View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7929_low_9 (Length: 285)

Name: NF7929_low_9
Description: NF7929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7929_low_9
NF7929_low_9
[»] chr8 (20 HSPs)
chr8 (27-262)||(29911513-29911747)
chr8 (119-215)||(21145395-21145491)
chr8 (95-229)||(14523913-14524047)
chr8 (108-228)||(10708368-10708480)
chr8 (143-227)||(6393832-6393916)
chr8 (111-206)||(7603911-7604006)
chr8 (94-200)||(4586751-4586857)
chr8 (95-217)||(12125867-12125989)
chr8 (94-168)||(28802284-28802358)
chr8 (92-165)||(8981968-8982040)
chr8 (94-166)||(8982301-8982373)
chr8 (112-168)||(41302650-41302706)
chr8 (88-170)||(32062713-32062796)
chr8 (98-169)||(36469423-36469494)
chr8 (114-168)||(2987176-2987229)
chr8 (116-170)||(3662339-3662393)
chr8 (115-165)||(10029007-10029057)
chr8 (183-217)||(31711329-31711363)
chr8 (145-218)||(19793532-19793605)
chr8 (112-168)||(24017918-24017974)
[»] chr6 (12 HSPs)
chr6 (94-216)||(10219538-10219660)
chr6 (105-215)||(34937441-34937551)
chr6 (94-169)||(21021123-21021198)
chr6 (94-168)||(10067752-10067826)
chr6 (112-229)||(33806669-33806786)
chr6 (95-168)||(9436771-9436844)
chr6 (145-216)||(25085068-25085139)
chr6 (94-168)||(19264753-19264826)
chr6 (94-168)||(26368927-26369001)
chr6 (150-215)||(9436537-9436602)
chr6 (180-225)||(11589969-11590014)
chr6 (116-168)||(4964319-4964371)
[»] chr2 (21 HSPs)
chr2 (94-239)||(6788446-6788591)
chr2 (89-168)||(43503033-43503112)
chr2 (88-202)||(34549229-34549339)
chr2 (101-168)||(7165777-7165844)
chr2 (92-168)||(1517539-1517615)
chr2 (93-168)||(18902940-18903015)
chr2 (116-169)||(18903199-18903252)
chr2 (92-215)||(23359342-23359466)
chr2 (146-218)||(29926869-29926941)
chr2 (98-169)||(6923875-6923946)
chr2 (114-169)||(35150369-35150424)
chr2 (183-217)||(4876989-4877023)
chr2 (94-216)||(20167575-20167697)
chr2 (119-168)||(17604255-17604304)
chr2 (143-204)||(34883948-34884009)
chr2 (94-139)||(39273411-39273456)
chr2 (112-165)||(40124283-40124336)
chr2 (125-201)||(21603675-21603751)
chr2 (88-136)||(29282802-29282849)
chr2 (137-169)||(29488701-29488733)
chr2 (132-168)||(33583378-33583414)
[»] chr4 (43 HSPs)
chr4 (94-165)||(55132571-55132642)
chr4 (94-216)||(40317747-40317869)
chr4 (94-216)||(40327821-40327943)
chr4 (111-216)||(13834345-13834450)
chr4 (94-218)||(42375214-42375338)
chr4 (94-229)||(17381285-17381420)
chr4 (94-168)||(17753259-17753334)
chr4 (94-228)||(12034383-12034517)
chr4 (112-166)||(20217486-20217540)
chr4 (94-216)||(32934123-32934245)
chr4 (113-218)||(4215149-4215253)
chr4 (111-168)||(40407668-40407725)
chr4 (94-215)||(51234447-51234568)
chr4 (88-168)||(9297347-9297426)
chr4 (94-218)||(11358450-11358573)
chr4 (94-202)||(12922430-12922538)
chr4 (124-216)||(29223396-29223488)
chr4 (88-168)||(35763053-35763133)
chr4 (94-198)||(46805754-46805858)
chr4 (94-201)||(11839769-11839876)
chr4 (114-168)||(4161643-4161697)
chr4 (111-168)||(971863-971920)
chr4 (112-201)||(1758318-1758407)
chr4 (94-215)||(11840018-11840139)
chr4 (89-166)||(12163038-12163114)
chr4 (143-216)||(38080919-38080992)
chr4 (143-216)||(51150890-51150963)
chr4 (180-216)||(5979420-5979456)
chr4 (112-204)||(46804774-46804866)
chr4 (94-169)||(48648165-48648240)
chr4 (111-169)||(12922184-12922242)
chr4 (118-168)||(35255494-35255544)
chr4 (94-163)||(6364962-6365031)
chr4 (111-168)||(13834540-13834597)
chr4 (117-198)||(29223139-29223220)
chr4 (118-215)||(35075646-35075743)
chr4 (112-168)||(51151051-51151108)
chr4 (112-168)||(2161994-2162049)
chr4 (180-216)||(8755947-8755983)
chr4 (125-201)||(14810440-14810516)
chr4 (111-164)||(28137619-28137674)
chr4 (143-171)||(46216991-46217019)
chr4 (143-171)||(50384637-50384665)
[»] chr1 (29 HSPs)
chr1 (95-226)||(6727969-6728100)
chr1 (89-168)||(40967348-40967427)
chr1 (145-216)||(45679721-45679792)
chr1 (110-169)||(50155528-50155586)
chr1 (110-200)||(2998896-2998986)
chr1 (112-204)||(33747288-33747380)
chr1 (111-215)||(35684873-35684977)
chr1 (94-169)||(3602862-3602937)
chr1 (93-168)||(9553115-9553190)
chr1 (94-201)||(34177278-34177385)
chr1 (132-207)||(46500787-46500862)
chr1 (110-201)||(50155773-50155864)
chr1 (145-215)||(6450059-6450129)
chr1 (94-168)||(6541007-6541081)
chr1 (110-168)||(30050317-30050375)
chr1 (94-168)||(35621592-35621666)
chr1 (111-168)||(10018721-10018778)
chr1 (112-169)||(16192274-16192331)
chr1 (128-169)||(28620440-28620481)
chr1 (94-159)||(32670020-32670085)
chr1 (94-215)||(34177469-34177590)
chr1 (108-169)||(45679519-45679580)
chr1 (112-196)||(8068975-8069058)
chr1 (112-204)||(39330195-39330287)
chr1 (112-168)||(50804285-50804341)
chr1 (114-165)||(19464236-19464287)
chr1 (94-168)||(27900934-27901008)
chr1 (149-229)||(6541241-6541321)
chr1 (118-170)||(8987463-8987515)
[»] chr5 (17 HSPs)
chr5 (94-202)||(6217640-6217748)
chr5 (94-218)||(37853434-37853557)
chr5 (94-168)||(1276772-1276846)
chr5 (92-169)||(8407226-8407303)
chr5 (145-229)||(16750259-16750343)
chr5 (94-170)||(42420557-42420633)
chr5 (95-218)||(7756653-7756776)
chr5 (92-165)||(4400639-4400711)
chr5 (188-219)||(19342347-19342378)
chr5 (114-169)||(42932806-42932861)
chr5 (94-168)||(16127051-16127125)
chr5 (94-227)||(7314130-7314263)
chr5 (95-164)||(14121774-14121843)
chr5 (113-170)||(18970262-18970319)
chr5 (131-164)||(30118492-30118525)
chr5 (89-166)||(32503234-32503311)
chr5 (112-168)||(27001417-27001473)
[»] chr3 (25 HSPs)
chr3 (94-158)||(51889758-51889822)
chr3 (94-216)||(621842-621962)
chr3 (114-215)||(22235208-22235309)
chr3 (94-171)||(24255221-24255298)
chr3 (94-168)||(284321-284395)
chr3 (94-200)||(14984408-14984513)
chr3 (94-168)||(46848401-46848475)
chr3 (94-204)||(53705947-53706057)
chr3 (94-139)||(23567359-23567404)
chr3 (118-166)||(23195755-23195803)
chr3 (80-164)||(26500020-26500104)
chr3 (112-168)||(47199726-47199782)
chr3 (145-216)||(3941794-3941865)
chr3 (94-168)||(14194954-14195027)
chr3 (115-169)||(26483059-26483113)
chr3 (180-218)||(38989872-38989910)
chr3 (186-227)||(7672487-7672528)
chr3 (89-158)||(30669633-30669702)
chr3 (94-163)||(36080823-36080892)
chr3 (114-159)||(37326612-37326657)
chr3 (112-168)||(1324509-1324565)
chr3 (112-172)||(25321715-25321775)
chr3 (100-140)||(28961895-28961935)
chr3 (94-158)||(30669358-30669422)
chr3 (94-202)||(34294102-34294210)
[»] chr7 (23 HSPs)
chr7 (112-218)||(1052399-1052505)
chr7 (94-216)||(34703630-34703751)
chr7 (112-198)||(39608582-39608668)
chr7 (93-210)||(11458870-11458987)
chr7 (113-166)||(29196773-29196826)
chr7 (94-168)||(5358208-5358282)
chr7 (112-168)||(8062901-8062957)
chr7 (94-156)||(23190966-23191028)
chr7 (126-200)||(23474540-23474614)
chr7 (111-168)||(1247516-1247573)
chr7 (94-216)||(18942738-18942861)
chr7 (112-169)||(25618187-25618244)
chr7 (111-168)||(38838677-38838734)
chr7 (112-168)||(5362467-5362523)
chr7 (110-170)||(5429526-5429586)
chr7 (94-166)||(19303592-19303663)
chr7 (126-214)||(23441486-23441574)
chr7 (88-139)||(11459071-11459122)
chr7 (111-166)||(20889451-20889506)
chr7 (94-168)||(6983276-6983350)
chr7 (108-166)||(37502182-37502240)
chr7 (94-139)||(21401752-21401797)
chr7 (114-166)||(49078218-49078270)
[»] scaffold0329 (1 HSPs)
scaffold0329 (89-215)||(6192-6318)
[»] scaffold0053 (1 HSPs)
scaffold0053 (91-168)||(14738-14815)
[»] scaffold0687 (1 HSPs)
scaffold0687 (111-206)||(1595-1690)
[»] scaffold0050 (1 HSPs)
scaffold0050 (94-201)||(81296-81403)
[»] scaffold0041 (1 HSPs)
scaffold0041 (145-218)||(37363-37436)
[»] scaffold0022 (1 HSPs)
scaffold0022 (186-218)||(82918-82950)
[»] scaffold0005 (1 HSPs)
scaffold0005 (125-201)||(29212-29288)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 29911747 - 29911513
Alignment:
Q  27 gtttggtgtttatgcacacttttttcagattnnnnnnntaattaaatgtaaggtgatttgtagggtaaatagtcattttcatctctgaatgtgtaacgag 126  Q
    ||||| ||||||||||||||||||| |||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29911747 gtttgttgtttatgcacactttttt-agattaaaaaaataattaaatgtaaggtgatttgtaggataaatagtcattttcatctctgaatgtgtaacgag 29911649  T
