View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7929_high_5 (Length: 457)
Name: NF7929_high_5
Description: NF7929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7929_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 440
Target Start/End: Complemental strand, 2142544 - 2142110
Alignment:
| Q |
4 |
gagtttcgtgttgttaaatgacacaacagttatatacattcaagtgtctatgaatctcatatacatgaggctccaatacaacttcaatacatcgtactac |
103 |
Q |
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||||||| || ||||||||||||||||||||||||| | |||||||||||||||||| || ||| ||| ||||||||||||||||||| ||| ||||||| |
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| T |
2142544 |
gagtttcatgatgttaaatgacacaacagttatatatagtcaagtgtctatgaatcttatctacgtgaagctccaatacaacttcaatgcattgtactac |
2142445 |
T |
|
| Q |
104 |
aacatgcagtttcggtgttgacttgcgttcatatctttcatattacaatttggacattattagannnnnnnnnnagaggatttgaatattagttggatga |
203 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||| |||||||||||| |
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| T |
2142444 |
aacatgcagtttcgatgttgacttgcgttcatatctttcatactataatttggacat-attagattttttttt-agaggatttgaatgttagttggatga |
2142347 |
T |
|
| Q |
204 |
gctaaaaaattaacaaaagcaccacaatttttagtgaagcatgacaaatttcatcttcctttacaaattactttgagggaaatgcacgactacaaataaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2142346 |
gctaaaaaattaacaaaagcaccacaatttttagtgaagcatggcaaatttcatcttcctttacaaattactttgagggaaatgcacgactacaaataaa |
2142247 |
T |
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| Q |
304 |
attcaccctacgaataatttttatgataaagtaacttggtaattgaaatgctatagaggatcaacttgtgacataattaggattgtatgcatgcatctat |
403 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2142246 |
attcaccctactaataatttttatgataaagtaacttggtaattgaaatgctatagaggatcaacttgtgacataattaggattgtatgcatgcatctat |
2142147 |
T |
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| Q |
404 |
gagactgttttactgaatttgatttgatcattagtag |
440 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
2142146 |
gagactgttttactgaatttgatttgattattagtag |
2142110 |
T |
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