View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7928_low_1 (Length: 696)
Name: NF7928_low_1
Description: NF7928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7928_low_1 |
 | |
|
| [»] scaffold0074 (2 HSPs) |
| | |
|
| [»] scaffold0153 (1 HSPs) |
| | |
|
| [»] scaffold1251 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 631; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 13 - 679
Target Start/End: Complemental strand, 41243019 - 41242353
Alignment:
| Q |
13 |
gcagagacgattgttggcgtgggaggaagaaagtgtcaaggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41243019 |
gcagagacgattgttggcgtgggaggaagaaagtgtcagggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggagg |
41242920 |
T |
|
| Q |
113 |
tggcttcttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaacatctgatgcagaaccggtggtggagggtgttcagaaaaatgtgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41242919 |
tggcttcttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaacatctgatgcagaaccggtggtggagggtgttcagaaaaatgtgt |
41242820 |
T |
|
| Q |
213 |
ggcacaagttagttccttctaaagttgctctctttgcgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttatcca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41242819 |
ggcacaagttagttccttctaaagttgctctctttgtgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttatcca |
41242720 |
T |
|
| Q |
313 |
acctaacggtattctatgtgctggtgggtgtggaaacattgagacatcgaatcatctttttcttggttgtaacctttttggaagtgtttggtacttaatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41242719 |
acctaacggtattctatgtgctggtgggtgtggaaacattgagacagcggatcatctttttcttggttgtaacctttttggaagtgtttggtacttaatt |
41242620 |
T |
|
| Q |
413 |
tgtaattggcttggcatttgttatgttccttcatgtcagctttctgatcactttctgcagtctagcaacatggcgggtatgccgagattttctcatacct |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
41242619 |
tgtaattggcttggcatttgttatgttccttcatgtcagctttctgatcactttctgcagtttagcaacatggcgagtatgccgagattttctcatactt |
41242520 |
T |
|
| Q |
513 |
ttttcaaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttga |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41242519 |
ttttcaaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttga |
41242420 |
T |
|
| Q |
613 |
aaaagtgaagcgagattctttcttttggctatattcgaatcgtattccgttagcttttggttttcat |
679 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41242419 |
aaaagtgaagcgggattctttcttttggctatattcgaatcgtatttcgttagcttttggttttcat |
41242353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 221 - 679
Target Start/End: Complemental strand, 40452473 - 40452015
Alignment:
| Q |
221 |
ttagttccttctaaagttgctctctttgcgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttatccaacctaacg |
320 |
Q |
| |
|
||||| |||||||||||| || | ||||| ||||| ||||||||||| | ||||||||| |||| ||||| ||| ||||| ||||| | ||||| |||| |
|
|
| T |
40452473 |
ttagtcccttctaaagtttctgtttttgcatggcgactacttcaagatagagttccaacaagagttaattttgtgagaagacatgttctacaaccgaacg |
40452374 |
T |
|
| Q |
321 |
gtattctatgtgctggtgggtgtggaaacattgagacatcgaatcatctttttcttggttgtaacctttttggaagtgtttggtacttaatttgtaattg |
420 |
Q |
| |
|
| | || |||| |||||||||||||| | ||| | | || ||||||| |||| || ||| ||||||| ||||||||||| || ||||||||||| |
|
|
| T |
40452373 |
gcaacctgtgtgtcggtgggtgtggaaatttagagcctgcagattatcttttcattggctgcaacatttttgggagtgtttggtatttgatttgtaattg |
40452274 |
T |
|
| Q |
421 |
gcttggcatttgttatgttccttcatgtcagctttctgatcactttctgcagtctagcaacatggcgggtatgccgagattttctcatacctttttcaag |
520 |
Q |
| |
|
||||||||| | |||||| ||| | | | | || |||||||| | |||| || || |||||||||||||||||| ||| ||| | ||| ||| |
|
|
| T |
40452273 |
gcttggcatctcatatgtttctttaggattggtaactaatcactttttacagtttactaatttggcgggtatgccgagatcttcccatttttattttaag |
40452174 |
T |
|
| Q |
521 |
gtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtga |
620 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| | ||| || |||||| | ||||||||||||||||||||||| |||| ||| ||||| ||||||| |
|
|
| T |
40452173 |
gtgatttggctcgcttctatttgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggtaatagatccccaaagcatccttgataaagtga |
40452074 |
T |
|
| Q |
621 |
agcgagattctttcttttggctatattcgaatcgtattccgttagcttttggttttcat |
679 |
Q |
| |
|
|| |||| || ||||||| | ||||||| | |||||| |||||||| |||||||| |
|
|
| T |
40452073 |
agttcaattcctttctttggctctcttcgaattgcattccgctagcttttagttttcat |
40452015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 542 - 622
Target Start/End: Original strand, 17263149 - 17263229