Q  127 tagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaatagttcttcaat 226  Q
    | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  29911648 tggccacaatagttgtttaatgtatcaaaattttaaaatagttcataagtgtccacttcgttagtcaaaatagtctctaacgttaaaataattcctcaat 29911549  T
Q  227 actagcagtaacttgtttcctgttgggattgatata 262  Q
    |||||||||||||||||||||||||||||| |||||    
T  29911548 actagcagtaacttgtttcctgttgggattaatata 29911513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 21145395 - 21145491
Alignment:
Q  119 gtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaat 215  Q
    |||| |||||||||||| |||| |||||||| |  |||||| ||||||||||| || ||| ||||  ||||||||||||||||||| ||||||||||    
T  21145395 gtaatgagtagccacaacagttcttcaatgttttgaaatttcaaaatagttcataattgtgcactatgttagtcaaaatagtctcttacgttaaaat 21145491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 14524047 - 14523913
Alignment:
Q  95 atagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaa 194  Q
    |||| |||||| ||||||||||||||||| ||||| || ||||||   | ||||| || |||||| ||||||||||   | ||| ||||||||||||||     
T  14524047 atagacattttgatctctgaatgtgtaacaagtagtcataatagtcccttaatgtgtcgaaatttcaaaatagttcttgattgttcacttcgttagtcat 14523948  T
Q  195 aatagtctctaacgttaaaatagttcttcaatact 229  Q
    ||||||||||  ||| |||||| | ||||||||||    
T  14523947 aatagtctctggcgtcaaaataatccttcaatact 14523913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 10708368 - 10708480
Alignment:
Q  108 tctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaac 207  Q
    ||||| |||||||||| |||| ||||||||||  |||||||||| |||||| |||||||||         | ||| ||||||||||||||||||| | ||    
T  10708368 tctctaaatgtgtaacaagtaaccacaatagtctttcaatgtatgaaaattctaaaatagta--------tgcacctcgttagtcaaaatagtctttgac 10708459  T
Q  208 gttaaaatagttcttcaatac 228  Q
    |||||||||||| ||||||||    
T  10708460 gttaaaatagtttttcaatac 10708480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 6393832 - 6393916
Alignment:
Q  143 tcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaatagttcttcaata 227  Q
    |||||||||| |||||| |||||||||||  | ||| |||||  ||||||||||||||  ||||| |||||||||||||| ||||    
T  6393832 tcaatgtatcgaaatttcaaaatagttcatgattgtgcactttattagtcaaaatagttcctaacattaaaatagttctttaata 6393916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 7603911 - 7604006
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaa 206  Q
    |||||||| ||| |||||| |  ||||||  ||||||||||||||||||||||||| ||    | ||| ||||||||| |||||||||||||||||    
T  7603911 ctgaatgtataatgagtagtcggaatagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaa 7604006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 4586751 - 4586857
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||| ||||| |||  ||||||||||||||||||  ||||||||   | ||||||| ||||||||||||||||  |  | | | ||||||||||||||    
T  4586751 aatagttattttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagtctatgattttgcacttcgttagtca 4586850  T
Q  194 aaatagt 200  Q
    |||||||    
T  4586851 aaatagt 4586857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 12125989 - 12125867
Alignment:
Q  95 atagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaa 194  Q
    |||||||||||  ||||| | ||| |||| ||| | |||||||||| || ||||||| ||||||||||||||||| |  |  || ||||| |||||||||    
T  12125989 atagtcattttggtctcttattgtataacaagtggtcacaatagtttttaaatgtatgaaaattttaaaatagtttatgacggtgcactttgttagtcaa 12125890  T
Q  195 aatagtctctaacgttaaaatag 217  Q
    |||| ||  |||| |||||||||    
T  12125889 aataatcaataacattaaaatag 12125867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 28802284 - 28802358
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||||  || ||||||||||||| | ||| |||||||||   || |||||||||||||||||||||||    
T  28802284 aatagtcattttagtcgctgaatgtgtaacaaatagtcacaatagtccatcgatgtatcaaaattttaaaatagt 28802358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 8981968 - 8982040
Alignment:
Q  92 taaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaat 165  Q
    |||||||||||||| |||||||||| ||||||||||||  |||||||||  ||| |||||| ||||| ||||||    
T  8981968 taaatagtcattttgatctctgaatatgtaacgagtaggtacaatagtt-ctcagtgtatcgaaattctaaaat 8982040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 8982373 - 8982301
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||||||||  | ||||||||| ||| || ||| ||||||||||  || |||||||||||||||||||||    
T  8982373 aatagtcatttttgtttctgaatgtataatgattagtcacaatagtttctcgatgtatcaaaattttaaaata 8982301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 41302650 - 41302706
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||||  |||||||||  ||||| |||| ||||||||||||||||    
T  41302650 tgaatgtgtaacgagtaatcacaatagtctttcaaagtattaaaattttaaaatagt 41302706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 32062796 - 32062713
Alignment:
Q  88 agggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagt-tgttcaatgtatcaaaattttaaaatagttc 170  Q
    |||| |||| ||||||||| ||||||||| |||| || ||||||| |||| | | |||||||||| |||||| |||||||||||    
T  32062796 agggaaaatggtcattttcgtctctgaatatgtagcgggtagccataataatattttcaatgtataaaaattctaaaatagttc 32062713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 36469423 - 36469494
Alignment:
Q  98 gtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||||| |||||||||||| ||| || |||  |||||| ||  ||||| |||||||||||||||||||||    
T  36469423 gtcattttgatctctgaatgtataatgattagttacaataattcctcaatatatcaaaattttaaaatagtt 36469494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 2987229 - 2987176
Alignment:
Q  114 aatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||| ||||| ||| |||||||||| | |||||||||||||||||||||||||    
T  2987229 aatgtgaaacgattagtcacaatagttct-caatgtatcaaaattttaaaatagt 2987176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 3662339 - 3662393
Alignment:
Q  116 tgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttc 170  Q
    ||||||| ||||| ||| ||||||   ||||||||||||||||||||||||||||    
T  3662339 tgtgtaaggagtaaccataatagtccctcaatgtatcaaaattttaaaatagttc 3662393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 10029057 - 10029007
Alignment:
Q  115 atgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaat 165  Q
    ||||| |||||||||  ||||||||  ||||||||||||||||||||||||    
T  10029057 atgtgcaacgagtagttacaatagtcattcaatgtatcaaaattttaaaat 10029007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 31711329 - 31711363
Alignment:
Q  183 ttcgttagtcaaaatagtctctaacgttaaaatag 217  Q
    ||||||||||||||||||| |||||||||||||||    
T  31711329 ttcgttagtcaaaatagtcactaacgttaaaatag 31711363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 19793605 - 19793532
Alignment:
Q  145 aatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaatagt 218  Q
    ||||||||||||||||||||||||  | || ||| |  || ||||||||||  ||||||| |||||||||||||    
T  19793605 aatgtatcaaaattttaaaatagtgtataattgtacgatttgttagtcaaataagtctcttacgttaaaatagt 19793532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 24017918 - 24017974
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||||| || ||||||| || | |||||| |||||| ||||||||    
T  24017918 tgaatgtgtaacgagtagacataatagttttttagtgtatcgaaatttgaaaatagt 24017974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 10219538 - 10219660
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  || |||||||||||||||||||||||||||||   | ||||| || |||||| ||||||||||   | ||| ||||| ||||||||    
T  10219538 aatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagtca 10219637  T
Q  194 aaatagtctctaacgttaaaata 216  Q
    ||||||||||| |||||||||||    
T  10219638 aaatagtctctgacgttaaaata 10219660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 34937441 - 34937551
Alignment:
Q  105 tcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctct 204  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||||| |||||| |||||| |   | | ||| ||||  ||||||||||||| | |||    
T  34937441 tcatctttgaatgtgtaacgagtagtcacaatagttcttcaatgtatccaaatttcaaaatattatccgattgtgcactaagttagtcaaaataatatct 34937540  T
Q  205 aacgttaaaat 215  Q
     ||||||||||    
