 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 8745 - 8777
Alignment:
Q  128 acatgtttggattaatttatttgagtttatcta 160  Q
    ||||||||||||| |||||||||||||||||||    
T  8745 acatgtttggattgatttatttgagtttatcta 8777  T

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