View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7928_low_6 (Length: 348)
Name: NF7928_low_6
Description: NF7928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7928_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 12068073 - 12067756
Alignment:
| Q |
13 |
aatatgatcacctagtttcaattgaaattacctaatcctatattgatacagtcacattaaattttccagatattgtgtcttccttattcagaaatgagta |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12068073 |
aatatgatcacctagtttcaattgaaaatacctaatcctatattgatacagtcacattaaattttccagatattgtgtcttccttattcagaaatgagta |
12067974 |
T |
|
| Q |
113 |
tggatatttttgaaaccagttccaatgatccaaaaattaatgcaaacttatttcatcttgttttgggataaacatgatattttttgattatgtgttttct |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
12067973 |
tggatatttttgaaaccatttccaatgatccaaatattaatgcaaacttacttcatcttgttttgggataaaaatgatattttttgattctgtgttttct |
12067874 |
T |
|
| Q |
213 |
ctgtcaattattaatgaattgcattggatggaaacacttcttggtatgatgannnnnnngctttgacaatttttatgggatatggttgtgttaattgttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12067873 |
ctgtcaattattaatgaattgcattggatggaaacacttcttggtatgttg-tttttttgctttgacaatttttatgggatatggttgtggtaattgttt |
12067775 |
T |
|
| Q |
313 |
atctttgatgttctactct |
331 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
12067774 |
atctttgatgttctactct |
12067756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 52 - 331
Target Start/End: Original strand, 15608716 - 15608998
Alignment:
| Q |
52 |
atattgatacagtcacattaaattttccagatattgtgtcttccttattcagaaatgagtatggatatttttgaaaccagttccaatgatccaaaaatta |
151 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||||||| | |||||||||| |||||||| |
|
|
| T |
15608716 |
atattgatacagttgcattaaattttccagatcttgtgtcctccttattcacaaatgagtagcgatatttttgaaactatgtccaatgatcaaaaaatta |
15608815 |
T |
|
| Q |
152 |
atgcaaacttatttcatcttgttttgggataaacatgatattttttgatt--atgtgttttctctgtcaattattaatgaattgcattggatggaaacac |
249 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
15608816 |
atgcaaacttacttcattttgtttttggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacac |
15608915 |
T |
|
| Q |
250 |
ttcttggtatgatg-annnnnnngctttgacaatttttatgggatatggttgtgttaattgtttatctttgatgttctactct |
331 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15608916 |
ttcttggtatgatgtttttttttgctttgacattttttatgggatatggttgtgttaattgtttatctttgatgttcgactct |
15608998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 67 - 331
Target Start/End: Original strand, 15628753 - 15629021
Alignment:
| Q |
67 |
cattaaattttccagatattgtgtcttccttattcagaaatgagtatggatatttttgaaaccagttccaatgatccaaaaattaatgcaaacttatttc |
166 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| ||||||||| | |||||||||||| | |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
15628753 |
cattaaattttccagatcttgtgtcctccttattcacaaatgagtaacggtatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttc |
15628852 |
T |
|
| Q |
167 |
atcttgttttgggataaacatgatattttttgatt--atgtgttttctctgtcaattattaatgaattgcattggatggaaacacttcttggtatgatg- |
263 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
15628853 |
attttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgagaacacttcttggtatgatgt |
15628952 |
T |
|
| Q |
264 |
-annnnnnngctttgacaatttttatgggatatggttgtgttaattgtttatctttgatgttctactct |
331 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15628953 |
ttttattttgctttgacattttttatgggatatggctgtgttaattgtttatctttgatgttctactct |
15629021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 52 - 331
Target Start/End: Original strand, 15652581 - 15652865
Alignment:
| Q |
52 |
atattgatacagtcacattaaattttccagatattgtgtcttccttattcagaaatgagtatggatatttttgaaaccagttccaatgatccaaaaatta |
151 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| | |||||||| ||||||||| ||||||||||| || | |||||||||| |||||||| |
|
|
| T |
15652581 |
atattgatacagttgcattaaattttccagatcttgtgtcctgcttattcacaaatgagtaacgatatttttgatactatgtccaatgatcaaaaaatta |
15652680 |
T |
|
| Q |
152 |
atgcaaacttatttcatcttgttttgggataaacatgatattttttgatt--atgtgttttctctgtcaattattaatgaattgcattggatggaaacac |
249 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||||||||||| |||| ||||||||||||| || || ||||| |||||||||||||| |||||| |
|
|
| T |
15652681 |