Alignment:
| Q |
542 |
tgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtgaag |
622 |
Q |
| |
|
|||||||| ||||||||| |||| |||||| |||| |||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
17263149 |
tgggcaatatggaaggatagaaacaactgtgtattaaaaaatgcggtaatcgatcctcacagtgttcttgaaaaagtgaag |
17263229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 22359533 - 22359385
Alignment:
| Q |
20 |
cgattgttggcgtgggaggaagaaagtgtcaaggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggaggtggcttc |
119 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| | ||||||| | | |||| | ||| ||||||||||||| |||| ||||||| ||| ||||| | | |
|
|
| T |
22359533 |
cgattgctggcttgggaggaagagagtgtgagggagtgtgtttcactgttaaataacattgttttgcaggaaaatattcaggactagtggtggtggttgc |
22359434 |
T |
|
| Q |
120 |
ttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaac |
168 |
Q |
| |
|
||||||| || ||||| || |||||| ||||||||||| ||| |||||| |
|
|
| T |
22359433 |
ttgatccgattcatggctatacggttagtgggacgtattgttacctaac |
22359385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 6458426 - 6458477
Alignment:
| Q |
120 |
ttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaacatc |
171 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||| || |||||||||||||| |
|
|
| T |
6458426 |
ttgatcctattcatggttactcggttagtgggacttaccgtttcctaacatc |
6458477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 598
Target Start/End: Original strand, 644773 - 644827
Alignment:
| Q |
544 |
ggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
644773 |
ggcaatttggaaggagagaaacaactgtattttcaaaaatgcggttattgatcct |
644827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 13781595 - 13781454
Alignment:
| Q |
27 |
tggcgtgggaggaagaaagtgtcaaggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggaggtggcttcttgatcc |
126 |
Q |
| |
|
||||||||||||| || || || | ||||||| |||| |||||| ||| ||| |||||||| | |||| || |||| ||||||||| | || ||||| |
|
|
| T |
13781595 |
tggcgtgggaggaggatagcgtgagggagtgttctgctttgttgaataacgttattttgcagaaaaatattcaagactactggaggtggttactagatcc |
13781496 |
T |
|
| Q |
127 |
tatacatggttacacggttcgtgggacgtatcgtttcctaac |
168 |
Q |
| |
|
||| || |||||| ||||||| | ||| ||||| |||||||| |
|
|
| T |
13781495 |
tattcaaggttactcggttcgcgagacatatcgattcctaac |
13781454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 598
Target Start/End: Original strand, 6458824 - 6458904
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| || | | |||| ||||| |||||||| | ||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
6458824 |
aaggttatttggcttgcctgtgtatgagcaatatggaaggagaggaataattgtatcttcaaaaatgcggtaattgatcct |
6458904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 679
Target Start/End: Complemental strand, 13160553 - 13159890
Alignment:
| Q |
16 |
gagacgattgttggcgtgggaggaagaaagtgtcaaggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggaggtgg |
115 |
Q |
| |
|
|||||| || ||||| ||||||||||| ||||| |||||| | |||| |||||||||||||||||||||| |||||| || ||||| |||||||||| |
|
|
| T |
13160553 |
gagacgtttattggcttgggaggaagatagtgttcgggagtgcaatgctttgttgagtaatgttgttttgcaagatcatttaacggactattggaggtgg |
13160454 |
T |
|
| Q |
116 |
cttcttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaacatctgatgcagaaccggtggtggagggtgttcagaaaaatgtgtggc |
215 |
Q |
| |
|
|| ||||||||||| ||||||||| ||| ||||||| | |||||||||||||||| |||||| ||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
13160453 |
ctccttgatcctatccatggttactcggctcgtggggcatatcgtttcctaacatgtgatgctgaaccggtggtggagggtgtttataaaaatgtttggc |
13160354 |
T |
|
| Q |
216 |
acaagttagttccttctaaagttgctctctttgcgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttatccaacc |
315 |
Q |
| |
|
| ||| | ||| |||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| | ||||||| |
|
|
| T |
13160353 |
ataagctggttacttctaaagtagctctcttcacatggcggctacttcaagacaaaattccaactagagcaaatttggtgtgaagacatgctctccaacc |
13160254 |
T |
|
| Q |
316 |
taacggtattctatgtgctggtgggtgtggaaacattgagacatcgaatcatctttttcttggttgtaacctttttggaagtgtttggtacttaatttgt |
415 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||| ||||| || |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13160253 |
taacggtaacctgtgtattggtgggtgtggaaacatggagacggcggatcatcttttccttggttgcaacctttttggaagtgtttggtacttaatttgt |
13160154 |
T |
|
| Q |
416 |
aattggcttggcatttgttatgttccttcatgtcagctttctgatcactttctgcagtctagcaacatggcgggtatgccgagattttctcatacctttt |