T  34937541 tacgttaaaat 34937551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 21021198 - 21021123
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||| ||||| |||||||||||||||| |||| | |||||| ||| || || ||||||||||||||||||||||    
T  21021198 aatagttattttgatctctgaatgtgtaatgagtggtcacaatcgttttttaaagtatcaaaattttaaaatagtt 21021123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 10067826 - 10067752
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||||  ||| |||||||||||| |||| ||||||||||   |||||||||| |||||||||||||||    
T  10067826 aatagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagt 10067752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 33806669 - 33806786
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgtta 211  Q
    ||||||||||| |||||| ||||||| |  || |||||||| ||||| |||||||||     | | |  |||| ||||||||||||||||||||||||||    
T  33806669 tgaatgtgtaaggagtagtcacaataatcctttaatgtatcgaaattctaaaatagtcattgattatgtactttgttagtcaaaatagtctctaacgtta 33806768  T
Q  212 aaatagttcttcaatact 229  Q
    ||||| | ||||||||||    
T  33806769 aaatattccttcaatact 33806786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 9436844 - 9436771
Alignment:
Q  95 atagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||  |||||||||  ||||||||||| |||||||||   |||||| ||| |||||||||||||||    
T  9436844 atagtcattttagtctctgaataggtaacgagtagtcacaatagtctctcaatggatcgaaattttaaaatagt 9436771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 25085139 - 25085068
Alignment:
Q  145 aatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaata 216  Q
    |||||||||||||||||||||| ||    | ||| ||||| ||||||||||||||||| |||| ||||||||    
T  25085139 aatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaaatagtctttaacattaaaata 25085068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 19264826 - 19264753
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||| | ||  |||||||||||||||||| |||||||| | |  |||||||| |||||||||||||||    
T  19264826 aatagtcatttacgtccttgaatgtgtaacgagtagtcacaatag-tctctaatgtatcgaaattttaaaatagt 19264753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 26368927 - 26369001
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| |||  | |||||| ||||||||||||| |||||  ||||||| |||||||||  ||||||||    
T  26368927 aatagtcattttgatccttaaatgtggaacgagtagccacgatagtccttcaatgcatcaaaattgcaaaatagt 26369001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 9436537 - 9436602
Alignment:
Q  150 atcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaat 215  Q
    |||||||||  ||||||||||  || ||| |||||||||||||||||| || ||| ||||||||||    
T  9436537 atcaaaattacaaaatagttcttaattgtgcacttcgttagtcaaaattgtttctgacgttaaaat 9436602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 11589969 - 11590014
Alignment:
Q  180 cacttcgttagtcaaaatagtctctaacgttaaaatagttcttcaa 225  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||    
T  11589969 cacttcgttagtcaaaatagtctttgatattaaaatagttcttcaa 11590014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 4964371 - 4964319
Alignment:
Q  116 tgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||  |||||||||| ||||  |||||||||| ||||||||||||||||    
T  4964371 tgtgtaattagtagccacactagtccttcaatgtattaaaattttaaaatagt 4964319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 6788591 - 6788446
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||||||  | |||||||||| | ||| || ||||||  ||||||||||||||||||||||||||||    | ||| ||||| ||||||||    
T  6788591 aatagtcattttcatccttaaatgtgtaacaaatagtcataatagtcattcaatgtatcaaaattttaaaatagtttctgattgtgcactttgttagtca 6788492  T
Q  194 aaatagtctctaacgttaaaatagttcttcaatactagcagtaact 239  Q
     |||||||||| | | ||||||| | ||||||||||  ||||||||    
T  6788491 gaatagtctctgatgctaaaataatccttcaatactcacagtaact 6788446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 43503112 - 43503033
Alignment:
Q  89 gggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||||  || || ||| ||||||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  43503112 gggtaaatagtcatttttttcccttaatatgtaacgagtagttacaatagtttttcaatgtattaaaattttaaaatagt 43503033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 34549229 - 34549339
Alignment:
Q  88 agggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgt 187  Q
    |||||||||||||||||| ||| || |||||||||| |||||| |||||||    || ||||||||||||| |||||||||  |  | |||  |||||||    
T  34549229 agggtaaatagtcattttgatcactaaatgtgtaacaagtagcaacaatag----tccatgtatcaaaattctaaaatagtctatgactgtgtacttcgt 34549324  T
Q  188 tagtcaaaatagtct 202  Q
    |||||||||||||||    
T  34549325 tagtcaaaatagtct 34549339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 7165844 - 7165777
Alignment:
Q  101 attttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||| ||| || |||||||||||||||| |||||||||  |||||||||| ||||||||||||||||    
T  7165844 attttgatccctaaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagt 7165777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 1517539 - 1517615
Alignment:
Q  92 taaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||| || |||| ||||||||||| |||  || |||||  ||||||||||| |||||||||||||||    
T  1517539 taaatagtcattttgatatctggatgtgtaacgaatagttacgatagtccttcaatgtatcgaaattttaaaatagt 1517615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 18902940 - 18903015
Alignment:
Q  93 aaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||| || |||||||||||| || ||||||| |||||  ||||||||| | ||||| |||||||||    
T  18902940 aaatagtcattttcgtccctgaatgtgtaatgattagccacgatagtctttcaatgtaccgaaattctaaaatagt 18903015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 18903252 - 18903199
Alignment:
Q  116 tgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||||||||||| |||||||||  ||||||||||| ||||| ||||||||||    
T  18903252 tgtgtaacgagtagtcacaatagtcattcaatgtatcgaaattctaaaatagtt 18903199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 23359342 - 23359466
Alignment:
Q  92 taaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaat-gtatcaaaattttaaaatagttcacaagtgtccacttcgttag 190  Q
    ||||||||||||||  || |  |||||||||||| ||| |||||||||  |||||| ||||  ||||| ||| |||||  |  | |||  ||| ||||||    
T  23359342 taaatagtcatttttgtcccgaaatgtgtaacgaatagtcacaatagtccttcaattgtattgaaattataatatagtctatgattgtgtactacgttag 23359441  T
Q  191 tcaaaatagtctctaacgttaaaat 215  Q
    |||||||||||||||||||||||||    
T  23359442 tcaaaatagtctctaacgttaaaat 23359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 29926941 - 29926869
Alignment:
Q  146 atgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaatagt 218  Q
    |||||||||||||||||||||||  |  | ||| || ||| |||||||||||||||| | |||||||||||||    
T  29926941 atgtatcaaaattttaaaatagtcaatgattgtgcatttcattagtcaaaatagtctttgacgttaaaatagt 29926869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 6923946 - 6923875
Alignment:
Q  98 gtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||||| |||||||||||| ||| || |||  |||||| ||  ||||| |||||||||||||||||||||    
T  6923946 gtcattttgatctctgaatgtataatgattagttacaataattcctcaatatatcaaaattttaaaatagtt 6923875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 35150369 - 35150424
Alignment:
Q  114 aatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||||||| |||||| ||||||||   |||||| ||||||||||||||||||||    
T  35150369 aatgtgtaacaagtagctacaatagtctctcaatgcatcaaaattttaaaatagtt 35150424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 4876989 - 4877023
Alignment:
Q  183 ttcgttagtcaaaatagtctctaacgttaaaatag 217  Q
    ||||||||||||||||||| |||||||||||||||    
T  4876989 ttcgttagtcaaaatagtcactaacgttaaaatag 4877023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 20167697 - 20167575
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  ||| | |||||||||| ||||| |||||||||   |||||| |||||||||  |||||| | |   | ||| ||||| ||||| ||    
T  20167697 aatagtcattttggtctttaaatgtgtaacaagtagtcacaatagtcactcaatgcatcaaaattgcaaaatattccctgattgtacactttgttagaca 20167598  T
Q  194 aaatagtctctaacgttaaaata 216  Q
    ||||||||||| || ||||||||    