atgcaaacttacttcattttgttttgggttaaacatgatatttttcgattcaatgtgttttctctatctataattaactaattgcattggatgaaaacac |
15652780 |
T |
|
| Q |
250 |
ttcttggtatgatg---annnnnnngctttgacaatttttatgggatatggttgtgttaattgtttatctttgatgttctactct |
331 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15652781 |
ttcttggtatgatgtttttttttttgctttgacatttttgatgggatatggttgtgttaattgtttatctttgatgttctactct |
15652865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 52 - 320
Target Start/End: Original strand, 15650590 - 15650859
Alignment:
| Q |
52 |
atattgatacagtcacattaaattttccagatattgtgtcttccttattcagaaatgagtatggatatttttgaaaccagttccaatgatccaaaaatta |
151 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| | |||||||||| |||||||| |
|
|
| T |
15650590 |
atattgatacagttgcattaaattttccagatcttgtgtcctccttattcagaaatgagtaacgatatttttgaaactatgtccaatgatcaaaaaatta |
15650689 |
T |
|
| Q |
152 |
atgcaaacttatttcatcttgttttgggataaacatgatattttttgatt--atgtgttttctctgtcaattattaatgaattgcattggatggaaacac |
249 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||| |||| ||||||||| |||||| |
|
|
| T |
15650690 |
atgcaaacttacttcattttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattccattggatgaaaacac |
15650789 |
T |
|
| Q |
250 |
ttcttggtatgatg-annnnnnngctttgacaatttttatgggatatggttgtgttaattgtttatctttga |
320 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15650790 |
ttcttggtatgatgtttttttttgctttgacattttttatgggatat--ctgtgttaattgtttatctttga |
15650859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 67 - 320
Target Start/End: Original strand, 15626841 - 15627097
Alignment:
| Q |
67 |
cattaaattttccagatattgtgtcttccttattcagaaatgagtatggatatttttgaaaccagttccaatgatccaaaaattaatgcaaacttatttc |
166 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| ||||||||| | |||||||||||| | |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
15626841 |
cattaaattttccagatcttgtgtcctccttattcacaaatgagtaacggtatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttc |
15626940 |
T |
|
| Q |
167 |
atcttgttttgggataaacatgatattttttgatt--atgtgttttctctgtcaattattaatgaattgcattggatggaaacacttcttggtatgatg- |
263 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
15626941 |
attttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattccattggatgaaaacacttcttggtatgatgt |
15627040 |
T |
|
| Q |
264 |
annnnnnngctttgacaatttttatgggatatggttgtgttaattgtttatctttga |
320 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
15627041 |
ttttttttgctttgacattttttctgggatatctttgtgttaattgtttatctttga |
15627097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 15640331 - 15640562
Alignment:
| Q |
104 |
aaatgagtatggatatttttgaaaccagttccaatgatccaaaaattaatgcaaacttatttcatcttgttttgggataaacatgatattttttgatt-- |
201 |
Q |
| |
|
||||||||| ||| || ||||||| | |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
15640331 |
aaatgagtaacgattttcttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatatttttggattca |
15640430 |
T |
|
| Q |
202 |
atgtgttttctctgtcaattattaatgaattgcattggatggaaacacttcttggtatgatg--annnnnnngctttgacaatttttatgggatatggtt |
299 |
Q |
| |
|
|| ||||||||||||| || | ||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
15640431 |
atatgttttctctgtctataagtaactaattgcattggatgaaaacacttcttggtatgatgttttttttttgctttgacattttttatgggatatggtt |
15640530 |
T |
|
| Q |
300 |
gtgttaattgtttatctttgatgttctactct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15640531 |
gtgttaattgtttatctttgatgttctactct |
15640562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 329
Target Start/End: Complemental strand, 15971637 - 15971359
Alignment:
| Q |
52 |
atattgatacagtcacattaaattttccagatattgtgtcttccttattcagaaatgagtatggatatttttgaaaccagttccaatgatccaaaaatta |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||| ||||||||||||| | |||| |||||||||||||| |
|
|
| T |
15971637 |
atattgatacagtcacattaaattttccagatctcgcgtcttccttattcacaaatgagtaacaatatttttgaaactatatccagtgatccaaaaatta |
15971538 |
T |
|
| Q |
152 |
atgcaaacttatttcatcttgttttgggataaacatgatattttttgatt--atgtgttttctctgtcaattattaatgaattgcattggatggaaacac |
249 |
Q |
| |
|
||||||||||| || || |||| ||| ||||||||||||||||| || ||||||||||| |||| || ||||| |||| ||| || ||||||| |
|
|
| T |
15971537 |
atgcaaacttacttaattttgtgctggcataaacatgatatttttgttttcaatgtgttttctttgtctataattaactaattatattaaatagaaacac |
15971438 |