515 |
Q |
| |
|
| ||||||||| |||| ||||||||||||| | | |||| |||| |||||| | |||| ||| || ||||||| |||||||||| ||||||||| | || |
|
|
| T |
13160153 |
agttggcttggtatttcttatgttccttcaagactgcttactgaccactttttacagtttagtaatttggcgggcatgccgagatcttctcatacttatt |
13160054 |
T |
|
| Q |
516 |
tcaaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaa |
615 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
13160053 |
ttaaggtgatttggctcgcttctatatgggcaatttggaaggaccgtaataactatatattcaaaaatgcggtgttagatcctcaaattattcttgaaaa |
13159954 |
T |
|
| Q |
616 |
agtgaagcgagattctttcttttggctatattcgaatcgtattccgttagcttttggttttcat |
679 |
Q |
| |
|
|||||| | ||||| || || ||||||| |||||| |||||||||||||| |||| ||||||| |
|
|
| T |
13159953 |
ggtgaagtgggattcatttttatggctatcttcgaaccgtattccgttagcgtttgattttcat |
13159890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 46191744 - 46191608
Alignment:
| Q |
17 |
agacgattgttggcgtgggaggaagaaagtgtcaaggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggaggtggc |
116 |
Q |
| |
|
||||||||||||||||||||||| || ||||| | ||||||| |||| |||||| ||| ||| ||||| ||| | |||| ||||| ||||||||||| |
|
|
| T |
46191744 |
agacgattgttggcgtgggaggatgagagtgtgagggagtgtgctgctttgttgaataacgttattttgtaggttaatattcaggatacttggaggtggc |
46191645 |
T |
|
| Q |
117 |
ttcttgatcctatacatggttacacggttcgtgggac |
153 |
Q |
| |
|
|| | || ||| ||||||||| ||||||||||||| |
|
|
| T |
46191644 |
ttatagacccttctcatggttacgcggttcgtgggac |
46191608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 136689 - 136559
Alignment:
| Q |
23 |
ttgttggcgtgggaggaagaaagtgtcaaggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggaggtggcttcttg |
122 |
Q |
| |
|
|||| |||||||||||| || ||||| | ||||||| | || |||||| ||| || ||||||||| | |||| |||||| |||||||||||| |||| |
|
|
| T |
136689 |
ttgtgggcgtgggaggaggagagtgtgagggagtgtgctactttgttgaataacgtcattttgcaggttaatatctaggactcttggaggtggctgcttg |
136590 |
T |
|
| Q |
123 |
atcctatacatggttacacggttcgtgggac |
153 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |
|
|
| T |
136589 |
atccgttacatggttattcggttcgtgggac |
136559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 596
Target Start/End: Original strand, 11821233 - 11821305
Alignment:
| Q |
524 |
atttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatc |
596 |
Q |
| |
|
|||||||| |||| | |||||||||| || ||||| ||||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
11821233 |
atttggcttgcttgtgtatgggcaatatgaaaggagagaaataactgtatcttcaaaaatacggtaattgatc |
11821305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 598
Target Start/End: Original strand, 17185999 - 17186079
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| || | | |||||||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
17185999 |
aaggttatttggcttgcctgtgtatgggcaatatggaaggagagaaataactgtttattcaaaaatacagtaattgatcct |
17186079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 598
Target Start/End: Complemental strand, 17187655 - 17187575
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| || | | |||||||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
17187655 |
aaggttatttggcttgcctgtgtatgggcaatatggaaggagagaaataactgtttattcaaaaatacagtaattgatcct |
17187575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 14454702 - 14454635
Alignment:
| Q |
78 |
ttgttttgcaggatcatatacaggacttttggaggtggcttcttgatcctatacatggttacacggtt |
145 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||| | ||||||||||| |||||||| |||||| |
|
|
| T |
14454702 |
ttgttttgcaggataatattcaggaccagtggaggtggttacttgatcctattcatggttatacggtt |
14454635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 34014520 - 34014580
Alignment:
| Q |
75 |
atgttgttttgcaggatcatatacaggacttttggaggtggcttcttgatcctatacatgg |
135 |
Q |
| |
|
||||||||||||||| |||||| || ||| |||||||||||||||||||| | |||||| |
|
|
| T |
34014520 |
atgttgttttgcaggctcatattcatgacaggtggaggtggcttcttgatcccacacatgg |
34014580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 598
Target Start/End: Original strand, 39868053 - 39868133
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| || | | |||||||||| |||||||| ||||||| ||| ||||||||||| | ||||| |||||| |
|
|
| T |
39868053 |
aaggttatttggcttgcctgtgtatgggcaatatggaaggagagaaataattgtttattcaaaaatacagtaattgatcct |
39868133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 16 - 613
Target Start/End: Complemental strand, 22859480 - 22858884
Alignment:
