View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7927_low_9 (Length: 330)
Name: NF7927_low_9
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_low_9 |
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| [»] scaffold0121 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 9756890 - 9756588
Alignment:
| Q |
18 |
atttcatgccaacaataaaatccacctattatattaatagttggtgatatagaacactcatataatatgctactctctgaccttaattataaataaaaat |
117 |
Q |
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| T |
9756890 |
atttcatgccaacaataaaatccacctattatattaatagttggtgatatagaacactcatataatatgctactctctgacattaattataaataaaaat |
9756791 |
T |
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| Q |
118 |
agatctnnnnnnnttgatgtatttgatttaaaatttgaaccaaatacatccattttcctctaagcttggtgcatgtgttatacgtaaatgaaagattact |
217 |
Q |
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| T |
9756790 |
agatctaaaaaaatttatgtatttgatttaaaatttgaaccaaatacatccattttcctctaagcttggtccatgagttgtacgtaaatgaaagattact |
9756691 |
T |
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| Q |
218 |
tctttgcaattttaaagggtggccttgtgtgatatacaaaactggtcctactgtgatgatcggaccggacttgagcgaacatttggtggctgagccgttc |
317 |
Q |
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| T |
9756690 |
tctttgcaattttaaagggtggccttgtatgatatacaaaactggtcctactgtgatgatcggaccggactttagctaacatttggtggctgagccgttc |
9756591 |
T |
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| Q |
318 |
att |
320 |
Q |
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| T |
9756590 |
att |
9756588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 9336838 - 9336774
Alignment:
| Q |
227 |
ttttaaagggtggccttgtgtgatatacaaaactggtcctactgtgatgatcggaccggacttga |
291 |
Q |
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| T |
9336838 |
ttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttga |
9336774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 36747 - 36827
Alignment:
| Q |
20 |
ttcatgccaacaataaaatccacctattatattaatagttggtgatatagaacactcatataatatgctactctctgacct |
100 |
Q |
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| T |
36747 |
ttcatgccaacaatcaaatccacctattacattaatagttggtgatatagaacactcatataatatgctactctctgacct |
36827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 36878 - 36920
Alignment:
| Q |
131 |
ttgatgtatttgatttaaaatttgaaccaaatacatccatttt |
173 |
Q |
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| T |
36878 |
ttgatgtatttgatttaaaatttgaactaaataaatccatttt |
36920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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