View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7929_low_7 (Length: 435)
Name: NF7929_low_7
Description: NF7929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7929_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 6 - 409
Target Start/End: Original strand, 41122050 - 41122453
Alignment:
| Q |
6 |
gtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggatatgcgt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41122050 |
gtttggtgtttccaacatggtgaagatgctaaagaatattgatgatgaacatctaaaagatgaagcaatgaaatcaattatctttgagtcggatatgcgt |
41122149 |
T |
|
| Q |
106 |
gcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgttgatgagttagatcatgtaagaaatctactag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122150 |
gcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgttgatgagttagatcatgtaagaaatctactag |
41122249 |
T |
|
| Q |
206 |
cttattgtaaacaacataatctttcttctgcaccttctaatagttctcatttttcaaatactccaattggtgcaaatttgaatacaagttttatggattc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122250 |
cttattgtaaacaacataatctttcttctgcaccttctactagttctcatttttcaaatactccaattggtgcaaatttgaatacaagttttatggattc |
41122349 |
T |
|
| Q |
306 |
aacaaaggaagcacagctgaatggtgacaatggtggtgttgatccacagggaaaaccttaagtgagcaaattattctatgtttttctggccaattggtta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122350 |
aacaaaggaagcacagctgaatggtgacaatggtggtgttgatccacagggaaaaccttaagtgagcaaattattctatgtttttctggccaattggtta |
41122449 |
T |
|
| Q |
406 |
agat |
409 |
Q |
| |
|
|||| |
|
|
| T |
41122450 |
agat |
41122453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 325115 - 325009
Alignment:
| Q |
6 |
gtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggatatgcgt |
105 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||| || |||||||||||||| || |||||| |
|
|
| T |
325115 |
gtttggtatttccaacatggtgaagacgctaaagtctattgatgatgatcatcataaagatgaagcaatgaagtcgattatttttgagtcagaaatgcgt |
325016 |
T |
|
| Q |
106 |
gcaagat |
112 |
Q |
| |
|
||||||| |
|
|
| T |
325015 |
gcaagat |
325009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 3080694 - 3080569
Alignment:
| Q |
63 |
agatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgtta |
162 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | || ||||||| ||||| | ||||||||| ||||||||||||||||| | ||| ||| || |
|
|
| T |
3080694 |
agatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgata |
3080595 |
T |
|
| Q |
163 |
aagaagtctgttgatgagttagatca |
188 |
Q |
| |
|
|| |||||| | | ||||||||||| |
|
|
| T |
3080594 |
aataagtcttctaaagagttagatca |
3080569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 3094017 - 3093939
Alignment:
| Q |
63 |
agatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttatt |
141 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||| | ||||||| |
|
|
| T |
3094017 |
agatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
3093939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 3104350 - 3104488
Alignment:
| Q |
6 |
gtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggatatgcgt |
105 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||| |||| | || | || ||| || || |||||| | ||||||||||||||||||||||| ||| |
|
|
| T |
3104350 |
gtttggtgtttccaacatagtgaagttactaaagaatattaaagacaacgatgtaagagccgatgcaatggattcaattatttttgagtcggatattcgt |
3104449 |
T |
|
| Q |
106 |
gcaagattccctgctactggatgtctcggtgttattcat |
144 |
Q |
| |
|
||| |||||| | | ||||||| | |||||||||||| |
|
|
| T |
3104450 |
gcagaattccccgttcatggatgtgttggtgttattcat |
3104488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 36915163 - 36915318
Alignment:
| Q |
60 |
aaaagatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatg |
159 |
Q |
| |
|
|||||||| || |||| ||| || ||| ||||||||||||| ||||||| ||| || | | ||||||||| ||||||||| || ||||| ||| |
|
|
| T |
36915163 |
aaaagatgttgcgatgagatccataattattgagtcggatattcgtgcaaaatttcccgttcatggatgtcttggtgttattatggattatggaggtatg |
36915262 |
T |
|
| Q |
160 |
ttaaagaagtctgttgatgagttagatcatgtaagaaatctactagcttattgtaa |
215 |
Q |
| |
|
|||||| ||||| | || |||||||||||||||| || |||||||||||||||| |
|
|
| T |
36915263 |
ttaaagcagtctatggaagagttagatcatgtaaaaacgttactagcttattgtaa |
36915318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University