| Q |
16 |
gagacgattgttggcgtgggaggaagaaagtgtcaaggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggaggtgg |
115 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
22859480 |
gagacgcttgttggcatgggaggaagagagtgtcagggagtgcagtgctttgttatgtaatgttgttttgcaggatcatatgcaggactattggaggtgg |
22859381 |
T |
|
| Q |
116 |
cttcttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaacatctgatgcagaaccggtggtggagggtgttcagaaaaatgtgtggc |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||| || || | || ||||| |||| |
|
|
| T |
22859380 |
tttcttgatcctatacatggttacttggttcgtgggacatatcgtttcctaacatatgatgcagaacc-gtggtggaaggcgtgtataacaatgtttggc |
22859282 |
T |
|
| Q |
216 |
acaagttagttccttctaaagttgctctctttgcgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttatccaacc |
315 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| || || |||||| |
|
|
| T |
22859281 |
ataagctagttccttctaaagttgctctctttgcatggcggctacttcaagataaagtttcaactagagcaaatttggtgcgaagacatattttccaact |
22859182 |
T |
|
| Q |
316 |
taacggtattctatgtgctggtgggtgtggaaacattgagacatcgaatcatctttttcttggttgtaacctttttggaagtgtttggtacttaatttgt |
415 |
Q |
| |
|
|||||||| | |||| ||||||| ||||||||||||||| ||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
22859181 |
taacggtaacttgtgtgtcggtgggtatggaaacattgagacgacgaatcatcttttccttagttgcaacctttttgggagtgtttggtacttaatttgt |
22859082 |
T |
|
| Q |
416 |
aattggcttggcatttgttatgttccttcatgtcagctttctgatcactttctgcagtctagcaacatggcgggtatgccgagattttctcatacctttt |
515 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| | |||| ||| |||||| | |||| ||| || ||||||||||||||| || ||||||||| | || |
|
|
| T |
22859081 |
aattggtttggcatttcttatgttccttcaggattgcttaatgaccactttttacagtttagtaatttggcgggtatgccgaaatcttctcatacttatt |
22858982 |
T |
|
| Q |
516 |
tcaaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaa |
613 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| ||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22858981 |
tcaaggtgatttgactcgcttctatttgggcaatttgaaagggtcgtaataaatgtatcttcaaaaatgcactaatagatcctcaaatcattcttgaa |
22858884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 387 - 678
Target Start/End: Original strand, 3202312 - 3202603
Alignment:
| Q |
387 |
tttttggaagtgtttggtacttaatttgtaattggcttggcatttgttatgttccttcatgtcagctttctgatcactttctgcagtctagcaacatggc |
486 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||||||||||| |||||||||| | | | | ||||||||||| | || | || || ||| |
|
|
| T |
3202312 |
tttttgggagtgtttgatatttaatttgtaattggcttggcatttcatatgttcctttaggaatggtaactgatcactttttacactttactaatttggt |
3202411 |
T |
|
| Q |
487 |
gggtatgccgagattttctcatacctttttcaaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcg |
586 |
Q |
| |
|
|||||||||||||| || |||| | ||| || |||||||| |||||||||| ||||||||||| || || || | |||| | | |||||||||||| |
|
|
| T |
3202412 |
gggtatgccgagatctttccatatttattttaaagtgatttgactcgcttctacttgggcaatttgcaaagaacggagcaactttgtcttcaaaaatgcg |
3202511 |
T |
|
| Q |
587 |
gtaatagatcctcaaatcattcttgaaaaagtgaagcgagattctttcttttggctatattcgaatcgtattccgttagcttttggttttca |
678 |
Q |
| |
|
||||||||||| |||| ||| ||||| ||||||||| |||| || ||||||| | ||||||||| |||||| |||||||| ||||||| |
|
|
| T |
3202512 |
gtaatagatccccaaagcatccttgataaagtgaagtttaattcctttctttggctctcttcgaatcgcattccgatagcttttagttttca |
3202603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 15140107 - 15140217
Alignment:
| Q |
207 |
atgtgtggcacaagttagttccttctaaagttgctctctttgcgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgt |
306 |
Q |
| |
|
||||||||||||| || |||||| | |||||| |||| ||||| ||||| || |||||||| | | ||||||||||| | ||||||||||| || |||| |
|
|
| T |
15140107 |
atgtgtggcacaaattggttcctacaaaagtttctctgtttgcttggcgtctccttcaagatagaattccaactagatctaatttggtgcgtcgacatgt |
15140206 |
T |
|
| Q |
307 |
tatccaaccta |
317 |
Q |
| |
|
| ||||||||| |
|
|
| T |
15140207 |
tctccaaccta |
15140217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 598
Target Start/End: Complemental strand, 45468499 - 45468419
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| |||| | |||||||||| |||||||| ||||||| ||||| || |||||||||||||| |||||| |
|
|
| T |
45468499 |
aaggttatttggcttgcttgtgtatgggcaatatggaaggagagaaataattgtatcttaaaaaatgcggtaattgatcct |
45468419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 598
Target Start/End: Original strand, 3375884 - 3375942
Alignment:
| Q |
540 |
tatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
