View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7929_low_4 (Length: 537)

Name: NF7929_low_4
Description: NF7929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7929_low_4
NF7929_low_4
[»] chr7 (11 HSPs)
chr7 (9-520)||(33998244-33998751)
chr7 (13-187)||(30218940-30219114)
chr7 (104-190)||(30218746-30218832)
chr7 (104-188)||(2145924-2146008)
chr7 (13-76)||(33004957-33005020)
chr7 (108-199)||(25245000-25245091)
chr7 (104-194)||(18503560-18503650)
chr7 (10-76)||(38873647-38873713)
chr7 (30-65)||(39187560-39187595)
chr7 (108-186)||(15998799-15998877)
chr7 (21-94)||(25245367-25245440)
[»] chr5 (15 HSPs)
chr5 (24-186)||(26032249-26032411)
chr5 (14-187)||(38445881-38446054)
chr5 (13-192)||(18257958-18258136)
chr5 (14-91)||(15304435-15304512)
chr5 (14-74)||(21034813-21034873)
chr5 (104-187)||(36060741-36060824)
chr5 (127-186)||(12542110-12542169)
chr5 (108-187)||(32892431-32892510)
chr5 (104-187)||(40972124-40972207)
chr5 (21-75)||(38142487-38142541)
chr5 (123-186)||(2301832-2301895)
chr5 (106-185)||(7630624-7630703)
chr5 (24-75)||(41863568-41863619)
chr5 (108-153)||(17436473-17436518)
chr5 (21-65)||(30641732-30641776)
[»] chr4 (18 HSPs)
chr4 (12-194)||(52131901-52132081)
chr4 (10-185)||(11692153-11692321)
chr4 (9-189)||(4120039-4120218)
chr4 (104-187)||(51203221-51203304)
chr4 (21-186)||(5521420-5521590)
chr4 (105-162)||(33414298-33414355)
chr4 (106-187)||(41609326-41609406)
chr4 (129-194)||(2478928-2478993)
chr4 (13-94)||(31792768-31792849)
chr4 (136-188)||(5505172-5505224)
chr4 (127-182)||(3460866-3460921)
chr4 (104-186)||(17947038-17947120)
chr4 (127-189)||(38851972-38852034)
chr4 (21-71)||(48798538-48798588)
chr4 (103-180)||(24789658-24789735)
chr4 (103-180)||(24818524-24818601)
chr4 (21-65)||(41609237-41609281)
chr4 (21-65)||(44340794-44340838)
[»] chr2 (16 HSPs)
chr2 (19-197)||(35665317-35665495)
chr2 (18-187)||(7876160-7876329)
chr2 (13-182)||(654151-654320)
chr2 (104-184)||(7693570-7693650)
chr2 (14-185)||(28191442-28191620)
chr2 (21-187)||(24895654-24895820)
chr2 (112-187)||(17642612-17642687)
chr2 (14-181)||(27002659-27002824)
chr2 (14-76)||(12496774-12496836)
chr2 (20-153)||(1944091-1944224)
chr2 (129-200)||(7876469-7876540)
chr2 (26-187)||(578397-578548)
chr2 (104-185)||(12496859-12496939)
chr2 (22-65)||(42479995-42480038)
chr2 (104-187)||(43281565-43281647)
chr2 (143-187)||(12926507-12926551)
[»] chr3 (11 HSPs)
chr3 (13-187)||(54394308-54394482)
chr3 (13-187)||(16024522-16024695)
chr3 (13-187)||(31989804-31989977)
chr3 (104-187)||(54141377-54141460)
chr3 (104-187)||(16024809-16024892)
chr3 (104-167)||(25695049-25695112)
chr3 (104-187)||(33309950-33310033)
chr3 (104-185)||(1741971-1742052)
chr3 (104-153)||(33309685-33309734)
chr3 (21-70)||(39300639-39300688)
chr3 (143-187)||(38932687-38932731)
[»] chr8 (11 HSPs)
chr8 (9-190)||(22210143-22210324)
chr8 (9-187)||(23757484-23757665)
chr8 (18-187)||(33758035-33758204)
chr8 (13-68)||(13515469-13515524)
chr8 (13-68)||(13605002-13605057)
chr8 (13-165)||(158877-159030)
chr8 (17-193)||(15249500-15249676)
chr8 (104-183)||(23757291-23757370)
chr8 (129-187)||(33657598-33657656)
chr8 (38-94)||(194518-194574)
chr8 (38-94)||(309355-309411)
[»] chr1 (12 HSPs)
chr1 (13-192)||(14397985-14398163)
chr1 (13-183)||(33261889-33262056)
chr1 (13-183)||(33282048-33282215)
chr1 (13-186)||(1691454-1691626)
chr1 (10-187)||(27086158-27086336)
chr1 (109-165)||(2058832-2058888)
chr1 (127-186)||(362675-362734)
chr1 (148-186)||(23176369-23176407)
chr1 (106-187)||(33261691-33261771)
chr1 (106-187)||(33281850-33281930)
chr1 (105-153)||(4860045-4860093)
chr1 (107-187)||(7435383-7435462)
[»] chr6 (10 HSPs)
chr6 (14-193)||(34707551-34707728)
chr6 (112-190)||(4096480-4096558)
chr6 (110-187)||(31836882-31836958)
chr6 (112-192)||(12754020-12754100)
chr6 (14-74)||(26386302-26386362)
chr6 (14-54)||(31836804-31836844)
chr6 (13-55)||(1111865-1111907)
chr6 (123-185)||(4096791-4096853)
chr6 (106-183)||(1112024-1112101)
chr6 (21-93)||(3014369-3014441)
[»] scaffold0275 (1 HSPs)
scaffold0275 (21-71)||(9084-9134)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Complemental strand, 33998751 - 33998244
Alignment:
Q  9 catagatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgagg 108  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||    
T  33998751 catagatacaatttgaacataaaaaagttataatcttgacattcatatgaacataaagtgaccattaagtactaaaaacaaaataactttttttatgagg 33998652  T
Q  109 atgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatatttaatgttcaaggaa 208  Q
    |||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  33998651 atgaaaacattcagtttaattttttcaggattagaatcaaaattctctatatttataatgacgaaaaacttatttaatcctatatttaatgttcaaggaa 33998552  T
Q  209 gaggaatgcatattttaccataaaacgagaagaaagtgtaattcaaacttctataaaacnnnnnnnnngagtgtaatttacccttttttatgaagtagtc 308  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||           |||||||||||||||||||||||||||||||    
T  33998551 gaagaatgcatattttaccataaaacgagaagaaagtgtaatttaaacttctataaaataaaaaaaaaaagtgtaatttacccttttttatgaagtagtc 33998452  T
Q  309 taataataagaaattcattcattaagataaataagtgagaaatattaaattcgaattccgaccacttggcatattttttgatagaatagtatc-ttatat 407  Q
    |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  33998451 taatgatcaaaaattcattcattaagataaataagtgagaaatattaaattcgaattccaaccacttggcatattttttgatagaatagtatctttatat 33998352  T
Q  408 tgatcatgcacaccaattaattgtaactaatatttatttcatcacaagtgctccnnnnnnnnnnnnngtggtgatccatgggaagatatttacttcactc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||    
T  33998351 tgatcatgcacaccaattaattgtaactaatatttatttcatcacaagtgctcc-----ttttttttgtggtgatccatgggaagatatttacttcactc 33998257  T
Q  508 ttaagcccgtaat 520  Q
    |||||||||||||    
T  33998256 ttaagcccgtaat 33998244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 30218940 - 30219114
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatga 112  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| ||||| || |||||||  || |||||||||||||        ||||||||||    