T  20167597 aaatagtctctgacattaaaata 20167575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 17604255 - 17604304
Alignment:
Q  119 gtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||| ||||||||||  ||||| ||||||||||| ||||||||    
T  17604255 gtaacgagtagtcacaatagttactcaatttatcaaaatttcaaaatagt 17604304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 34883948 - 34884009
Alignment:
Q  143 tcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctct 204  Q
    ||||||||||||||||||||||||||    || ||| ||||  |||||||||||||||||||    
T  34883948 tcaatgtatcaaaattttaaaatagtctctaattgtgcactctgttagtcaaaatagtctct 34884009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 39273456 - 39273411
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagt 139  Q
    ||||| ||||||  ||||||||||||||| ||||||||||||||||    
T  39273456 aatagccattttggtctctgaatgtgtaatgagtagccacaatagt 39273411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 40124283 - 40124336
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaat 165  Q
    |||||||||||||||||| |||||||||   | |||||||| ||||||||||||    
T  40124283 tgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaat 40124336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 21603751 - 21603675
Alignment:
Q  125 agtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtc 201  Q
    ||||| |||||||||  ||| | |||||||||||| |||||||| |   | ||||||||| ||||||||||||||||    
T  21603751 agtagtcacaatagtccttcgacgtatcaaaatttcaaaatagtccttgattgtccactttgttagtcaaaatagtc 21603675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 29282802 - 29282849
Alignment:
Q  88 agggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaat 136  Q
    |||||||| ||||||||| ||| |||||||| |||||||||||||||||    
T  29282802 agggtaaa-agtcattttgatccctgaatgtataacgagtagccacaat 29282849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 29488701 - 29488733
Alignment:
Q  137 agttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||| ||||||||||||||||||||||||||||    
T  29488701 agttcttcaatgtatcaaaattttaaaatagtt 29488733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 33583378 - 33583414
Alignment:
Q  132 acaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  33583378 acaatagttcttcaatgtattaaaattttaaaatagt 33583414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 55132642 - 55132571
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaat 165  Q
    |||||||||||| |||||||||||||||| ||| || || ||||||| ||||||||||||||||||||||||    
T  55132642 aatagtcattttgatctctgaatgtgtaaggagcagtcaaaatagtttttcaatgtatcaaaattttaaaat 55132571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 40317869 - 40317747
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||||||| |||  ||||||||||| || | | ||||||||||  ||||||||| ||| |||||||||||| |   | ||| ||||| |||| |||    
T  40317869 aatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaatttttaaaatagtccttgattgtacactttgttaatca 40317770  T
Q  194 aaatagtctctaacgttaaaata 216  Q
    ||||||||||| |||||||||||    
T  40317769 aaatagtctctgacgttaaaata 40317747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 40327943 - 40327821
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||||||| |||  ||||||||||| || | | ||||||||||  ||||||||| ||| |||||||||||| |   | ||| ||||| |||| |||    
T  40327943 aatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaatttttaaaatagtccttgattgtacactttgttaatca 40327844  T
Q  194 aaatagtctctaacgttaaaata 216  Q
    ||||||||||| |||||||||||    
T  40327843 aaatagtctctgacgttaaaata 40327821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 13834345 - 13834450
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgtt 210  Q
    |||||||||||| ||||| ||| ||||||   ||||| |||||||||||||||||||| |   | ||| ||||| ||||||||||||||||| |||| ||    
T  13834345 ctgaatgtgtaaggagtaaccataatagtccctcaatttatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaatagtctttaacatt 13834444  T
Q  211 aaaata 216  Q
    ||||||    
T  13834445 aaaata 13834450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 42375338 - 42375214
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||||||| ||   ||||||||||| |||||||||||||| || || |||||||| |||||| ||| |||||    | | | |||||||||||| |    
T  42375338 aatagtcattttgattattgaatgtgtaatgagtagccacaataattctttaatgtatcgaaatttcaaagtagtttttgattctgcacttcgttagtta 42375239  T
Q  194 aaatagtctctaacgttaaaatagt 218  Q
    ||||||||||| || ||||||||||    
T  42375238 aaatagtctctgacattaaaatagt 42375214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 17381285 - 17381420
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  |  ||||||||||| | ||||| |||||||||  |||||||||||||||||| |||| |||     |  |||||||| ||||||||    
T  17381285 aatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtctctgatagtccactttgttagtca 17381384  T
Q  194 aaatagtctctaacgttaaaatagttcttcaatact 229  Q
    ||||||||||||||| | ||||| ||| | ||||||    
T  17381385 aaatagtctctaacgcttaaataattccttaatact 17381420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 17753259 - 17753334
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagt-tgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| |||||||||| ||||| |||||| |||||||||   |||||||||||||||||| ||||||||    
T  17753259 aatagtcattttgatctctgaatatgtaatgagtagtcacaatagtcatttcaatgtatcaaaatttcaaaatagt 17753334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 12034383 - 12034517
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  || |||||||| |||||||||| |||||||||   ||||||||||||||||  ||||||||     | |||  |||| ||||||||    
T  12034383 aatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgtatactttgttagtca 12034482  T
Q  194 aaatagtctctaacgttaaaatagttcttcaatac 228  Q
    ||||||||||| ||  ||||||| | |||||||||    
T  12034483 aaatagtctctgacactaaaataatccttcaatac 12034517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 20217540 - 20217486
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||| ||||||||||||||||||||   ||||||||||||||||||||||||    
T  20217540 tgaatgtataacgagtagccacaatagtctctcaatgtatcaaaattttaaaata 20217486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 32934245 - 32934123
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||| |||||||  || |||||||||||| ||||  ||| ||||||   |||||||||||||||||||||||||||    | ||| ||||| | ||||||    
T  32934245 aataatcattttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaattttaaaatagtttttgattgtgcactttgctagtca 32934146  T
Q  194 aaatagtctctaacgttaaaata 216  Q
    ||||||| |||||| ||||||||    
T  32934145 aaatagtttctaacattaaaata 32934123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 4215253 - 4215149
Alignment:
Q  113 gaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaa 212  Q
    ||||||||||||||||| | |||||||   |||||| |||||||||||||||||||     | ||| |||||||||| |||||||||||||| || ||||    
T  4215253 gaatgtgtaacgagtagtcgcaatagtccctcaatgaatcaaaattttaaaatagtctcggattgtgcacttcgttaatcaaaatagtctct-acattaa 4215155  T
Q  213 aatagt 218  Q
    ||||||    
T  4215154 aatagt 4215149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 40407725 - 40407668
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| ||||| ||| ||||||  |||||||||||||||||||||||||||    
T  40407725 ctgaatgtgtaaggagtaaccataatagtccttcaatgtatcaaaattttaaaatagt 40407668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 51234568 - 51234447
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||| ||| |||||||||||| ||| ||||||  | ||||||| |||| | || |||||||||||||||||    || | | || |||||||||||    
T  51234568 aatagtcacttttatctctgaatgtataatgagtagttataatagtttttcattataacaaaattttaaaatagtctctaactatgcatttcgttagtca 51234469  T
Q  194 aaatagtctctaacgttaaaat 215  Q
    ||||||||||| | ||||||||    
T  51234468 aaatagtctctgatgttaaaat 51234447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 9297347 - 9297426
Alignment:
Q  88 agggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||||| |||  |||||||||| | | |||||||||||||  |||||| |||| |||||||||||||||    
T  9297347 agggtaaatagtcattttgatccttgaatgtgtaccaa-tagccacaatagtccttcaatatatcgaaattttaaaatagt 9297426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 11358450 - 11358573