3375884 |
tatgggcaatatggaaggagagaaataactgtttattcaaaaatacagtaattgatcct |
3375942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 598
Target Start/End: Original strand, 32603055 - 32603129
Alignment:
| Q |
524 |
atttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
|||||||| || |||| ||||||||| ||||||| | |||| || ||| | ||||||||||||||||| |||||| |
|
|
| T |
32603055 |
atttggctagcatctacatgggcaatatggaaggttagaaacaattgtgtcttcaaaaatgcggtaattgatcct |
32603129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 679
Target Start/End: Original strand, 12915518 - 12915655
Alignment:
| Q |
542 |
tgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtgaagcgagattctttcttttggc |
641 |
Q |
| |
|
|||||||| ||||| ||| |||| ||| || | ||||||||||||||||| ||| |||| | ||||||||||| |||||| || || || || ||| |
|
|
| T |
12915518 |
tgggcaatatggaatgatagaaacaaccgtgtcttcaaaaatgcggtaattgattctcacaatattcttgaaaaggtgaagattgactcctttttatggt |
12915617 |
T |
|
| Q |
642 |
tatattcgaatcgtattccgttagcttttggttttcat |
679 |
Q |
| |
|
||| || ||| |||||| |||||||||||||||||| |
|
|
| T |
12915618 |
tatctttaaattatattccattagcttttggttttcat |
12915655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 551 - 587
Target Start/End: Complemental strand, 11980932 - 11980896
Alignment:
| Q |
551 |
tggaaggatcgaaataactgtatattcaaaaatgcgg |
587 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
11980932 |
tggaaggatcgaaataaccgtatatttaaaaatgcgg |
11980896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 551 - 587
Target Start/End: Original strand, 26152024 - 26152060
Alignment:
| Q |
551 |
tggaaggatcgaaataactgtatattcaaaaatgcgg |
587 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
26152024 |
tggaaggatagaaataactgtatatttaaaaatgcgg |
26152060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 222 - 679
Target Start/End: Original strand, 10348966 - 10349424
Alignment:
| Q |
222 |
tagttccttctaaagttgctctctttgcgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttatccaacctaacgg |
321 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
10348966 |
tagttccttctaaacttgcactctttgcgtggcggctacttcaagacaaagtttcatctagagcaaatttggtgcaaagacatgttatccaacctaacgg |
10349065 |
T |
|
| Q |
322 |
tattctatgtgctggtgggtgtggaaacattgagacatcgaatcatctttttcttggttgtaacctttttggaagtgtttggtacttaatttgtaattgg |
421 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
10349066 |
tatcctttgtgctggtgggtgtggaaacattgagacggcggatcatcttttccttggttgtaatctttttggaaatgtttggtatttaatttgtaattgg |
10349165 |
T |
|
| Q |
422 |
cttggcatttgtt-atgttccttcatgtcagctttctgatcactttctgcagtctagcaacatggcgggtatgccgagattttctcatacctttttcaag |
520 |
Q |
| |
|
|||||||||| || ||| |||| | | | | |||||||||||||| | |||| |||||||||| |||| ||||||||| ||||||||| | ||||||| |
|
|
| T |
10349166 |
cttggcatttttttatgcccctttaggactgatttctgatcactttttacagtttagcaacatgacgggcttgccgagatcttctcatacttatttcaag |
10349265 |
T |
|
| Q |
521 |
gtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtga |
620 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10349266 |
gtgatttggctcgcttctatttgggcaatctggaaggatcgaaataactgtatattaaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtga |
10349365 |
T |
|
| Q |
621 |
agcgagattctttcttttggctatattcgaatcgtattccgttagcttttggttttcat |
679 |
Q |
| |
|
|| | ||||| ||||| ||||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
10349366 |
agtgggattcattcttatggctatcatctaatcgcattccgttagcttttggttttcat |
10349424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 258 - 679
Target Start/End: Original strand, 11798172 - 11798593
Alignment:
| Q |
258 |
tacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttatccaacctaacggtattctatgtgctggtgggtgtggaaacattgagac |
357 |
Q |
| |
|
|||||||||| | ||||||||| |||| ||||||||| |||| ||||| | ||||| || | || || |||| | |||||||||||| ||||| |
|
|
| T |
11798172 |
tacttcaagatagagttccaaccagagttaatttggtgaaaagacatgttctacaaccgaatgataacctgtgtgtcgatgggtgtggaaattcagagac |
11798271 |
T |
|
| Q |
358 |
atcgaatcatctttttcttggttgtaacctttttggaagtgtttggtacttaatttgtaattggcttggcatttgttatgttccttcatgtcagctttct |
457 |
Q |
| |
|
|| |||||||||| ||||||| ||| ||||||| ||||||||||| || |||||||||||||||| ||||| ||||||||||||| | | | || |
|
|
| T |
11798272 |
gacgtatcatcttttcattggttgcaacatttttgggagtgtttggtatttgatttgtaattggcttgacatttcttatgttccttcaggattggtaact |
11798371 |
T |
|
| Q |
458 |