T  30218940 gatacaatttgaacataaaagagttataattttgacatttatatgaaaataaaatggccattaaggacgaaaaacaaaataaaaaaatttatgaggatga 30219039  T
Q  113 aaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||| ||||| |||| |||||| || ||||||||||| |||||||||||| ||||||||||||||||||||    
T  30219040 aaacattcagtttagttttgtagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaacc 30219114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 30218832 - 30218746
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacctta 190  Q
    ||||||||||||||||| |||||||||| |||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  30218832 tgaggatgaaaacattcagtttaattttataggaattaaaatcaaaattcgttatatttatatggacgaaaaacttatttaacctta 30218746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 2146008 - 2145924
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacct 188  Q
    ||||||| |||||||||  |||||||||||| |||||| ||| ||||||| |||||||||||| |||||||||||||||||||||    
T  2146008 tgaggataaaaacattcaatttaattttttaaggattaaaataaaaattcgctatatttataaagacgaaaaacttatttaacct 2145924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 33005020 - 33004957
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaa 76  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||    
T  33005020 gatacaatttgaacataaaatagttacaattttgacattcacatgaaaataaagtggccattaa 33004957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 25245091 - 25245000
Alignment:
Q  108 gatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatatttaatg 199  Q
    ||||||||||||   ||| || |||||||||| | ||||||||||| |||| ||||||  || ||||||||||||||||||||||| |||||    
T  25245091 gatgaaaacatttcattttatattttagggatcaaaatcaaaattcgctatttttatagggatgaaaaacttatttaaccttatatataatg 25245000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 18503650 - 18503560
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatatt 194  Q
    |||||||||||||||    ||| ||||||||||||| | ||||||||||   ||||||||||| ||||||||||||| |||| | ||||||    
T  18503650 tgaggatgaaaacatctcattttattttttagggataaaaatcaaaatttgatatatttataaggacgaaaaacttagttaaacctatatt 18503560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 38873713 - 38873647
Alignment:
Q  10 atagatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaa 76  Q
    |||||||||||| ||||||| |||| ||||||| || ||||||| || |||||||| ||||||||||    
T  38873713 atagatacaattcgaacatataaaaattataatcttcacattcacataaacataaaatgaccattaa 38873647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 39187595 - 39187560
Alignment:
Q  30 aaaaagttataattttgacattcatatgaacataaa 65  Q
    |||||||||||||||||||||| |||||||||||||    
T  39187595 aaaaagttataattttgacatttatatgaacataaa 39187560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 15998877 - 15998799
Alignment:
Q  108 gatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaac 186  Q
    |||||||||||   |||| |||||||||||| || ||||||||||  |||||||| ||  ||||||||| |||||||||    
T  15998877 gatgaaaacatcacgttttattttttagggactaaaatcaaaatttactatatttttagagacgaaaaaattatttaac 15998799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 25245367 - 25245440
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataa 94  Q
    |||| ||||||| ||||||||| |||||||| |||||||||||||  | |||||||  || ||||| |||||||    
T  25245367 ttgatcataaaagagttataatcttgacatttatatgaacataaataggccattaaggacaaaaaataaaataa 25245440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 26032411 - 26032249
Alignment:
Q  24 aacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaaaacattcggt 123  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||  ||| ||  || |||||||||||||         ||||||||||||||||| ||    
T  26032411 aacataaaagagttataatcttgacattcacatgaacataaagtggtcatcaaggaccaaaaacaaaataaaaaattttgtgaggatgaaaacattcagt 26032312  T
Q  124 ttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaac 186  Q
    |||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||    
T  26032311 ttaattttttagggattaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 26032249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 38445881 - 38446054
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaa 113  Q
    ||||||||||||||||||| | ||||||| |||||||||| |||||||||||||| |||||||  || |||| ||||||||         ||||| ||||    
T  38445881 atacaatttgaacataaaagatttataatcttgacattcacatgaacataaagtggccattaaggaccaaaagcaaaataaattattttgtgaggttgaa 38445980  T
Q  114 aacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||| ||||||||||||||||| || ||||||||||| || ||||||||  || |||||||||||||||||    
T  38445981 aacattcagtttaattttttagggactaaaatcaaaattcgctgtatttatagggatgaaaaacttatttaacc 38446054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 18257958 - 18258136
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatga 112  Q
    ||||||||||||||||||||  |||||||| |||||||||| ||||||||||| || | || ||  || |||||||||||||        ||||||||||    
T  18257958 gatacaatttgaacataaaatggttataatcttgacattcacatgaacataaaatggctatcaaggaccaaaaacaaaataa-tttttttatgaggatga 18258056  T
Q  113 aaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttata 192  Q
    |||||||| ||||||||||||||||| || ||| |||  || | |||||| |   || ||||||||||||||||| ||||    
T  18258057 aaacattcagtttaattttttagggactaaaataaaagatcaccatatttttggggaggaaaaacttatttaaccctata 18258136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 15304512 - 15304435
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaa 91  Q
    |||||||||||||||| || ||||||||| |||| ||||| |||||||||||||| |||||||  || ||||||||||    
T  15304512 atacaatttgaacatataagagttataatcttgatattcacatgaacataaagtggccattaaggaccaaaaacaaaa 15304435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 21034813 - 21034873
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccatt 74  Q
    ||||||||| ||||||||| ||||||||| |||||||||| |||||||||||||| |||||    
T  21034813 atacaatttaaacataaaagagttataatcttgacattcacatgaacataaagtggccatt 21034873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 36060741 - 36060824
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||| ||| |||||  ||||||||||||||||| || ||||||||||| |||||||| ||   |||||||||||||||||||    