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||| |||||||  || |||||||| | ||||| ||||||||| ||   |||||||||| |||||  |||||| | ||  | ||| ||||||||||||||    
T  11358450 aataatcattttagtcactgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtca 11358548  T
Q  194 aaatagtctctaacgttaaaatagt 218  Q
    ||||||||||| |||||||||||||    
T  11358549 aaatagtctctgacgttaaaatagt 11358573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 12922538 - 12922430
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  | | ||||| ||||| |||||||||| ||| |  || |||||||||||||||||||||||||||  | | | || ||||||||||     
T  12922538 aatagtcattttagtttttgaatttgtaatgagtagccacgataatcttttaatgtatcaaaattttaaaatagttcattattttgcatttcgttagtcg 12922439  T
Q  194 aaatagtct 202  Q
    |||||||||    
T  12922438 aaatagtct 12922430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 29223488 - 29223396
Alignment:
Q  124 gagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaata 216  Q
    |||||| ||||||||||  ||||| ||||||||||||| |||| | ||  | ||| ||||  ||||||||||||||||||||||| |||||||    
T  29223488 gagtagtcacaatagttcatcaatatatcaaaattttataataatccatgattgtgcactatgttagtcaaaatagtctctaacgctaaaata 29223396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 35763053 - 35763133
Alignment:
Q  88 agggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||  |||||||| |||||||||||||||||||||| |||||||||  |  || |||||||||||  ||||||||    
T  35763053 agggtaaatgatcattttcgtctctgaatgtgtaacgagtagtcacaatagtcatcgaacgtatcaaaattcaaaaatagt 35763133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 46805754 - 46805858
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||| ||||||| ||||||  | |||||||||||||||||||   ||||||||| ||||||||||| ||||     | ||| ||||||||||||||    
T  46805754 aatagtcagtttcatccctgaatacggaacgagtagccacaatagtacctcaatgtattaaaattttaaagtagtcattgattgtacacttcgttagtca 46805853  T
Q  194 aaata 198  Q
    |||||    
T  46805854 aaata 46805858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 11839769 - 11839876
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||| ||||||  ||| ||||| ||||||||||||||||||||||   ||||| |||| |||||| |||||||| |   | ||| ||| ||||||||||    
T  11839769 aatagccattttggtctatgaatttgtaacgagtagccacaatagtccctcaatatatcgaaatttcaaaatagtcccagattgtgcacctcgttagtca 11839868  T
Q  194 aaatagtc 201  Q
    ||||||||    
T  11839869 aaatagtc 11839876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 4161643 - 4161697
Alignment:
Q  114 aatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||| |||||| |||||||||  |||||||||||||||||| ||||||||    
T  4161643 aatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaaatagt 4161697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 971863 - 971920
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||| |||||||||| | |||||||||  |||||||||||||||||| ||||||||    
T  971863 ctgaatttgtaacgagttgtcacaatagtcattcaatgtatcaaaatttcaaaatagt 971920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 1758318 - 1758407
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtc 201  Q
    ||||||||||| ||||||||| |||||    ||||||||||||||||| |||||||||    | |||  |||||||||||||||||||||    
T  1758318 tgaatgtgtaaggagtagccataatagacactcaatgtatcaaaatttcaaaatagtttcttattgtgtacttcgttagtcaaaatagtc 1758407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 11840139 - 11840018
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  || ||||||| |||| |||||| | ||||||    ||||||||||||||||| |||||||| |   | ||| ||||| |||| |||    
T  11840139 aatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtccctgattgtgcactttgttaatca 11840040  T
Q  194 aaatagtctctaacgttaaaat 215  Q
    |||||||| || ||||||||||    
T  11840039 aaatagtccctgacgttaaaat 11840018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 12163038 - 12163114
Alignment:
Q  89 gggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||||||||| |||| ||  ||||||||| ||||||| ||||||||| | ||||||||||| |||||| ||||||    
T  12163038 gggtaaatagtcagtttcgtcattgaatgtgttacgagtaaccacaatag-tcttcaatgtatcgaaatttcaaaata 12163114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 38080992 - 38080919
Alignment:
Q  143 tcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaata 216  Q
    ||||||||||||||||||||||||||  || | | | || |||||||||||||||||| | |||| ||||||||    
T  38080992 tcaatgtatcaaaattttaaaatagtctacgattatgcatttcgttagtcaaaatagtttgtaacattaaaata 38080919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 51150890 - 51150963
Alignment:
Q  143 tcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaata 216  Q
    ||||||||||||||||||||||||||||   | ||| || || |||||| ||||||||| ||||| ||||||||    
T  51150890 tcaatgtatcaaaattttaaaatagttcgtgattgtgcattttgttagtgaaaatagtccctaacattaaaata 51150963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 5979420 - 5979456
Alignment:
Q  180 cacttcgttagtcaaaatagtctctaacgttaaaata 216  Q
    ||||||||||||||||||||||||| |||||||||||    
T  5979420 cacttcgttagtcaaaatagtctctgacgttaaaata 5979456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 46804774 - 46804866
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctct 204  Q
    ||||| ||||||||| ||  ||||||||   ||||||||||||||||||||||||||     | ||| ||||| |||||||||||||||||||    
T  46804774 tgaatatgtaacgagcagtgacaatagtccctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagtctct 46804866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 48648240 - 48648165
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    ||||||||||||  ||| ||||| ||||||||||| ||| ||||||| |  ||| |||| ||||||||||||||||    
T  48648240 aatagtcattttgttctatgaatttgtaacgagtaaccataatagttataaaatatatcgaaattttaaaatagtt 48648165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 12922184 - 12922242
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    ||||||||||||  ||||| |||||||||  ||||||||||| |||||| |||||||||    
T  12922184 ctgaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaaatagtt 12922242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 35255544 - 35255494
Alignment:
Q  118 tgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| |||||||||   ||||||||| ||||||||||||||||    
T  35255544 tgtaacgagtagtcacaatagtctctcaatgtattaaaattttaaaatagt 35255494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 6365031 - 6364962
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaa 163  Q
    |||| ||||||| |||| |||||||||||| ||||| ||||||| |  || |||||| ||||||||||||    
T  6365031 aataatcattttaatctttgaatgtgtaactagtagtcacaataatcttttaatgtaacaaaattttaaa 6364962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 13834597 - 13834540
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| |||||| ||||| |||  || ||||||| ||||||||||||||||    
T  13834597 ctgaatgtgtaatgagtagtcacaacagtcttttaatgtattaaaattttaaaatagt 13834540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 29223139 - 29223220
Alignment:
Q  117 gtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaata 198  Q
    |||||| |||||| ||||||| || |||||||||| ||||||| ||||| ||| |  | ||| || ||||||||||||||||    
T  29223139 gtgtaatgagtagtcacaataattcttcaatgtataaaaatttcaaaatcgttaatgattgtgcaattcgttagtcaaaata 29223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 35075646 - 35075743
Alignment:
Q  118 tgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaat 215  Q
    ||||| |||||| ||||||| |  || ||||| ||||||||||||||||||   | | ||| ||||| ||| |||||||||||||||  |||||||||    
T  35075646 tgtaatgagtagtcacaataatatttgaatgtgtcaaaattttaaaatagtcatcgactgtacactttgttcgtcaaaatagtctcttccgttaaaat 35075743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 51151108 - 51151051
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgt-tcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||||| |||||||  | | ||||||||| ||||||||||||||||    
T  51151108 tgaatgtgtaacgagtagtcacaataaatctctcaatgtattaaaattttaaaatagt 51151051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 2162049 - 2161994
