View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7929_low_8 (Length: 362)
Name: NF7929_low_8
Description: NF7929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7929_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 48 - 335
Target Start/End: Complemental strand, 42095160 - 42094873
Alignment:
| Q |
48 |
ttatgtccgtgtttatgccactcttattgaggtgttttgtgaggtggggtgtaatttgtggttagtgaaagtaaatgtgtgttttgtttttggatccggt |
147 |
Q |
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| T |
42095160 |
ttatgtccgtgtttatgccactcttattgaggtcttttgtgaggtggggtgtaatttgtggttagtgaaagtaaaggtgtgctttgtttttggatccggt |
42095061 |
T |
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| Q |
148 |
caacgactataaacaaaaatatagaattttattgagattaaattctcctattaaaatttaaatttttgttttactcttactttatatgatatgatgttgt |
247 |
Q |
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| T |
42095060 |
caacgactaaaaacaaaactatagaattttattgagattaaattctcctattaaaatttaaatttttgttttactgttactttatatgatatgatgttgt |
42094961 |
T |
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| Q |
248 |
ttttcgacatgcagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacaccaaa |
335 |
Q |
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| T |
42094960 |
ttttcgacatgcagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacaccaaa |
42094873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 39690815 - 39690725
Alignment:
| Q |
245 |
tgtttttcgacatgcagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacaccaaa |
335 |
Q |
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| T |
39690815 |
tgttttttggcatgcagttttcaagtacaacaacggatttgattcagtattggtggtaaacaaacacgattatgattcatgcaacatcaaa |
39690725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 39704416 - 39704496
Alignment:
| Q |
255 |
catgcagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacaccaaa |
335 |
Q |
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| T |
39704416 |
catgcagttttcaagtacaacaaaggatccgattcagtattggtggtaaacaaacacgattatgattcatgcaacatcaaa |
39704496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 35819892 - 35819801
Alignment:
| Q |
238 |
atgatgttgtttttcgacatgcagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaac |
329 |
Q |
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| T |
35819892 |
atgatgatgtgttttggcatgcagatttcaagtataacaaactagtcgattcactattgatggtaaacaaacaagcctatgattcatgcaac |
35819801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 39710993 - 39711068
Alignment:
| Q |
256 |
atgcagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacac |
331 |
Q |
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| T |
39710993 |
atgcaggtttcaagtataacaaaggatctgattctgtgttggtggtaaacaaccaaaactatgattcatgcgacac |
39711068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 257 - 334
Target Start/End: Complemental strand, 38711568 - 38711491
Alignment:
| Q |
257 |
tgcagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacaccaa |
334 |
Q |
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| T |
38711568 |
tgcagatttcaagtatcataaaggatccgattcagtgttggaagtaaacaaacaagattatgattcatgcaacaccaa |
38711491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 38720094 - 38720018
Alignment:
| Q |
259 |
cagatttcaagtataacaaagaaattgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacaccaaa |
335 |
Q |
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| T |
38720094 |
cagatttcaagtataataaaggatccgattcagtattggtggttaacaaacaagactttgattcatgcaacaccaaa |
38720018 |
T |
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