T  36060741 tgaggacgaagacattttgtttaattttttagggactaaaatcaaaattcactatatttttagaaacgaaaaacttatttaacc 36060824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 12542169 - 12542110
Alignment:
Q  127 attttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaac 186  Q
    ||||||||||||||| |||||||||||  ||||||||||  ||| |||||||||||||||    
T  12542169 attttttagggattaaaatcaaaattcattatatttatagagacaaaaaacttatttaac 12542110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 32892431 - 32892510
Alignment:
Q  108 gatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||||  ||| ||||| ||| || || ||||||||||| |||||| ||||| || |||||||||||||||||    
T  32892431 gatgaaaacattcaattttattttatagagactaaaatcaaaattcgctatatctataaagaagaaaaacttatttaacc 32892510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 40972124 - 40972207
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||| |||||||||  ||| |||||||||||| || |||||||||||  ||||||||||  || |||||| ||||||||||    
T  40972124 tgaggataaaaacattctattttattttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaacc 40972207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 38142487 - 38142541
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccatta 75  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||| || ||||||    
T  38142487 ttgaacataaaaaagttataatattgacattaatatgaaaataaaatggccatta 38142541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 2301895 - 2301832
Alignment:
Q  123 tttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaac 186  Q
    ||||| ||||||||||||| || |||||||| || ||||| ||  |||||||||||||||||||    
T  2301895 tttaactttttagggattaaaaccaaaattcgctgtatttttagagacgaaaaacttatttaac 2301832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 7630624 - 7630703
Alignment:
Q  106 aggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaa 185  Q
    |||||||||||||    ||| |||||||||||| || ||||||||||   ||||||||||  ||||||||||||||||||    
T  7630624 aggatgaaaacatctctttttattttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 41863619 - 41863568
Alignment:
Q  24 aacataaaaaagttataattttgacattcatatgaacataaagtgaccatta 75  Q
    ||||||||| ||| |||||||||||||||||||||||| ||| ||| |||||    
T  41863619 aacataaaagagtaataattttgacattcatatgaacaaaaattgatcatta 41863568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 17436518 - 17436473
Alignment:
Q  108 gatgaaaacattcggtttaattttttagggattagaatcaaaattc 153  Q
    ||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  17436518 gatgaaaacattcagttttattttttagagattaaaatcaaaattc 17436473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 30641776 - 30641732
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaa 65  Q
    |||||||||||| ||| ||||| |||||||| |||||||||||||    
T  30641776 ttgaacataaaagagtgataatcttgacattaatatgaacataaa 30641732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 52132081 - 52131901
Alignment:
Q  12 agatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatg 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  || |||||||||||||         ||||||||    
T  52132081 agatacaatttgaacataaaaaagttataattttgacattcacatgaacataaagtgactattaaggaccaaaaacaaaataaatttttg--tgaggatg 52131984  T
Q  112 aaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatatt 194  Q
    |||||||||  |||||||||||| ||| || |||||||||||  ||||||| ||  |||| | ||||||||||||| ||||||    
T  52131983 aaaacattcattttaattttttatggactaaaatcaaaattcgttatatttgtagggacggataacttatttaaccctatatt 52131901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 11692321 - 11692153
Alignment:
Q  10 atagatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgagga 109  Q
    |||||||||||||||||||||||  |||| ||| |||||| ||| |||||||||| |||  ||||||  || ||||||||||||          ||||||    
T  11692321 atagatacaatttgaacataaaagtgttacaatcttgacactcacatgaacataatgtggtcattaaggaccaaaaacaaaatattg-------tgagga 11692229  T
Q  110 tgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaa 185  Q
    ||||||||||  |||||||||||||| || || ||||||||||| |||||||||||  || |||||||||||||||    
T  11692228 tgaaaacattaagtttaattttttagagactaaaatcaaaattcgctatatttatagggatgaaaaacttatttaa 11692153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 4120039 - 4120218
Alignment:
Q  9 catagatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgagg 108  Q
    |||| |||||||||||||||  |||||||||||| |||||||| | |||||||||||||| |||||||  || ||||| |||||||         |||||    
T  4120039 cataaatacaatttgaacatggaaaagttataatcttgacatttacatgaacataaagtggccattaaagaccaaaaataaaataaatttttttgtgagg 4120138  T
Q  109 atgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacctt 189  Q
    |||||| |||||  ||||| |||||||| | || ||| |||||||  ||||||||| | ||| ||||||||||||||||||    
T  4120139 atgaaagcattcaatttaaatttttaggaactaaaataaaaattcgttatatttattaggac-aaaaacttatttaacctt 4120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 51203304 - 51203221
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||||||| |||||  ||| |||||||||||| || ||||||||||| | |||||||||  ||||||||||||||||||||    
T  51203304 tgaggatgaaagcattctattttattttttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaacc 51203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 5521420 - 5521590
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaata-annnnnnnnatgaggatgaaaacatt 119  Q
    |||| ||||||| ||||||||| ||| |||| ||||||||||||| | ||||||||  |  |||||||||||| |         ||||||||||||||||    
T  5521420 ttgaccataaaagagttataatcttggcatttatatgaacataaattaaccattaaggatcaaaaacaaaatataaaaaatttgtgaggatgaaaacatt 5521519  T
Q  120 cggttta----attttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaac 186  Q
    | || ||    |||||||| ||| || ||||||||||| |||||||||||  |||||||||||||||||||    
T  5521520 ctgtatattttattttttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 33414298 - 33414355
Alignment:
Q  105 gaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatattt 162  Q
    ||||||||||||| || |||| ||||||||||||||| ||||||||||| ||||||||    
