View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7929_low_1 (Length: 612)
Name: NF7929_low_1
Description: NF7929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7929_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 8564342 - 8564920
Alignment:
| Q |
1 |
atgtaataactcaaacaattcgtatatttttccccttcaatgaggtttgatctctagtcatttaatcctatcaactcttataaatcagttgagttaccaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8564342 |
atgtaataactcaagcaattcgtatatttttccccttcaatgaggtttgatctctagtcatttaatcctatcaactcctataaatcagttgagttaccaa |
8564441 |
T |
|
| Q |
101 |
atctccaaacaattcatagaatgaaagttgtatataacataaaaagttaacatgtgaaaatgcaaccatttatgcaatttaaaacgtcgtccgacttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8564442 |
atctccaaacaattcatagaatgaaagttgtatataacataaaaagttaacatgtgaaaatgcaaccatttatgcaatttaaaacgtcgtccgacttgtt |
8564541 |
T |
|
| Q |
201 |
ccatttattctcaatgttttgctcctatggaaggggttctcgactcgtaaattgttttcctttgatttgacattttgtggtatgattgatctgaatgccg |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8564542 |
ccatttattctcggtgttttgctcctatggaaggggttctcgactcgcaaattgttttcctttgatttgacattttgtggtatgattgatctgaatatcg |
8564641 |
T |
|
| Q |
301 |
tgaaatgaaactatgttctcattcaagattgtgattgagcaattggcagatcgtattaatctctcttctccaaaatgatttttgggtaagtcaatcgatt |
400 |
Q |
| |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8564642 |
tgaaatgaagctacgttctcattcaagattgtgattgagcaattggcagattgtattaatctctcttctccaaaatgatttttgggtaagtcaatcgatt |
8564741 |
T |
|
| Q |
401 |
ttctttttacgctctacgagtgggtagttgaactctccctctatttggttagacagtcttttgtggtgtgggtctttaatccctgtaacttttcgcattc |
500 |
Q |
| |
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| T |
8564742 |
ctctttttacgctctacaagtgggtagttgaaccctccctctatttggttagacggttttttgtggtgtgggtctttaatccctataacttttcgcattc |
8564841 |
T |
|
| Q |
501 |
ttatttgtaatgactttgagtacctaatgttagccatttatcattgatatattactccatctgtccctatatgtaagca |
579 |
Q |
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||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||| | | ||||| |||||||||||| |
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|
| T |
8564842 |
ttatttgtaatgagtttgagtacctgatgttagccctttatcattaatatattacttcctttgtccttatatgtaagca |
8564920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 595
Target Start/End: Complemental strand, 33810682 - 33810650
Alignment:
| Q |
563 |
gtccctatatgtaagcacaattttcctctaata |
595 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
33810682 |
gtccctatatgtaagcacaattttcctctaata |
33810650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 595
Target Start/End: Original strand, 28885492 - 28885524
Alignment:
| Q |
563 |
gtccctatatgtaagcacaattttcctctaata |
595 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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|
| T |
28885492 |
gtccctatatgtaagcaccattttcctctaata |
28885524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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