T |
|
| Q |
250 |
ttcttggtatgatgannnnnnngctttgacaatttttatgggatatggttgtgttaattgtttatctttgatgttctact |
329 |
Q |
| |
|
|| ||||||||||| | ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15971437 |
tttttggtatgatg-tttttttgttttgacattgtttgtgggatatggttgtgttaattgtttatctttgatgttctact |
15971359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 15617153 - 15617384
Alignment:
| Q |
104 |
aaatgagtatggatatttttgaaaccagttccaatgatccaaaaattaatgcaaacttatttcatcttgttttgggataaacatgatattttttgatt-- |
201 |
Q |
| |
|
||||||||| ||| || ||||||| | ||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||| |||| |
|
|
| T |
15617153 |
aaatgagtaacgattttcttgaaactatgtccaatgataaaaaaattaatgcaaacttactttattttgttttgggataaacatgatatttttggattca |
15617252 |
T |
|
| Q |
202 |
atgtgttttctctgtcaattattaatgaattgcattggatggaaacacttcttggtatgatg--annnnnnngctttgacaatttttatgggatatggtt |
299 |
Q |
| |
|
|| ||||||||||||| || | ||| |||||||||||||| |||||||||||||||||||| || |||||| |||||||||||||| | | |
|
|
| T |
15617253 |
atatgttttctctgtctataagtaactaattgcattggatgaaaacacttcttggtatgatgttttttttttgcattgacattttttatgggatattggt |
15617352 |
T |
|
| Q |
300 |
gtgttaattgtttatctttgatgttctactct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15617353 |
gtgttaattgtttatctttgatgttctactct |
15617384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 15990376 - 15990255
Alignment:
| Q |
80 |
agatattgtgtcttccttattcagaaatgagtatggatatttttgaaaccagttccaatgatccaaaaattaatgcaaacttatttcatcttgttttggg |
179 |
Q |
| |
|
|||| |||| ||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
15990376 |
agatcttgtatcttccttattcaaaagtgagtaacaatatttttgaaactgtatccaatgatccaaaaattaatgcaaacttacttcattttgttttggg |
15990277 |
T |
|
| Q |
180 |
ataaacatgatattttttgatt |
201 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
15990276 |
ataaacatgatatttttggatt |
15990255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 138 - 321
Target Start/End: Complemental strand, 12063171 - 12062991
Alignment:
| Q |
138 |
tgatccaaaaattaatgcaaacttatttcatcttgttttgggataaacatgatattttttgatt--atgtgttttctctgtcaattattaatgaattgca |
235 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||| ||||| ||| | |||| || ||||| ||| || |
|
|
| T |
12063171 |
tgatccaaaaattaatgcagacttacttcattttgttttgggataaacatgatatttttggattcaatgtgctttgtttgtctataattaacttattaca |
12063072 |
T |
|
| Q |
236 |
ttggatggaaacacttcttggtatgatgannnnnnngctttgacaatttttatgggatatggttgtgttaattgtttatctttgat |
321 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
12063071 |
ttggatggaaaca---cttggtatgat-aattttttgctttgacaatgtttgt-ggatatggttgtgttaattgtttatctttgat |
12062991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 12063233 - 12063176
Alignment:
| Q |
52 |
atattgatacagtcacattaaattttccagatattgtgtcttccttattcagaaatga |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
12063233 |
atatttatacagtcacattaaattttccagatcttgtgtcttgcttattcacaaatga |
12063176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 15990160 - 15990102
Alignment:
| Q |
272 |
gctttgacaatttttatgggatatggttgtgttaattgtttatctttgatgttctactc |
330 |
Q |
| |
|
||||||||| | ||| || ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15990160 |
gctttgacattgtttgtgagatatggttatgttaattgtttatctttgatgttctactc |
15990102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 12138944 - 12138991
Alignment:
| Q |
284 |
tttatgggatatggttgtgttaattgtttatctttgatgttctactct |
331 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
12138944 |
tttatgggatatggttgtgtctattgcttatctttgatgttctgctct |
12138991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 15995154 - 15995107
Alignment:
| Q |
52 |
atattgatacagtcacattaaattttccagatattgtgtcttccttat |
99 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| |||| |||||||||| |
|
|
| T |
15995154 |
atattgatacagtcacaataaattttcaagatcttgtatcttccttat |
15995107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 12138823 - 12138893
Alignment:
| Q |
115 |
gatatttttgaaaccagttccaatgatccaaaaattaatgcaaacttatttcatcttgttttgggataaac |
185 |
Q |
| |
|
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| T |
12138823 |
gatatttttgaaactacatccaatgatccaaatattactgctaacttgcttcattttgttttaggataaac |
12138893 |
T |
|
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