T  33414298 gaggatgaaaacaatcagttttattttttagggattaaaatcaaaattcgctatattt 33414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 41609326 - 41609406
Alignment:
Q  106 aggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||||||  ||| |||| | |||||||| ||||||||||| ||||||| ||||  |||||||||||||||||||    
T  41609326 aggatgaaaacattcaattttatttat-agggattaaaatcaaaattcgctatattcataagaacgaaaaacttatttaacc 41609406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 2478993 - 2478928
Alignment:
Q  129 tttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatatt 194  Q
    |||||||||| || ||||||||||   ||||||||||  |||||||||||||||||||||| ||||    
T  2478993 tttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaaccttttatt 2478928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 31792768 - 31792849
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataa 94  Q
    |||| ||||||||||||||| ||||||||| |||||||||| || |||||||| ||  ||||||  ||  ||||||||||||    
T  31792768 gatataatttgaacataaaagagttataatcttgacattcacataaacataaactggtcattaaggaccgaaaacaaaataa 31792849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 5505224 - 5505172
Alignment:
Q  136 ggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacct 188  Q
    |||||| |||||||||||  ||||||||||| ||| |||||||||||||||||    
T  5505224 ggattaaaatcaaaattcgttatatttataaagaccaaaaacttatttaacct 5505172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 3460921 - 3460866
Alignment:
Q  127 attttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatt 182  Q
    ||||||||||||| | ||||||||||   |||||||||||||| ||||||||||||    
T  3460921 attttttagggatgaaaatcaaaatttgatatatttataatgatgaaaaacttatt 3460866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 17947120 - 17947038
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaac 186  Q
    |||| |||||||||||| ||||||  ||||||  | || |||||||||||  ||||||||||| ||| |||| ||||||||||    
T  17947120 tgagaatgaaaacattcagtttaaacttttagacagtataatcaaaattcgttatatttataaggacaaaaatcttatttaac 17947038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 38852034 - 38851972
Alignment:
Q  127 attttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacctt 189  Q
    |||||||| |||||| ||||||||||   ||||||| ||  ||||||||||||||||||||||    
T  38852034 attttttaaggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaacctt 38851972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 48798588 - 48798538
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaagtgacc 71  Q
    |||||||||||| ||| ||||| |||||||| ||||||||||||| |||||    
T  48798588 ttgaacataaaagagtgataatcttgacattaatatgaacataaattgacc 48798538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 24789735 - 24789658
Alignment:
Q  103 atgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaactta 180  Q
    |||||||||||||||  | |||| |||||||| ||| || ||||||| |||  ||||||| ||| |||||||||||||    
T  24789735 atgaggatgaaaacaccccgttttattttttaaggactaaaatcaaatttcgttatatttttaaggacgaaaaactta 24789658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 24818524 - 24818601
Alignment:
Q  103 atgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaactta 180  Q
    |||||||||||||||  | |||| |||||||| ||| || ||||||| |||  ||||||| ||| |||||||||||||    
T  24818524 atgaggatgaaaacaccccgttttattttttaaggactaaaatcaaatttcgttatatttttaaggacgaaaaactta 24818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 41609237 - 41609281
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaa 65  Q
    |||| ||||||| ||||||||| |||||||| |||||||||||||    
T  41609237 ttgatcataaaagagttataatcttgacatttatatgaacataaa 41609281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 44340838 - 44340794
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaa 65  Q
    |||||||||||||||||||||| ||||||||  |||||| |||||    
T  44340838 ttgaacataaaaaagttataatgttgacattattatgaagataaa 44340794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 35665495 - 35665317
Alignment:
Q  19 atttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaaaacat 118  Q
    ||||||||||||||  |||||||| |||||||||| |  |||||||||||  ||||||  || |||||||||||||         |||||||||||||||    
T  35665495 atttgaacataaaagtgttataatcttgacattcacaataacataaagtggtcattaaggacgaaaaacaaaataaaaaaatttgtgaggatgaaaacat 35665396  T
Q  119 tcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatatttaa 197  Q
    ||  |||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||    
T  35665395 tcactttaattttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccctataattaa 35665317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 7876329 - 7876160
Alignment:
Q  18 aatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaaaaca 117  Q
    ||||||||||||||| ||||||||| |||||||| |||| |||||||||||  |||| |  || |||||||||||||         ||||||||||||||    
T  7876329 aatttgaacataaaagagttataatattgacatttatattaacataaagtggtcatttaggacgaaaaacaaaataattttttttgtgaggatgaaaaca 7876230  T
Q  118 ttcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||| |||||||||||||||||||  |||||||||||  ||||||||||  ||  ||||||||||||||||    
T  7876229 ttcagtttaattttttagggatttaaatcaaaattcattatatttatagggaataaaaacttatttaacc 7876160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 654151 - 654320
Alignment:
Q  13 gatacaatttgaacataaaaaa-gttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatg 111  Q
    |||||||||||||||||||||  |||||||| |||||||||| |||||||||||||| | || ||  || |||||||||||||         ||||||||    
T  654151 gatacaatttgaacataaaaagtgttataatcttgacattcacatgaacataaagtggctatcaatgaccaaaaacaaaataattttattg-tgaggatg 654249  T
Q  112 aaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatt 182  Q
    ||||||| |||||||| |||||| |||||| ||| ||||||   ||||||||||   ||||||||||||||    
T  654250 aaaacatacggtttaactttttatggattaaaataaaaatttgttatatttataggaacgaaaaacttatt 654320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 7693650 - 7693570
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttattta 184  Q
    ||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||||||   ||||||||| ||||||    
