View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7928_low_3 (Length: 437)

Name: NF7928_low_3
Description: NF7928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7928_low_3
NF7928_low_3
[»] chr6 (3 HSPs)
chr6 (6-429)||(20493464-20493887)
chr6 (67-356)||(20475710-20475999)
chr6 (159-356)||(20517630-20517833)
[»] chr1 (1 HSPs)
chr1 (176-266)||(13072237-13072327)
[»] chr3 (1 HSPs)
chr3 (67-116)||(25495124-25495173)


Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Original strand, 20493464 - 20493887
Alignment:
Q  6 aggaagaaccggtgatttaaagtgtccggttaccgtcctacaagatcgtagagaagtcaaaaatggtctaccagtgaaattcaccataccaggaataagt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20493464 aggaagaaccggtgatttaaagtgtccggttaccgtcctacaagatcgtagagaagtcaaaaatggtctaccagtgaaattcaccataccaggaataagt 20493563  T
Q  106 cctggtataattttcactggtacaccacttgagatcgagtacacgaaaaaacctagttgtgctgcatcaacaaaatggttaatatttgttgataatgtta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20493564 cctggtataattttcactggtacaccacttgagatcgagtacacgaaaaaacctagttgtgctgcatcaacaaaatggttaatatttgttgataatgtta 20493663  T
Q  206 ttggaaaagcttgtattggtattggtggtcctgaaaattaccctggtgtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggatttgg 305  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20493664 ttggaaaagcttgtattggtattggtggtcctgaaaattatcctggtgtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggatttgg 20493763  T
Q  306 ttataacttagggttttgtgttactggatctcctacttgtttggatattggaagatttgataatgatgaagctggaagacgtttgaatttgactgaacat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20493764 ttataacttagggttttgtgttactggatctcctacttgtttggatattggaagatttgataatgatgaagctggaagacgtttgaatttgactgaacat 20493863  T
Q  406 gaggtttatcaagttgtctttgtt 429  Q
    ||||||||||||||||| ||||||    
T  20493864 gaggtttatcaagttgtgtttgtt 20493887  T

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Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 67 - 356
Target Start/End: Original strand, 20475710 - 20475999
Alignment:
Q  67 aatggtctaccagtgaaattcaccataccaggaataagtcctggtataattttcactggtacaccacttgagatcgagtacacgaaaaaacctagttgtg 166  Q
    |||||| |||||||||||||||  ||||||| |||||| ||||||||||| ||||||||||||||| |||| ||||||| ||| || || |||| ||| |    
T  20475710 aatggtgtaccagtgaaattcagtataccagaaataagccctggtataatcttcactggtacaccaattgatatcgagttcacaaagaagcctaattgcg 20475809  T
Q  167 ctgcatcaacaaaatggttaatatttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaaaattaccctggtgtgcaaacattgaa 266  Q
     || |||| |||||||||| ||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||||| |||||| |   ||||||||     
T  20475810 ttgaatcatcaaaatggttgatatttgttgatagtgttattcaaaaagcttgtgttggtattggtggtcctgaaaattatcctggttttagaacattgag 20475909  T
Q  267 gggaaaatttaatattcagaaacatgcatctggatttggttataacttagggttttgtgttactggatctcctacttgtttggatattgg 356  Q
     || | |||||||||| |||| |||| |||||||||||||||||   | || | |||||| |  |  |||||||||||||||||||||||    
T  20475910 tggcacatttaatattgagaagcatgaatctggatttggttataggcttggatattgtgtgaaagattctcctacttgtttggatattgg 20475999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 356
Target Start/End: Original strand, 20517630 - 20517833
Alignment:
Q  159 tagttgtgctgcatcaacaaaatggttaatatttgttgataatgttatt---ggaaaagcttgtattggtattggtggtcctgaaaattaccct---ggt 252  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||| |      ||| | | | |||||||||||||||||||||| || |||   |||    
T  20517630 tagttgtgttgaatcatcaaaatggttgatatttgttgataatgttaataacaacaaatcatttgttggtattggtggtcctgaaaactatcctcaaggt 20517729  T
Q  253 gtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggatttggttataacttagggttttgtgttactggatctcctacttgtttggata 352  Q
       |||| |||||| ||||||||||||||| |||||  || ||||| |  || |||||| || || ||||||||||  | | |||||| ||||| |||||    
T  20517730 acacaaatattgaatggaaaatttaatattaagaaatctggatctgaaaatgcttataagtttggattttgtgttaaggaaactcctagttgttgggata 20517829  T
Q  353 ttgg 356  Q
    ||||    
T  20517830 ttgg 20517833  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 13072327 - 13072237
Alignment:
Q  176 caaaatggttaatatttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaaaattaccctggtgtgcaaacattgaa 266  Q
    |||||||||| |||||||||||||||||||||  |||| ||||| |||||||||||||||| ||||| || |||||| |||||| ||||||    
T  13072327 caaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtggtccagaaaactatcctggtatgcaaatattgaa 13072237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 25495173 - 25495124
Alignment:
Q  67 aatggtctaccagtgaaattcaccataccaggaataagtcctggtataat 116  Q
    ||||| |||| ||||||||| | ||||||||||||||| |||||||||||    
T  25495173 aatggcctacaagtgaaatttatcataccaggaataagccctggtataat 25495124  T

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