View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7929_low_2 (Length: 601)

Name: NF7929_low_2
Description: NF7929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7929_low_2
NF7929_low_2
[»] chr6 (6 HSPs)
chr6 (20-590)||(9656370-9656940)
chr6 (299-589)||(9630496-9630802)
chr6 (305-469)||(9615955-9616118)
chr6 (478-589)||(9640540-9640649)
chr6 (298-440)||(9640360-9640501)
chr6 (491-590)||(9616157-9616256)
[»] chr7 (1 HSPs)
chr7 (308-424)||(33643233-33643349)


Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 20 - 590
Target Start/End: Original strand, 9656370 - 9656940
Alignment:
Q  20 cgaactgatttgaaccgctaatggtcattcatttttcccnnnnnnnn---ctttttaagaacttatttgttatcagtcatccgattaaactatggttcaa 116  Q
    |||||||||||||||||||||||||| ||||||||||||           |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9656370 cgaactgatttgaaccgctaatggtcgttcatttttcccaaaaaaaaaaactttttaagaacttatttgttatcagtcatccgattcaactatggttcaa 9656469  T
Q  117 cctgtctccggtccggttttaaaaacattgatccgtatttcactgaaactttatgtaatatcaaggattgtgatgcaaccacaaaatggctatggcaatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9656470 cctgtctccggtccggttttaaaaacattgatccgtatttcactgaaactttatgtaatatcaaggattgtgatgcaaccacaaaatggctatggcaatt 9656569  T
Q  217 tgaaatggttgcaaattttcgcattggttgtatttgaatacacaatttgacctataagggtatatacatgaaacataatatattatcatgatctatacct 316  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9656570 tgaaatggttgcaaattttcgcattggttgtatttgaat--acaatttgacctataagggtatatacatgaaacataatatattatcatgatctatacct 9656667  T
Q  317 cttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9656668 cttcggcagtgctggcaacagcatcaaaaccaatgtatgcaaaaaaagctgttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctatt 9656767  T
Q  417 aattaaaacaagagataaatattattcagtaacctgaagagaccaaatatagagtgggggtaaagatgtaaaagttaccctgttgggagtttatatccaa 516  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9656768 -attaaaacaagagataaatattattcagtaacctgaagagaccaaatatagagtgggggtaaagatgtaaaagttaccctgttgggagtttatatccaa 9656866  T
Q  517 tccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattcactgatgtc 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9656867 tccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattcactgatgtc 9656940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 299 - 589
Target Start/End: Original strand, 9630496 - 9630802
Alignment:
Q  299 ttatcatgatctatacctcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctacccc 398  Q
    ||||||| ||| |||||||||| |||||||||||||  || |||||||| || |||||       || |||||||||| ||||||||||||||||| |||    
T  9630496 ttatcattatcaatacctcttcagcagtgctggcaattgcttcaaaacctatatatgcaaaaaatgctgttgcagaactagcaaccattccatctatccc 9630595  T
Q  399 aaaaggaaaatacctattaattaaaacaagagataaatattattcagtaacctgaagagaccaaatatag----agtgggggt---------aaagatgt 485  Q
    ||| |||||||||||| |||||||||||||| | |||||||||||| |||| ||||||||| ||| ||||    ||| ||| |         ||||||||    
T  9630596 aaatggaaaataccta-taattaaaacaagatacaaatattattcaataacttgaagagacgaaaaatagatgtagtagggatgtgttgaagaaagatgt 9630694  T
Q  486 a----aaagttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattc 581  Q
    |    |   ||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||    
T  9630695 agattacgcttaccctttagggagttcatatccaatccatccagttttgaatcccaaataaccaccagctactatgacaaacatcaaagcacatatattc 9630794  T
Q  582 actgatgt 589  Q
    | ||||||    
T  9630795 attgatgt 9630802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 305 - 469
Target Start/End: Original strand, 9615955 - 9616118
Alignment:
Q  305 tgatctatacctcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaagg 404  Q
    ||||||||||||||||||||||||||||||  || |||||||| ||||||||       || |||||||||| |||||||||||||| ||||||||| ||    
T  9615955 tgatctatacctcttcggcagtgctggcaattgcttcaaaacctatgtatgcaaaaaaggctgttgcagaactagcaaccattccatttaccccaaatgg 9616054  T
Q  405 aaaatacctattaattaaaacaagagataaatattattcagtaacctgaagagaccaaatataga 469  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||| |||||    
T  9616055 aaaatacctat-aattaaaacaggagataaatattattcaataacttgaagagaccaaaaataga 9616118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 478 - 589
Target Start/End: Original strand, 9640540 - 9640649
Alignment:
Q  478 aaagatgtaaaagttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagat 577  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||    
T  9640540 aaagatgtaaa--ttaccctgtagggagtttatatccaatccatccagttttgaatcccaaataaccaccagctacgatgataaacatcaaagcacatat 9640637  T
Q  578 attcactgatgt 589  Q
    ||||||||||||    
T  9640638 attcactgatgt 9640649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 298 - 440
Target Start/End: Original strand, 9640360 - 9640501
Alignment:
Q  298 attatcatgatctatacctcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccc 397  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||       || ||||||||||||||||||||||||||||| |    
T  9640360 attatcatgatctatacctcttcagcagcgctggcaactgcatcaaaacctatgtatgcaaaaaaagctgttgcagaaccagcaaccattccatctactc 9640459  T
Q  398 caaaaggaaaatacctattaattaaaacaagagataaatatta 440  Q
    |||| | |||||||||||| |||||||||||| | ||||||||    
T  9640460 caaatgcaaaatacctatt-attaaaacaagatacaaatatta 9640501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 491 - 590
Target Start/End: Original strand, 9616157 - 9616256
Alignment:
Q  491 ttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattcactgatgtc 590  Q
    ||||||| | || |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| |||||||    
T  9616157 ttaccctttaggaagttcatatccaatccatccagttttgaatcccaaataaccaccagctactatgacaaacatcaaagcacatatattcattgatgtc 9616256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 308 - 424
Target Start/End: Complemental strand, 33643349 - 33643233
Alignment:
Q  308 tctatacctcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaaggaaa 407  Q
    ||||||||||||| |||||||||||||| ||||||||||| |  |||||        | || ||||||||||||| ||| ||||| || ||||| |||||    
T  33643349 tctatacctcttcagcagtgctggcaactgcatcaaaacctacatatgcaaaaaagactgtcgcagaaccagcaagcatcccatcaactccaaagggaaa 33643250  T
Q  408 atacctattaattaaaa 424  Q
    ||| |||||||| ||||    
T  33643249 atatctattaatgaaaa 33643233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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