T  7693650 tgaggatgaaaacattcagtttaatttttttgggactaaaatcaaaattctctatatttataggaacgaaaaacatattta 7693570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 28191620 - 28191442
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcatatgaacataaag-------tgaccattaactactaaaaacaaaataannnnnnnnatga 106  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||       |   ||||||  || ||||| |||||||         |||    
T  28191620 atacaatttgaacataaaataattataattttgacattcatatgaacataaaggggtcattattcattaaggaccaaaaataaaataaaaaaatttgtga 28191521  T
Q  107 ggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaa 185  Q
    |||||||||||||| |||||||||| || ||| || ||||||||||| |||||||||||  ||| ||||||||| ||||    
T  28191520 ggatgaaaacattcagtttaattttgtacggactaaaatcaaaattcgctatatttatagggacaaaaaacttaattaa 28191442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 24895654 - 24895820
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaaaacattc 120  Q
    |||| ||||||| ||||||||| |||||||| ||||||| ||||| || |||||||  || |||||||||||||          ||| ||||||||||||    
T  24895654 ttgatcataaaagagttataatcttgacatttatatgaatataaattggccattaaaaaccaaaaacaaaataaaaaattttgcgagaatgaaaacattc 24895753  T
Q  121 ggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
      ||| ||||| |||||| || ||||||||||   ||||||| ||| ||||||||||||||||||||    
T  24895754 aattttattttgtagggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaacc 24895820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 17642612 - 17642687
Alignment:
Q  112 aaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||||| ||||||||||||| ||| || ||||||||||| |||||||| ||  ||||||||||||||||||||    
T  17642612 aaaacattcagtttaattttttaaggactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaacc 17642687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 27002824 - 27002659
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaa 113  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| |||| | | |||||||  || |||||||||||||         ||||||| ||    
T  27002824 atacaatttgaacataaaagaattataattttgacattcatatgaatataatg-ggccattaaggaccaaaaacaaaataaaaaaattg-tgaggataaa 27002727  T
Q  114 aacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttat 181  Q
    || |||| ||||||| ||||| | | || ||| ||||||| || ||||||||| ||| ||||||||||    
T  27002726 aatattcagtttaatattttatgaactaaaattaaaattcactgtatttataaggactaaaaacttat 27002659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 12496774 - 12496836
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaa 76  Q
    |||||||||||||||||||  |||||||| |||||||||| |||||||||||||| |||||||    
T  12496774 atacaatttgaacataaaagtgttataatcttgacattcacatgaacataaagtgcccattaa 12496836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 1944091 - 1944224
Alignment:
Q  20 tttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaaaacatt 119  Q
    ||||||||||||| | | ||||||||||||||||||| |||||||| || ||||||   ||||||||||||||||         |||||||||||| ||     
T  1944091 tttgaacataaaagactcataattttgacattcatattaacataaattggccattagggactaaaaacaaaataaaaaaaattgtgaggatgaaaatatc 1944190  T
Q  120 cggtttaattttttagggattagaatcaaaattc 153  Q
      |||||||||||||| || || |||||||||||    
T  1944191 atgtttaattttttagagactaaaatcaaaattc 1944224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 7876469 - 7876540
Alignment:
Q  129 tttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatatttaatgt 200  Q
    ||||||||||||| |||||||||||  ||||||||||| ||||||||| |||||||||| ||| ||| ||||    
T  7876469 tttttagggattaaaatcaaaattcattatatttataaggacgaaaaatttatttaaccctattttttatgt 7876540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 578397 - 578548
Alignment:
Q  26 cataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaaaacattcggttt 125  Q
    ||||||| ||||||||| |||| ||||||||||||||||| ||  ||||||| || ||||| |||||           ||||||||| |||||||  |||    
T  578397 cataaaagagttataatcttgatattcatatgaacataaattggtcattaacgaccaaaaaaaaaat---------tgtgaggatgacaacattctattt 578487  T
Q  126 aattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
     |||||||||||| || ||||||||||| ||| |||||||  |||| |||||||||||||||    
T  578488 tattttttagggactaaaatcaaaattcactacatttatatggacg-aaaacttatttaacc 578548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 12496859 - 12496939
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaa 185  Q
    ||||||||||||||| |||||| |||||||||| | || |||||||||||  ||||||||||  || |||||| ||||||||    
T  12496859 tgaggatgaaaacat-cggtttgattttttaggaactaaaatcaaaattcgttatatttatagggatgaaaaatttatttaa 12496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 42480038 - 42479995
Alignment:
Q  22 tgaacataaaaaagttataattttgacattcatatgaacataaa 65  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||    
T  42480038 tgaacataaaatagttataatgttgacattaatatgaacataaa 42479995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 43281647 - 43281565
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||||||||||||  |||| |||||||||| |||  | ||||||| | |||||||| ||  ||||||||||||||||||||    
T  43281647 tgaggatgaaaacattatgttttattttttagg-attgaagtcaaaatccactatatttgtagggacgaaaaacttatttaacc 43281565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 12926551 - 12926507
Alignment:
Q  143 aatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||  |||||||||| ||| |||||||||||||||||    
T  12926551 aatcaaaattcaatatatttatagtgatgaaaaacttatttaacc 12926507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 54394482 - 54394308
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatga 112  Q
    ||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||  ||||||  || |||||||||| ||         |||  ||||    
T  54394482 gatactatttgagcataaaaaagttataattttgacgttcacatgaacataaagtggtcattaatgaccaaaaacaaaaaaaataaatttgtgaatatga 54394383  T
Q  113 aaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||||  |||||||||||||||| || |||||||||||| |||| ||||||  |||||||||||||||||||    
T  54394382 aaacattcaatttaattttttagggactaaaatcaaaattctttatagttataagaacgaaaaacttatttaacc 54394308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 16024695 - 16024522