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||||| ||||||||||  ||  |||||| |||||||||||||||    
T  2162049 tgaatgtgtaacgagtagtcacaatagttcatcggtgtatc-aaattttaaaatagt 2161994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 8755983 - 8755947
Alignment:
Q  180 cacttcgttagtcaaaatagtctctaacgttaaaata 216  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  8755983 cacttcgttaatcaaaatagtctctaacattaaaata 8755947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 14810516 - 14810440
Alignment:
Q  125 agtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtc 201  Q
    ||||| |||||||||  ||| | |||||||||||| ||||||||||   | |||||||||  |||||||||||||||    
T  14810516 agtagtcacaatagtccttcgacgtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaatagtc 14810440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 28137674 - 28137619
Alignment:
Q  111 ctgaatgtgtaacgagtagccaca--atagttgttcaatgtatcaaaattttaaaa 164  Q
    ||||||||||||| ||||||||||  |||||| |||||| ||||||||||| ||||    
T  28137674 ctgaatgtgtaacaagtagccacaatatagttcttcaatatatcaaaatttaaaaa 28137619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 46216991 - 46217019
Alignment:
Q  143 tcaatgtatcaaaattttaaaatagttca 171  Q
    |||||||||||||||||||||||||||||    
T  46216991 tcaatgtatcaaaattttaaaatagttca 46217019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 50384665 - 50384637
Alignment:
Q  143 tcaatgtatcaaaattttaaaatagttca 171  Q
    |||||||||||||||||||||||||||||    
T  50384665 tcaatgtatcaaaattttaaaatagttca 50384637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 6728100 - 6727969
Alignment:
Q  95 atagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaa 194  Q
    |||||||||||| || ||||||||||||||| ||| |||||||||  ||||||| |||||||||  ||||||||   | | ||| ||||  |||||||||    
T  6728100 atagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagtcttccattgtgcactatgttagtcaa 6728001  T
Q  195 aatagtctctaacgttaaaatagttcttcaat 226  Q
    |||||||| | || |||||||||| |||||||    
T  6728000 aatagtctttgactttaaaatagtgcttcaat 6727969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 40967427 - 40967348
Alignment:
Q  89 gggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||||| ||||||||| || ||||| ||||||||||| |  ||||| ||||| ||||| |||||||||    
T  40967427 gggtaaatagtcattttcgtctctgaatatgcaacgaatagccacaataatccttcaaagtatcgaaattataaaatagt 40967348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 45679792 - 45679721
Alignment:
Q  145 aatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaata 216  Q
    ||||||| |||||||||||||||||||  | ||| || ||||||||||||||||||| |||| |||||||||    
T  45679792 aatgtataaaaattttaaaatagttcatgattgtgcaattcgttagtcaaaatagtccctaatgttaaaata 45679721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 50155528 - 50155586
Alignment:
Q  110 tctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    ||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||    
T  50155528 tctgaatgtgtaatgagtagtcataatagtt-ttcaatgtatcaaaattttaaaatagtt 50155586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 2998896 - 2998986
Alignment:
Q  110 tctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagt 200  Q
    |||||||||||||| ||||  |||||||||   | ||||||||||||||||||||||||||| || ||| |||||  ||| ||||||||||    
T  2998896 tctgaatgtgtaacaagtaatcacaatagtctgtaaatgtatcaaaattttaaaatagttcataattgtacactttattaatcaaaatagt 2998986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 33747288 - 33747380
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctct 204  Q
    |||||||||||| ||||| |||||||||| ||||||||||| |||||| |||| |||     | | | |||||||||||||||||||||||||    
T  33747288 tgaatgtgtaacaagtagtcacaatagttcttcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtcaaaatagtctct 33747380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 35684977 - 35684873
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgtt 210  Q
    ||||||||| || ||||||  ||||||||  |||||||||||||||| | |||||||| ||  | ||| || |||||||||||||||||||  ||| |||    
T  35684977 ctgaatgtgcaatgagtagttacaatagtccttcaatgtatcaaaatctcaaaatagtccatgattgtgcagttcgttagtcaaaatagtcattaatgtt 35684878  T
Q  211 aaaat 215  Q
    |||||    
T  35684877 aaaat 35684873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 3602937 - 3602862
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    ||||||||||||  | ||||||| |||||||| || |||||||| || || ||||||||||| |||||||||||||    
T  3602937 aatagtcattttattttctgaatatgtaacgaataaccacaataattttttaatgtatcaaacttttaaaatagtt 3602862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 9553190 - 9553115
Alignment:
Q  93 aaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||| ||||| |||| ||||| | |||||| ||  |||||||||| |||||||||||||| ||||||||||||    
T  9553190 aaatagtaatttttatctatgaatatataacgaataatcacaatagttcttcaatgtatcaaacttttaaaatagt 9553115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 34177278 - 34177385
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  || |||||| ||||||||| ||||||||| ||  |||||| ||||||||||| |||||||| |   | |||||| || ||||||||    
T  34177278 aatagtcattttagtccctgaatatgtaacgaggagccacaatcgtctttcaatatatcaaaatttcaaaatagtccttgattgtccattttgttagtca 34177377  T
Q  194 aaatagtc 201  Q
    || |||||    
T  34177378 aattagtc 34177385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 46500862 - 46500787
Alignment:
Q  132 acaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaac 207  Q
    ||||||||| | |||| ||||||||||||||||||||||| || | |  |||| ||||||||| ||||||||||||    
T  46500862 acaatagttctacaatatatcaaaattttaaaatagttcataattatgtactttgttagtcaatatagtctctaac 46500787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 50155864 - 50155773
Alignment:
Q  110 tctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtc 201  Q
    |||||||| |||||||||||||||||||||  |||||||||||||| ||| |||| |  |||  | ||| || ||| |||||||||||||||    
T  50155864 tctgaatgcgtaacgagtagccacaatagtcattcaatgtatcaaactttcaaaaaaaatcatgattgtacaattcattagtcaaaatagtc 50155773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 6450059 - 6450129
Alignment:
Q  145 aatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaat 215  Q
    |||||||||||||| ||||||||||  ||| ||| |||| | | |||||||||||||||| ||||||||||    
T  6450059 aatgtatcaaaattctaaaatagttttcaattgtgcactacttcagtcaaaatagtctctgacgttaaaat 6450129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 6541007 - 6541081
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| ||| ||||||||||||||| ||| || ||||||  || |||||||||||||||  |||||||    
T  6541007 aatagtcattttaatccctgaatgtgtaacgaatagtcataatagtcctttaatgtatcaaaatttccaaatagt 6541081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 30050317 - 30050375
Alignment:
Q  110 tctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||| | ||| ||||||| || |||||||||||| ||||||||||||||    
T  30050317 tctgaatgtgtaacaaatagtcacaataattcttcaatgtatcataattttaaaatagt 30050375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 35621666 - 35621592
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| |||  | |||||||||||||| | |||||||||| || ||||||| ||| ||||||||||||    
T  35621666 aatagtcattttgatccttaaatgtgtaacgagttgtcacaatagtttttaaatgtattaaatttttaaaatagt 35621592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 10018721 - 10018778
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||| |||||| ||||| |||||||||   ||||||||||||||||||||||||||    
T  10018721 ctgaatatgtaaccagtagtcacaatagtctatcaatgtatcaaaattttaaaatagt 10018778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 16192331 - 16192274
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||||||||| ||||| || |||| |  ||||||||||||||||||||||||||||    
T  16192331 tgaatgtgtaacaagtagtcataatattccttcaatgtatcaaaattttaaaatagtt 16192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 28620440 - 28620481
Alignment:
Q  128 agccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  28620440 agccacaatagttctttaatgtatcaaaattttaaaatagtt 28620481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 32670085 - 32670020
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattt 159  Q