gatcactttctgcagtctagcaacatggcgggtatgccgagattttctcatacctttttcaaggtgatttggctcgcttctatatgggcaatttggaagg |
557 |
Q |
| |
|
||||||||| | |||| || ||| |||||||||||||||||| ||| |||| | ||| |||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
11798372 |
gatcactttttacagtttactaacttggcgggtatgccgagatcttcccatatttattttaaggtgatttggctcgattctatttgggcaatttggaaaa |
11798471 |
T |
|
| Q |
558 |
atcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtgaagcgagattctttcttttggctatattcgaatcgtat |
657 |
Q |
| |
|
| || || ||| || | |||||||||||||||||||||||||||| ||| ||||| | ||||||| |||| || |||| || | ||||||| |||| |
|
|
| T |
11798472 |
aacggaacaaccgtgtcttcaaaaatgcggtaatagatcctcaaagcatccttgatatagtgaagtttaattcctttctttgactctcttcgaatggtat |
11798571 |
T |
|
| Q |
658 |
tccgttagcttttggttttcat |
679 |
Q |
| |
|
||| || |||||| |||||||| |
|
|
| T |
11798572 |
tccatttgcttttagttttcat |
11798593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 633
Target Start/End: Complemental strand, 12527291 - 12527172
Alignment:
| Q |
514 |
tttcaaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaa |
613 |
Q |
| |
|
|||||| || |||||||| ||||||| ||||||||||||||||||| |||| |||||| | || | |||||||| || ||| ||| | ||| |||||| |
|
|
| T |
12527291 |
tttcaaagttatttggcttgcttctacatgggcaatttggaaggatagaaacaactgtgtctttaccaatgcggttatcgatattcacaacatccttgaa |
12527192 |
T |
|
| Q |
614 |
aaagtgaagcgagattcttt |
633 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
12527191 |
aaagtgaagcgcaattcttt |
12527172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 16631678 - 16631776
Alignment:
| Q |
61 |
tgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggaggtggcttcttgatcctatacatggttacacggttcgtgggacgtatcg |
159 |
Q |
| |
|
|||| |||||| ||| ||| |||||||||| |||| ||||||| |||||||||| | || |||| ||||||||||||| || |||||||||| ||||| |
|
|
| T |
16631678 |
tgctttgttgaataacgttattttgcaggaaaatatccaggactcttggaggtggttgctagatcttatacatggttactcgattcgtgggacatatcg |
16631776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 676
Target Start/End: Original strand, 34504987 - 34505121
Alignment:
| Q |
542 |
tgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtgaagcgagattctttcttttggc |
641 |
Q |
| |
|
|||| ||| |||||||| |||| || ||| | ||||||||||||||||| ||||||| | |||||||| || |||||||| ||| || || ||| |
|
|
| T |
34504987 |
tgggtaatatggaaggagagaaacaattgtgtcttcaaaaatgcggtaatcgatcctcgtaatattcttgacaaggtgaagcggacttcctttttatggt |
34505086 |
T |
|
| Q |
642 |
tatattcgaatcgtattccgttagcttttggtttt |
676 |
Q |
| |
|
||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
34505087 |
tatcttcgaattatattcctttagcttttggtttt |
34505121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 679
Target Start/End: Complemental strand, 33567473 - 33567336
Alignment:
| Q |
542 |
tgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtgaagcgagattctttcttttggc |
641 |
Q |
| |
|
|||||||| ||||||||| |||| ||| || || |||||||||||||| |||||||| | ||||||||||| |||||| ||||||| || || |
|
|
| T |
33567473 |
tgggcaatatggaaggatagaaacaaccgtgccttaaaaaatgcggtaatcgatcctcacaatattcttgaaaaggtgaagatgaattcttttttaaggt |
33567374 |
T |
|
| Q |
642 |
tatattcgaatcgtattccgttagcttttggttttcat |
679 |
Q |
| |
|
||| ||||||| | |||| ||| |||||||||||||| |
|
|
| T |
33567373 |
tatcttcgaattatgttccattaacttttggttttcat |
33567336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 547 - 679
Target Start/End: Complemental strand, 24308594 - 24308462
Alignment:
| Q |
547 |
aatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtgaagcgagattctttcttttggctatat |
646 |
Q |
| |
|
||||||||||||| |||| ||| || | ||||||||||| ||||| |||||||| | ||| |||| || |||||||| ||| || || ||| ||| | |
|
|
| T |
24308594 |
aatttggaaggatagaaacaaccgtgtcttcaaaaatgctgtaatcgatcctcataatatttttgacaaggtgaagcggacttcctttttatggttatct |
24308495 |
T |
|
| Q |
647 |
tcgaatcgtattccgttagcttttggttttcat |
679 |
Q |
| |
|
||| || |||||| |||||||| ||||||||| |
|
|
| T |
24308494 |
tcggattttattcctttagctttcggttttcat |
24308462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 598
Target Start/End: Complemental strand, 24509665 - 24509585
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| || | | ||||| |||| |||||||| ||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
24509665 |
aaggttatttggcttgcctgtgtatggacaatatggaaggagagaaataactgtttattcaaaaatacagtaattgatcct |
24509585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 369 - 676
Target Start/End: Complemental strand, 7639386 - 7639078