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatga 112  Q
    ||||||||||||||||||||  ||||||||||||| ||||| |  ||  |||| ||||||||||  |||||||| ||||| |         ||| |||||    
T  16024695 gatacaatttgaacataaaagtgttataattttgagattcacaaaaaattaaaatgaccattaaggactaaaaataaaatcatttttttg-tgaagatga 16024597  T
Q  113 aaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||||||||   ||||||||||||||||||||    
T  16024596 aaacattcagtttaattttttagggattaaaatcaaaattcgctatatttattgagacgaaaaacttatttaacc 16024522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 31989977 - 31989804
Alignment:
Q  13 gatacaatttgaacataaaaaagttataatttt-gacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatg 111  Q
    |||| ||||||||||||||| || |||||| || || ||||| ||||| |||||||||| |||||  || |||||||||||           ||||||||    
T  31989977 gatataatttgaacataaaagagctataatcttcgatattcacatgaatataaagtgactattaaggaccaaaaacaaaat--gtttttttgtgaggatg 31989880  T
Q  112 aaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||| |||  |||||||||||||||| || ||| ||||||   ||||||||||  ||||||||||||||||||||    
T  31989879 aaaacgttcaatttaattttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaacc 31989804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 54141460 - 54141377
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||||||||  ||| |||||||| | | || ||||||||||| |||||||| ||  || |||||||||||||||||    
T  54141460 tgaggatgaaaacattcaattttattttttaagaactacaatcaaaattcgctatatttttatggaagaaaaacttatttaacc 54141377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 16024809 - 16024892
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||||||    ||| |||||||||||| || ||||||||||   ||||||||||  |||||| |||||||||||||    
T  16024809 tgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggacgaataacttatttaacc 16024892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 25695049 - 25695112
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataat 167  Q
    |||| |||||||||||  ||||||||||||||| | || ||||||||||| |||||||| ||||    
T  25695049 tgagaatgaaaacattttgtttaattttttaggcactaaaatcaaaattcgctatatttttaat 25695112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 33309950 - 33310033
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||||||||||  | |||| |||||||||||| || ||| ||||||| |||||| | ||  || |||||||||||||||||    
T  33309950 tgaggatgaaaacaccccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 33310033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 1742052 - 1741971
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaa 185  Q
    |||||||||||||||    ||| ||||||||||||||| ||||||||||   ||||||||||  || ||||| |||||||||    
T  1742052 tgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatatttatagggatgaaaatcttatttaa 1741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 33309734 - 33309685
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattc 153  Q
    ||||||||||||||| | |||| |||||||||||| || |||||||||||    
T  33309734 tgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattc 33309685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 39300688 - 39300639
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaagtgac 70  Q
    |||||||||||| ||| ||||| |||||||| ||||||||||||| ||||    
T  39300688 ttgaacataaaagagtgataatcttgacattaatatgaacataaattgac 39300639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 38932731 - 38932687
Alignment:
Q  143 aatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||||||| |||||||| | | ||||||||||||||||||||    
T  38932731 aatcaaaattcactatattttttaagacgaaaaacttatttaacc 38932687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 22210143 - 22210324
Alignment:
Q  9 catagatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgagg 108  Q
    ||||||||||  |||| |||||||  |||||||| |||||||||||||||||||||| ||| ||||||  |  |||||||||||||        ||||||    
T  22210143 catagatacatcttgatcataaaagtgttataatcttgacattcatatgaacataaattgatcattaaagatcaaaaacaaaataaaaaaatttatgagg 22210242  T
Q  109 atgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacctta 190  Q
    ||||||||||||  ||| |||| ||| ||| || |||||||||||  ||||||||||| || ||||||||||||||||||||    
T  22210243 atgaaaacattctattttatttgttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaacctta 22210324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 23757484 - 23757665
Alignment:
Q  9 catagatacaatttgaacataaaaaagttataattttgacattcatatg--aacataaagtgaccattaactactaaaaacaaaataannnnnnnnatga 106  Q
    ||||||||||  |||||||||||| |||||||||||||||||| ||||   |||||||| || |||||||  || |||||||||||||          ||    
T  23757484 catagatacatcttgaacataaaagagttataattttgacatttatatctaaacataaaatggccattaaggaccaaaaacaaaataattttttttgcga 23757583  T
Q  107 ggatgaaaacattcggtttaattttttagggattagaatcaaaattctctata-tttataatgacgaaaaacttatttaacc 187  Q
    | |||| ||||||| ||||||||||||| ||| || ||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  23757584 gtatgacaacattctgtttaattttttacggactaaaatcaaaattcactatattttatagggacgaaaaacttatttaacc 23757665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 33758035 - 33758204
Alignment:
Q  18 aatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaaaaca 117  Q
    |||||||| |||| | ||||||||| |||||||||| |||||||||||||| |||||||  ||||||| |||| |||         |||| |||||||||    
T  33758035 aatttgaatataatagagttataatcttgacattcacatgaacataaagtggccattaaggactaaaagcaaagtaaatttttttgtgagaatgaaaaca 33758134  T
Q  118 ttcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||  |||||| ||| || || || |||||||||||  ||||||||||  || |||||| ||||||||||    
T  33758135 ttcaatttaatatttaagagactaaaatcaaaattcattatatttatagagatgaaaaatttatttaacc 33758204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 13515524 - 13515469
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtg 68  Q
    ||||||||||||| |||| | ||||||||  |||||||||||||||||||||||||    
T  13515524 gatacaatttgaatataatagagttataaacttgacattcatatgaacataaagtg 13515469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 13605057 - 13605002