    |||||||||||| ||| ||||||||||||||||||  |||||||||  ||||||| ||| ||||||    
T  32670085 aatagtcattttgatccctgaatgtgtaacgagtattcacaatagtccttcaatggatcgaaattt 32670020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 34177590 - 34177469
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  || |||||||||||| ||||||| ||||||||  |||||||  |  |||||| |||||||| ||  | ||| || |  ||||||||    
T  34177590 aatagtcattttggtccctgaatgtgtaatgagtagctacaatagtccttcaatgatttgaaatttcaaaatagtccatgattgtgcattatgttagtca 34177491  T
Q  194 aaatagtctctaacgttaaaat 215  Q
    ||||||||||| || |||||||    
T  34177490 aaatagtctcttacattaaaat 34177469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 45679519 - 45679580
Alignment:
Q  108 tctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||||||||||||||||||| ||||||| |   |||| |||| |||||||||||||||||    
T  45679519 tctctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaattttaaaatagtt 45679580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 8068975 - 8069058
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaa 196  Q
    |||||||||||||| ||  |||||||||| |||||||||| |||||| ||||||||||||  | | | ||||| |||||||||||    
T  8068975 tgaatgtgtaacgaataatcacaatagtt-ttcaatgtattaaaattctaaaatagttcatgattttgcactttgttagtcaaaa 8069058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 39330287 - 39330195
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctct 204  Q
    ||||||||||| |||||  |||||||||| ||| ||||||||||| || || ||||| ||  | ||| || ||||||||| ||||||||||||    
T  39330287 tgaatgtgtaatgagtaatcacaatagtttttcgatgtatcaaaacttcaatatagtccatgattgtgcaattcgttagttaaaatagtctct 39330195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 50804285 - 50804341
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||| | |||||||||  || ||||| ||||||||||||||||||    
T  50804285 tgaatgtgtaacgagtggtcacaatagtctttgaatgtgtcaaaattttaaaatagt 50804341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 19464236 - 19464287
Alignment:
Q  114 aatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaat 165  Q
    |||||||||| ||||| |||||||||  |||||||||||||||||| |||||    
T  19464236 aatgtgtaacaagtagtcacaatagtccttcaatgtatcaaaatttaaaaat 19464287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 27901008 - 27900934
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||| ||| |||  ||||||||||| |||||| || ||||||  |||||||||| |||| |||||||||||    
T  27901008 aatagtcaatttgatccttgaatgtgtaatgagtagtcagaatagtccttcaatgtataaaaaatttaaaatagt 27900934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 6541321 - 6541241
Alignment:
Q  149 tatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaatagttcttcaatact 229  Q
    |||||||||||||||||| | ||  | ||| ||||| || |||||||||||||||  ||||||||||  | ||||||||||    
T  6541321 tatcaaaattttaaaataatccatgattgtgcactttgtaagtcaaaatagtctccgacgttaaaattatccttcaatact 6541241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 8987515 - 8987463
Alignment:
Q  118 tgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttc 170  Q
    ||||||||||| |||||||||   || |||||||| |||||||||||||||||    
T  8987515 tgtaacgagtaaccacaatagaattttaatgtatcgaaattttaaaatagttc 8987463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 6217748 - 6217640
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  ||  |||||||||| ||| |||||||||||||   ||||||||||||||||| |||||||| ||  | | | ||||||||||||||    
T  6217748 aatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatttcaaaatagtccatgattatgcacttcgttagtca 6217649  T
Q  194 aaatagtct 202  Q
    |||||||||    
T  6217648 aaatagtct 6217640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 37853557 - 37853434
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||||||| ||   |||||||  ||||||||| || ||||||| ||||| |||| |||||||||||||||||   || |||  |||| ||||||||    
T  37853557 aatagtcattttgattcgtgaatgtaaaacgagtagtcataatagtt-ttcaacgtattaaaattttaaaatagtttttaattgtatactttgttagtca 37853459  T
Q  194 aaatagtctctaacgttaaaatagt 218  Q
    |||||||||||||| ||||||||||    
T  37853458 aaatagtctctaacattaaaatagt 37853434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 1276846 - 1276772
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||| ||||||| || | |||||||||||||||||||||||||| | | |||||| |||||||||||||| ||||    
T  1276846 aatattcattttgatatttgaatgtgtaacgagtagccacaataatcgatcaatgcatcaaaattttaaagtagt 1276772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 8407303 - 8407226
Alignment:
Q  92 taaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    ||||||||||||||||||  | |||||||||||| || ||| | |||||  | |||||||||||||||||||||||||    
T  8407303 taaatagtcattttcatccataaatgtgtaacgaataaccatattagtttctgaatgtatcaaaattttaaaatagtt 8407226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 16750343 - 16750259
Alignment:
Q  145 aatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaatagttcttcaatact 229  Q
    ||||||||||||||||||||||||||| || ||| ||||   ||||||| ||| |||||| || |||||||| || |||||||||    
T  16750343 aatgtatcaaaattttaaaatagttcataattgtgcactctattagtcacaatcgtctctgacattaaaataatttttcaatact 16750259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 42420633 - 42420557
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttc 170  Q
    |||||| |||||  |||||||||||||||||  ||| |||||| ||  || ||||||||||||||||||||||||||    
T  42420633 aatagttattttggtctctgaatgtgtaacgtatagtcacaattgtctttaaatgtatcaaaattttaaaatagttc 42420557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 7756776 - 7756653
Alignment:
Q  95 atagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaa 194  Q
    |||||||||||  || || |||||| ||||| || |||||||||||  | |||||||  |||||| ||||||||  |  | ||| || ||||||||||||    
T  7756776 atagtcattttggtccctaaatgtgcaacgaataaccacaatagttcctgaatgtattgaaatttcaaaatagtcaatgattgtacaattcgttagtcaa 7756677  T
Q  195 aatagtctctaacgttaaaatagt 218  Q
    ||||||||||  ||||||||||||    
T  7756676 aatagtctctcgcgttaaaatagt 7756653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 4400639 - 4400711
Alignment:
Q  92 taaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaat 165  Q
    |||||||||||||| ||| ||| || |||||||||||||||||||| |  || |||||||| ||||||||||||    
T  4400639 taaatagtcattttgatc-ctggatatgtaacgagtagccacaatattccttgaatgtatctaaattttaaaat 4400711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 219
Target Start/End: Original strand, 19342347 - 19342378
Alignment:
Q  188 tagtcaaaatagtctctaacgttaaaatagtt 219  Q
    ||||||||||||||||||||||||||||||||    
T  19342347 tagtcaaaatagtctctaacgttaaaatagtt 19342378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 42932806 - 42932861
Alignment:
Q  114 aatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||||||||||||| |  ||||||| || |||||||| ||||||||||||||||    
T  42932806 aatgtgtaacgagtagtcgaaatagttttttaatgtatcgaaattttaaaatagtt 42932861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 16127051 - 16127125
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||||  || || ||||||||| |||||| |||||||||   |||| |||||||||||| ||||||||    
T  16127051 aatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagt 16127125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 7314263 - 7314130
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||||||| |||||  |||||||||||||||  |||||||||   ||||| || | ||| |||||||||||| |  | ||| || ||| | |||||    
T  7314263 aatagtcattttgatctccaaatgtgtaacgagtaagcacaatagtccatcaatataaccaaagtttaaaatagtttatgattgtgcatttcatcagtca 7314164  T
Q  194 aaatagtctctaacgttaaaatagttcttcaata 227  Q
    || || | ||||| | ||||||||||||| ||||    
T  7314163 aagtattttctaatgataaaatagttctttaata 7314130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 14121774 - 14121843
Alignment:
Q  95 atagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaa 164  Q
    ||||||||||| || |||||||||||||| |||  |||| |||||| || | ||| ||||||||||||||    
T  14121774 atagtcatttttatttctgaatgtgtaacaagtgaccacgatagttttttattgtgtcaaaattttaaaa 14121843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 18970319 - 18970262