Alignment:
| Q |
369 |
tttttcttggttgtaacctttttggaagtgtttggtacttaatttgtaattggcttggcatttgttatgttccttcatgtcagctttctgatcactttct |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7639386 |
tttttcttggttgtaacctttttggaagtgtttggtacttaatttgtaattggcttggcatttgttatgttccttcacgtcagctttctgatcactttct |
7639287 |
T |
|
| Q |
469 |
gcagtctagcaacatggcgggtatgccgagattttctcataccttttt-caaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataa |
567 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7639286 |
gcagtttagcaacatggcgggtatgccgagattttctcatattttttttcaaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataa |
7639187 |
T |
|
| Q |
568 |
ctgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtgaagcgagattctttcttttggctatattcgaatcgtattccgttagct |
667 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7639186 |
ctatatattcaaaaatacggtaatagatcctcaaatcattcttgaaaaagtgaagcgggattctttcttttggctatcttcgaatcgtattccgttagct |
7639087 |
T |
|
| Q |
668 |
tttggtttt |
676 |
Q |
| |
|
||||||||| |
|
|
| T |
7639086 |
tttggtttt |
7639078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 29684865 - 29684956
Alignment:
| Q |
26 |
ttggcgtgggaggaagaaagtgtcaaggagtgtagtgctatgttgagtaatgttgttttgcaggatcatatacaggacttttggaggtggct |
117 |
Q |
| |
|
|||||||||||||| ||| |||| | |||||| || | |||||||||| |||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
29684865 |
ttggcgtgggaggaggaatgtgtgagggagtgctatgttttgttgagtaacgttgttttgcaggatcatatccaggactcttggaggtggct |
29684956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 30044534 - 30044601
Alignment:
| Q |
78 |
ttgttttgcaggatcatatacaggacttttggaggtggcttcttgatcctatacatggttacacggtt |
145 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||| | ||||||||||| |||||||| |||||| |
|
|
| T |
30044534 |
ttgttttgcaggataatattcaggaccagtggaggtggttacttgatcctattcatggttatacggtt |
30044601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 206 - 431
Target Start/End: Complemental strand, 36702 - 36477
Alignment:
| Q |
206 |
aatgtgtggcacaagttagttccttctaaagttgctctctttgcgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatg |
305 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||| || || |||| ||||||||| ||| | ||||||| ||| |||| |||||| ||||| ||| |
|
|
| T |
36702 |
aatgtttggcataagttagttccttctaaagtttctcttttggcatggcacctacttcaaaacagaattccaacaagatcaaacttggtgagaagacatg |
36603 |
T |
|
| Q |
306 |
ttatccaacctaacggtattctatgtgctggtgggtgtggaaacattgagacatcgaatcatctttttcttggttgtaacctttttggaagtgtttggta |
405 |
Q |
| |
|
| | |||||||||| || ||||| | ||||||| ||||||||||| |||| |||||||| |||||| | | ||||| ||||||||||| |
|
|
| T |
36602 |
tgcttcaacctaacgataacttatgtatcgaaaggtgtggtaacattgagacgacgaaccatcttttcattggttccgatatatttgggagtgtttggta |
36503 |
T |
|
| Q |
406 |
cttaatttgtaattggcttggcattt |
431 |
Q |
| |
|
|||| | ||| ||||||||||||||| |
|
|
| T |
36502 |
cttagtctgtcattggcttggcattt |
36477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 542 - 622
Target Start/End: Complemental strand, 36366 - 36286
Alignment:
| Q |
542 |
tgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctcaaatcattcttgaaaaagtgaag |
622 |
Q |
| |
|
|||||||| |||||||| |||| ||| || | || |||||| ||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
36366 |
tgggcaatatggaaggaaagaaacaaccgtgtcttaaaaaatacggtaatcgatcctcatagtattcttgaaaaagtgaag |
36286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 600
Target Start/End: Complemental strand, 9194885 - 9194803
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcctca |
600 |
Q |
| |
|
||||| || |||||||||| | | ||| ||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
9194885 |
aaggttatctggctcgcttgtgtttggacaatttggaaggagagaaacaactgtatcttcaaaaatgcggtaattgatcctca |
9194803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 9195192 - 9195082
Alignment:
| Q |
210 |
tgtggcacaagttagttccttctaaagttgctctctttgcgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttat |
309 |
Q |
| |
|
|||||||||| || |||||| | |||||| |||||||||| ||||| || | |||| | | |||| || ||| |||||||||||||| || ||||||| |
|
|
| T |
9195192 |
tgtggcacaaattggttcctacaaaagtttctctctttgcttggcgtctcttgaaagatagaattccgacaagatcaaatttggtgcgacgacatgttat |
9195093 |
T |
|
| Q |
310 |
ccaacctaacg |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
9195092 |
ccaacctaacg |
9195082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 598
Target Start/End: Complemental strand, 26397640 - 26397560