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtg 68  Q
    ||||||||||||| |||| | ||||||||  |||||||||||||||||||||||||    
T  13605057 gatacaatttgaatataatagagttataaacttgacattcatatgaacataaagtg 13605002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 158877 - 159030
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaacta-ctaaaaacaaaataannnnnnnnatgaggatg 111  Q
    |||||||||| ||||||||| ||||||||| |||| ||||| || |||||||||||  | ||||  | | |||||||||||||         || |||||    
T  158877 gatacaatttaaacataaaagagttataatcttgaaattcacattaacataaagtggtctttaaggacccaaaaacaaaataaatttttttgtgtggatg 158976  T
Q  112 aaaacattcggtttaattttttagggattagaatcaaaattctctatatttata 165  Q
    |||||||||  |||||||||| ||||| || ||| |||||||  ||||||||||    
T  158977 aaaacattcaatttaatttttaagggactaaaataaaaattcgttatatttata 159030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 15249500 - 15249676
Alignment:
Q  17 caatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaaaac 116  Q
    |||||| |||||| || |||| ||||||||||||| | ||||||||||| ||  ||||||  || |||||||||||||         |||||||||||||    
T  15249500 caattttaacatagaagagttgtaattttgacatttacatgaacataaaatggtcattaaggaccaaaaacaaaataaaaaattttgtgaggatgaaaac 15249599  T
Q  117 attcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatat 193  Q
    ||    ||| ||||||||| ||  | ||||||||||   ||| ||||||  || ||||| |||||||||||||||||    
T  15249600 atctcattttattttttagtgacgaaaatcaaaatttgatatgtttatagggatgaaaagcttatttaaccttatat 15249676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 23757370 - 23757291
Alignment:
Q  104 tgaggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttattt 183  Q
    |||||||||||||||    ||| ||||||||||||||| ||| ||||||  |||||||||||| || |||||||| ||||    
T  23757370 tgaggatgaaaacatctcattttattttttagggattaaaattaaaatttgctatatttataaagatgaaaaactgattt 23757291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 33657598 - 33657656
Alignment:
Q  129 tttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||| | || ||||||||||| |||||||| ||| ||||||||| ||||||||||    
T  33657598 tttttaggaactaaaatcaaaattcgctatatttttaaggacgaaaaatttatttaacc 33657656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 194518 - 194574
Alignment:
Q  38 ataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataa 94  Q
    |||||||| ||||||| ||||||||||| |||| |||||  || |||||||||||||    
T  194518 ataattttaacattcacatgaacataaaatgactattaagaaccaaaaacaaaataa 194574  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 309355 - 309411
Alignment:
Q  38 ataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataa 94  Q
    |||||||| ||||||| ||||||||||| |||| |||||  || |||||||||||||    
T  309355 ataattttaacattcacatgaacataaaatgactattaagaaccaaaaacaaaataa 309411  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 14398163 - 14397985
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatga 112  Q
    |||||||||||||||||||| | ||||||| | |||||||||||||||||||||||   |||||  ||||||| ||||||||         |||||||||    
T  14398163 gatacaatttgaacataaaagaattataatctcgacattcatatgaacataaagtggttattaaggactaaaatcaaaataaaaaatttg-tgaggatga 14398065  T
Q  113 aaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttata 192  Q
    |||||||| ||||||||||||||| | || ||||||||||   ||||||||||  || ||||||||||||||||| ||||    
T  14398064 aaacattcagtttaattttttaggaactaaaatcaaaattagttatatttatatggatgaaaaacttatttaaccctata 14397985  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 33261889 - 33262056
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatga 112  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||  || ||||||||  |           | |||||||    
T  33261889 gatacaatttgaacataaaaaagttataatttttacattcacatgaacataaagtggtcattaaggaccaaaaacaattt---ttttttttttaggatga 33261985  T
Q  113 aaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttattt 183  Q
    |||||||| ||||||||||||||||| || ||||||||||  |||||||||||   |||||||||||||||    
T  33261986 aaacattcagtttaattttttagggactaaaatcaaaattagctatatttataggaacgaaaaacttattt 33262056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 33282048 - 33282215
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatga 112  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||  || ||||||||  |           | |||||||    
T  33282048 gatacaatttgaacataaaaaagttataatttttacattcacatgaacataaagtggtcattaaggaccaaaaacaattt---ttttttttttaggatga 33282144  T
Q  113 aaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttattt 183  Q
    |||||||| ||||||||||||||||| || ||||||||||  |||||||||||   |||||||||||||||    
T  33282145 aaacattcagtttaattttttagggactaaaatcaaaattagctatatttataggaacgaaaaacttattt 33282215  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 1691454 - 1691626
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatga 112  Q
    ||||||||||||||| ||||  |||| |||||| ||||||| ||||||||||||||  ||||||  || ||||||||||| |         | |||||||    
T  1691454 gatacaatttgaacacaaaagtgttagaatttttacattcacatgaacataaagtggtcattaaggaccaaaaacaaaatcatttttttttt-aggatga 1691552  T
Q  113 aaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaac 186  Q
    |||||||| |||||||||||||| || || ||||||||||| |||||||||||  |||||||||| ||||||||    
T  1691553 aaacattcagtttaattttttagagactaaaatcaaaattcgctatatttatagggacgaaaaacctatttaac 1691626  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 27086158 - 27086336
Alignment:
Q  10 atagatacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnna-tgagg 108  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  | || ||||||||  ||||||  |  |||||||||||||          |||||    
T  27086158 atagatacaatttgaacataaaaatgttataatcttgacattcacgtaaaaataaagtggtcattaaggatcaaaaacaaaataaaaaaaatttgtgagg 27086257  T
Q  109 atgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||| ||||||||||||| ||| || ||||| ||||   ||||||||||| || |||||||||||||||||    
T  27086258 atgaaaacattcagtttaattttttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaacc 27086336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 2058832 - 2058888
