View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7928_low_2 (Length: 474)
Name: NF7928_low_2
Description: NF7928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7928_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 198 - 458
Target Start/End: Original strand, 12119266 - 12119532
Alignment:
| Q |
198 |
tgttgaaattgatcagttaatgat---accgagaagtttttaatccggaaacaacagcaatatccatcatcacataaaggatattcctctaattcctttc |
294 |
Q |
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| T |
12119266 |
tgttgaaattgatcggttaatgatgatactgagaagtttttaatccggaaacaataacaatatccatcatcacataaagcatattcctgtcatttctttc |
12119365 |
T |
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| Q |
295 |
aaagatgtcactccaaagccattcnnnnnnnn----gacgtcacttcaaaatttcttccataagaaatcaaattaacttttttaaatgtgagattgaagt |
390 |
Q |
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| T |
12119366 |
aaagacgtcactccaaagccattcaaaaaaaaaaaagacgtcactccaaaatttcttacataagaaatcaaattaacttttttaaatgtgagatagaagt |
12119465 |
T |
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| Q |
391 |
gagaataatcaaattaaactaaacacataatacaaaataaataagaagattgagttatgagaaatagt |
458 |
Q |
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| T |
12119466 |
gagaata-tcaaattaaactaaacacataatacaaaataaataagaagattgagttatgagaaatagt |
12119532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 12119088 - 12119185
Alignment:
| Q |
21 |
tttttcaaaagaagaacttaaaatatttctaaatcaatgacttgattaaatatgttgactgtaccagtcttaaattatctataaatcacgactttgtc |
118 |
Q |
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| T |
12119088 |
tttttcaaaagaagaacttaaaatatttataaatcaatgacttgattaaatatgttgactgtaccagtcttaaattatctataaatcacgactttgtc |
12119185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 12099517 - 12099564
Alignment:
| Q |
51 |
aaatcaatgacttgattaaatatgttgactgtaccagtcttaaattat |
98 |
Q |
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| T |
12099517 |
aaatcaaagacttgattaaatatgttgactgtaccaatcttaaattat |
12099564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 6679933 - 6679981
Alignment:
| Q |
231 |
tttttaatccggaaacaacagcaatatccatcatcacataaaggatatt |
279 |
Q |
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| T |
6679933 |
tttttattctggaaacaacaacaatattcatcatcacataaagcatatt |
6679981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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