View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7928_low_4 (Length: 404)
Name: NF7928_low_4
Description: NF7928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7928_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 42636451 - 42636838
Alignment:
| Q |
1 |
ttattgttagcaatctctcgtagttgtaagatgaactaaacagaacagattattcagtagtgcttatttcagttcataatgatatatttagaaatccaaa |
100 |
Q |
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| T |
42636451 |
ttattgttagcaatctctcgtagttgtaagatgaactaaacagaacagattattcaatagtgcttatttcagttcataatgatatatttagaaatccaag |
42636550 |
T |
|
| Q |
101 |
gacatattgtggcactaatactatcatcttgcttagataaagattattcaactatttcaaggaccttatatagcactgccctgaaaaatattacatgcgt |
200 |
Q |
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| T |
42636551 |
gacatattgtggcactaatactatcatcttgcttagataaagattattcaactatttcaaggaccttatatagcactgccctgaaaaatattacatgcgg |
42636650 |
T |
|
| Q |
201 |
atttacttcaagaatttattgcggactttgggataacattgcaggaaatgtgttgtgtctacaaagcacaataaatttagaaggcaatttctgtcgaatt |
300 |
Q |
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| T |
42636651 |
atttacttcaagaatttattgcggaatttgggataacattgcaggaaatgtgttgtgtctacaaagcacaataaatttagaaggcaatttctgtcgaatt |
42636750 |
T |
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| Q |
301 |
tgaaaatccacgaaggttttagggtgtacctgagatccaaagtcctcataaattttcgcaggaaataagaacatatgaatgaacattg |
388 |
Q |
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| T |
42636751 |
tgaaaatccactaaggttttagggtgtacctgagatccaaagtcctcgtaaattttcgcaggaaataagaacatatgaatgaacattg |
42636838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 20458532 - 20458569
Alignment:
| Q |
122 |
tatcatcttgcttagataaagattattcaactatttca |
159 |
Q |
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| T |
20458532 |
tatcatcttgcttagataaagatcattcaactatttca |
20458569 |
T |
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