Alignment:
Q  109 atgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttata 165  Q
    |||||||||||||||||||||||||| |||||| |||||||||||  ||||||||||    
T  2058832 atgaaaacattcggtttaattttttaaggattaaaatcaaaattcgttatatttata 2058888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 362734 - 362675
Alignment:
Q  127 attttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaac 186  Q
    ||||||||||||||| ||||||| ||   ||||||||||  |||||||||||||||||||    
T  362734 attttttagggattaaaatcaaattttaatatatttatagggacgaaaaacttatttaac 362675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 23176369 - 23176407
Alignment:
Q  148 aaattctctatatttataatgacgaaaaacttatttaac 186  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  23176369 aaattctctatatttataaggactaaaaacttatttaac 23176407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 33261771 - 33261691
Alignment:
Q  106 aggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||||    ||| |||||||||||| || ||||||||||   ||| ||||||| ||||||||||||||||||||    
T  33261771 aggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaacc 33261691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 33281930 - 33281850
Alignment:
Q  106 aggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||||    ||| |||||||||||| || ||||||||||   ||| ||||||| ||||||||||||||||||||    
T  33281930 aggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaacc 33281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 4860093 - 4860045
Alignment:
Q  105 gaggatgaaaacattcggtttaattttttagggattagaatcaaaattc 153  Q
    ||||| |||||||||  |||||||||||||| ||||| |||||||||||    
T  4860093 gaggacgaaaacattttgtttaattttttagagattaaaatcaaaattc 4860045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 7435462 - 7435383
Alignment:
Q  107 ggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    ||||||||||||   |||| ||||||||||||||| | || |||||| |||||||| ||| ||| ||||| ||||||||||    
T  7435462 ggatgaaaacatatcgttttattttttagggattaaagtc-aaattcactatatttttaaggacaaaaaatttatttaacc 7435383  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 34707728 - 34707551
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaataannnnnnnnatgaggatgaa 113  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| |||| | | |||||||  || |||||||||||||         ||| ||| ||    
T  34707728 atacaatttgaacataaaagaattataattttgacattcatatgaatataatg-ggccattaaggaccaaaaacaaaataaaaaaaatg-tgacgataaa 34707631  T
Q  114 aacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttatat 193  Q
    || ||||  |||||| |||||   | || ||| ||||||| |||||||||||| ||| |||||||||||||||| |||||    
T  34707630 aatattcaatttaatattttattaactaaaattaaaattcactatatttataaggactaaaaacttatttaaccatatat 34707551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 4096558 - 4096480
Alignment:
Q  112 aaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacctta 190  Q
    ||||||||||||||||||||||| | | || ||| |||||||  ||||||||||   || |||||||||||||||||||    
T  4096558 aaaacattcggtttaattttttaagaactaaaattaaaattcgttatatttataggaacaaaaaacttatttaacctta 4096480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 31836882 - 31836958
Alignment:
Q  110 tgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaacc 187  Q
    |||||||||||  |||||||||| ||||  || ||||||||||| ||||||||||||  ||| |||||||||||||||    
T  31836882 tgaaaacattcaatttaattttt-aggggctaaaatcaaaattcgctatatttataagaacgtaaaacttatttaacc 31836958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 12754100 - 12754020
Alignment:
Q  112 aaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaaccttata 192  Q
    |||||||||  ||||||||| |||  | || ||||||||||| ||| |||| ||| |||||||||||||||||||| ||||    
T  12754100 aaaacattctatttaattttatagaaactaaaatcaaaattcgctaaatttttaaggacgaaaaacttatttaaccctata 12754020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 26386362 - 26386302
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccatt 74  Q
    ||||||||| ||||||||| ||||||||  |||||||||| || || ||||||||||||||    
T  26386362 atacaatttaaacataaaagagttataaccttgacattcacataaatataaagtgaccatt 26386302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 31836804 - 31836844
Alignment:
Q  14 atacaatttgaacataaaaaagttataattttgacattcat 54  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  31836804 atacaatttgaacataaaaatgttataatcttgacattcat 31836844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 1111907 - 1111865
Alignment:
Q  13 gatacaatttgaacataaaaaagttataattttgacattcata 55  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||    
T  1111907 gatataatttgaacataaaagagttataatcttgacattcata 1111865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 4096791 - 4096853
Alignment:
Q  123 tttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttatttaa 185  Q
    ||||||||||||||||||| ||||||||||   | ||||||||  ||||||||| ||||||||    
T  4096791 tttaattttttagggattaaaatcaaaatttgatttatttatagggacgaaaaatttatttaa 4096853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 1112024 - 1112101
Alignment:
Q  106 aggatgaaaacattcggtttaattttttagggattagaatcaaaattctctatatttataatgacgaaaaacttattt 183  Q
    |||||||||||||    ||||||||||||||||||| ||| |||||    ||||||||||  ||||||||||||||||    
T  1112024 aggatgaaaacatctcatttaattttttagggattaaaattaaaatatgatatatttatagggacgaaaaacttattt 1112101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 3014441 - 3014369
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaagtgaccattaactactaaaaacaaaata 93  Q
    |||| ||||||| ||||||||| |||| ||| ||||||| ||||| || |||||||  || ||||||||||||    
T  3014441 ttgaccataaaagagttataatcttgatatttatatgaatataaattggccattaaggaccaaaaacaaaata 3014369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 9134 - 9084
Alignment:
Q  21 ttgaacataaaaaagttataattttgacattcatatgaacataaagtgacc 71  Q
    |||||||||||| ||| ||||| |||||||| ||||||||||||| |||||    
T  9134 ttgaacataaaagagtgataatcttgacattaatatgaacataaattgacc 9084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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