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| || | | |||||||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
26397640 |
aaggttatttggcttgcctgtgtatgggcaatatggaaggagagaaataactgtttattcaaaaatacagtaattgatcct |
26397560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 598
Target Start/End: Original strand, 5195283 - 5195363
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| |||| ||| ||||||||||||||||| | || |||||||| |||||||||||||| || |||||| |
|
|
| T |
5195283 |
aaggttatttggcttgcttgtatttgggcaatttggaaggagaggaacaactgtatcttcaaaaatgcggttattgatcct |
5195363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 598
Target Start/End: Complemental strand, 5675844 - 5675764
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| || | | |||||||||| |||||||| ||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
5675844 |
aaggttatttggcttgcctgtgtatgggcaatatggaaggagagaaataactgtatcttcaaaaatgtggtaattgatcct |
5675764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 4103824 - 4103771
Alignment:
| Q |
119 |
cttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaacatct |
172 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
4103824 |
cttgatccgatacatggatactcggttcgtgggacgtatcgctttctaacatct |
4103771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 598
Target Start/End: Complemental strand, 4103397 - 4103345
Alignment:
| Q |
546 |
caatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
4103397 |
caatttggaaggagagaaacaactgtatcttcaaaaatgcggtaattgatcct |
4103345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 29359758 - 29359808
Alignment:
| Q |
119 |
cttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaaca |
169 |
Q |
| |
|
||||||||||| ||||| ||| |||||| ||||||||||||||||| |||| |
|
|
| T |
29359758 |
cttgatcctattcatggctactcggttcatgggacgtatcgtttccaaaca |
29359808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 20209571 - 20209679
Alignment:
| Q |
81 |
ttttgcaggatcatatacaggacttttggaggtggcttcttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaacatctgatgcaga |
180 |
Q |
| |
|
|||||||||| |||| ||||| | |||||| ||| | | |||||| ||| |||||| | ||| |||||||||||||||||||||| |||| || ||| |
|
|
| T |
20209571 |
ttttgcaggaaaatattcaggattcttggagatggttgttggatcctgcacacggttactcagttggtgggacgtatcgtttcctaacttctgttgaaga |
20209670 |
T |
|
| Q |
181 |
accggtggt |
189 |
Q |
| |
|
|||| |||| |
|
|
| T |
20209671 |
accgttggt |
20209679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 22103594 - 22103702
Alignment:
| Q |
81 |
ttttgcaggatcatatacaggacttttggaggtggcttcttgatcctatacatggttacacggttcgtgggacgtatcgtttcctaacatctgatgcaga |
180 |
Q |
| |
|
|||||||||| |||| ||||| | |||||| ||| | | |||||| ||| |||||| | ||| |||||||||||||||||||||| |||| || ||| |
|
|
| T |
22103594 |
ttttgcaggaaaatattcaggattcttggagatggttgttggatcctgcacacggttactcagttggtgggacgtatcgtttcctaacttctgttgaaga |
22103693 |
T |
|
| Q |
181 |
accggtggt |
189 |
Q |
| |
|
|||| |||| |
|
|
| T |
22103694 |
accgttggt |
22103702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 533 - 588
Target Start/End: Original strand, 15353096 - 15353151
Alignment:
| Q |
533 |
gcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggt |
588 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
15353096 |
gcttgtatttgggcaatttggaaggagagaaacaactgtatattcaaaaatgcggt |
15353151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 24231 - 24298
Alignment:
| Q |
78 |
ttgttttgcaggatcatatacaggacttttggaggtggcttcttgatcctatacatggttacacggtt |
145 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||| | ||||||||||| |||||||| |||||| |
|
|
| T |
24231 |
ttgttttgcaggataatattcaggaccagtggaggtggttacttgatcctattcatggttatacggtt |
24298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1251 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1251
Description:
Target: scaffold1251; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 598
Target Start/End: Complemental strand, 1416 - 1336
Alignment:
| Q |
518 |
aaggtgatttggctcgcttctatatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatcct |
598 |
Q |
| |
|
||||| |||||||| || | | |||||||||| |||||||| |||||| |||| |||||||||||| ||||| |||||| |
|
|
| T |
1416 |
aaggttatttggcttgcctttgtatgggcaatatggaaggagagaaatagctgtttattcaaaaatgtagtaattgatcct |
1336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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