View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7929_low_5 (Length: 459)
Name: NF7929_low_5
Description: NF7929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7929_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 227 - 430
Target Start/End: Complemental strand, 8401562 - 8401360
Alignment:
| Q |
227 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
326 |
Q |
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| T |
8401562 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaaaaactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
8401464 |
T |
|
| Q |
327 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctctt |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8401463 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaataaatctccattttctctt |
8401364 |
T |
|
| Q |
427 |
tgtt |
430 |
Q |
| |
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|||| |
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| T |
8401363 |
tgtt |
8401360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 227 - 430
Target Start/End: Original strand, 8367848 - 8368050
Alignment:
| Q |
227 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
325 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || || | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8367848 |
atcacaattgaatcaaagaattgttaagttagatcaagaaaaaa-aactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
8367945 |
T |
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| Q |
326 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctct |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8367946 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttctct |
8368045 |
T |
|
| Q |
426 |
ttgtt |
430 |
Q |
| |
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||||| |
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| T |
8368046 |
ttgtt |
8368050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 227 - 430
Target Start/End: Complemental strand, 8423144 - 8422937
Alignment:
| Q |
227 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaa-taaatacaaatc--ttagaaaagtttgctagcaaattcatcaactgtagttccct |
322 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||| | ||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
8423144 |
atcataattgaatcaaagaattgttaagttagatcaagaaaaaagtaaactaaaaacaattagaaaagcttgcttgcaaattcatcaactatagttccct |
8423045 |
T |
|
| Q |
323 |
caacacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttc |
422 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8423044 |
caacacgagagtaagctgattttatagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttc |
8422945 |
T |
|
| Q |
423 |
tctttgtt |
430 |
Q |
| |
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|||||||| |
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|
| T |
8422944 |
tctttgtt |
8422937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 102 - 233
Target Start/End: Complemental strand, 8401716 - 8401585
Alignment:
| Q |
102 |
ggctagttggtcactaatctaagatacgaaaaattttacttattcaaaaggcgcacaaattttaataatattggttggtgattatttgaatttaattttt |
201 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
8401716 |
ggctagttggtgactaatctaagatacgaaaaatcttacttattcaaaaggcgcacaaaatttaataatattggtcggtgattatttgaatttaattttt |
8401617 |
T |
|
| Q |
202 |
ctacaatcacacaggcgcaaaaaatatcacaa |
233 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
8401616 |
ctacaatcacacaggcgcaaaaaatatcacaa |
8401585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 8401835 - 8401776
Alignment:
| Q |
19 |
aacaactagttgctgtctaaaatgtcaacaccaaggactaatgaatagttggtaattgat |
78 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401835 |
aacaactagttggtgtctaaaatgtcaacaccaaggactaatgaatagttggtaattgat |
8401776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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