Alignment:
Q  113 gaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttc 170  Q
    |||||| ||||||||||||||||||||  || |||||||| |||||  ||||||||||    
T  18970319 gaatgtataacgagtagccacaatagtccttgaatgtatccaaattcaaaaatagttc 18970262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 30118492 - 30118525
Alignment:
Q  131 cacaatagttgttcaatgtatcaaaattttaaaa 164  Q
    |||||||||| |||||||||||||||||||||||    
T  30118492 cacaatagttcttcaatgtatcaaaattttaaaa 30118525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 32503234 - 32503311
Alignment:
Q  89 gggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||||||| |||||| ||  | |||| ||||||||||| || |||||||  ||||||||||| ||||| ||||||    
T  32503234 gggtaaatagttattttcgtccatcaatgggtaacgagtaggcaaaatagtttatcaatgtatcataatttcaaaata 32503311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 27001473 - 27001417
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||| |||||| |||||||||   || || ||||||||||||||||||||    
T  27001473 tgaatgtgtaatgagtagtcacaatagtctctcgatatatcaaaattttaaaatagt 27001417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 51889758 - 51889822
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaatt 158  Q
    |||||||||||| |||||||||||||||| |||||| |||||||||  |||||||||||||||||    
T  51889758 aatagtcattttgatctctgaatgtgtaaggagtagtcacaatagtctttcaatgtatcaaaatt 51889822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 621962 - 621842
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||| |||  ||||||||||||||| |||||| || ||||||   ||||||||||||||||| |||||||| |  || ||| ||||| ||||||||    
T  621962 aatagtcactttggtctctgaatgtgtaatgagtagtcataatagtc--tcaatgtatcaaaatttcaaaatagtccctaactgtgcactttgttagtca 621865  T
Q  194 aaatagtctctaacgttaaaata 216  Q
    ||||||||| | | |||||||||    
T  621864 aaatagtctttgatgttaaaata 621842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 22235208 - 22235309
Alignment:
Q  114 aatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaa 213  Q
    |||||||||  | |||||||||||||  || ||||||| ||||||| ||||||||     | ||| ||||||||||||||||||||||||| ||||||||    
T  22235208 aatgtgtaataaatagccacaatagtccttgaatgtattaaaatttcaaaatagtcgctgattgtacacttcgttagtcaaaatagtctctcacgttaaa 22235307  T
Q  214 at 215  Q
    ||    
T  22235308 at 22235309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 24255221 - 24255298
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttca 171  Q
    ||||||||||||  |||||||||||| ||||||| | || |||||||  |||||||||||||| ||| ||||||||||    
T  24255221 aatagtcattttactctctgaatgtgaaacgagtggtcataatagttcctcaatgtatcaaaaattttaaatagttca 24255298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 284321 - 284395
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| |||| ||||||||||| |||||| |||| |||||  | |||||||||||||| || ||||||    
T  284321 aatagtcatttttatctttgaatgtgtaaagagtagtcacactagtttctaaatgtatcaaaattctacaatagt 284395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 14984408 - 14984513
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  || ||||||||||||||||||| |||||||||   ||||| |||| |||||| |||||| | |   | ||| ||||||||||||||    
T  14984408 aatagtcattttggtc-ctgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagtca 14984506  T
Q  194 aaatagt 200  Q
    |||||||    
T  14984507 aaatagt 14984513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 46848475 - 46848401
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||| |||  || |||||||||||| |||||| || |||||||  ||||||||||||||||| ||||||||    
T  46848475 aatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaatagt 46848401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 53706057 - 53705947
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    ||||||||||||  ||| ||| |||||||| |||||||| ||||||   ||| |||||| |||||| |||||||| || || ||| ||||| || |||||    
T  53706057 aatagtcattttggtctttgattgtgtaacaagtagccaaaatagtccctcactgtatcgaaatttcaaaatagtccataattgtgcactttgtcagtca 53705958  T
Q  194 aaatagtctct 204  Q
    ||||| |||||    
T  53705957 aaataatctct 53705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 23567404 - 23567359
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagt 139  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||    
T  23567404 aatagtcattttgatccctgaatgtgtaacgagtggccacaatagt 23567359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 23195803 - 23195755
Alignment:
Q  118 tgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||||||||| ||||||||  |||||||||| ||||||||||||||    
T  23195803 tgtaacgagtagctacaatagtctttcaatgtattaaaattttaaaata 23195755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 26500104 - 26500020
Alignment:
Q  80 tgatttgtagggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaa 164  Q
    |||||| |||||  |||||||||||| ||||||||||||||||  |||||  | |||||||  | ||||||| ||||||||||||    
T  26500104 tgatttttaggggtaatagtcattttgatctctgaatgtgtaattagtagttaaaatagtttcttaatgtattaaaattttaaaa 26500020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 47199726 - 47199782
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||| ||| || ||||||| || |||||||||||||||||| ||||||||    
T  47199726 tgaatgtgtaatgagaagtcacaataattcttcaatgtatcaaaatttcaaaatagt 47199782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 3941865 - 3941794
Alignment:
Q  145 aatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaata 216  Q
    |||||||||||||||||||||||| |  || ||  || || |||||||||||||||||||||| || |||||    
T  3941865 aatgtatcaaaattttaaaatagtccttaattgaacattttgttagtcaaaatagtctctaacattgaaata 3941794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 14195027 - 14194954
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||| ||| | ||||||||  | |||||||||||||||  || ||||||||||||||| ||||||||    
T  14195027 aatagtcattttgatccc-gaatgtgtgcctagtagccacaatagtcctttaatgtatcaaaatttcaaaatagt 14194954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 26483059 - 26483113
Alignment:
Q  115 atgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||| |||||||||| |||||||||  || |||||||||||||| ||||||||||    
T  26483059 atgtataacgagtagacacaatagtcatttaatgtatcaaaattctaaaatagtt 26483113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 38989910 - 38989872
Alignment:
Q  180 cacttcgttagtcaaaatagtctctaacgttaaaatagt 218  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  38989910 cacttcgttggtcaaaatagtctctgacgttaaaatagt 38989872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 7672528 - 7672487
Alignment:
Q  186 gttagtcaaaatagtctctaacgttaaaatagttcttcaata 227  Q
    |||||||||||||||||||||| |||||||| ||| ||||||    
T  7672528 gttagtcaaaatagtctctaacattaaaatacttcatcaata 7672487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 30669702 - 30669633
Alignment:
Q  89 gggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaatt 158  Q
    |||| |||||| ||||| |||| |||||||| ||||||||| || |||||||  | ||||||||||||||    
T  30669702 gggttaatagttattttgatctttgaatgtgcaacgagtagtcataatagtttctgaatgtatcaaaatt 30669633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 36080892 - 36080823
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaa 163  Q
    |||||||||||| ||  || ||||||||| |  ||| |||||||||| || |||||||||||||||||||    
T  36080892 aatagtcattttgattcctcaatgtgtaatggttagtcacaatagttttttaatgtatcaaaattttaaa 36080823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 37326612 - 37326657
Alignment:
Q  114 aatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattt 159  Q
    ||||||||||||||| ||||||||||| |||||| |||| ||||||    
T  37326612 aatgtgtaacgagtaaccacaatagttcttcaatctatcgaaattt 37326657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 1324509 - 1324565
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||| |||||  ||||||| |  ||| |||||||||||||||||||||||    
T  1324509 tgaatgtgtaatgagtaatcacaataatccttcgatgtatcaaaattttaaaatagt 1324565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 25321775 - 25321715
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcac 172  Q
    |||||||||||||||||| ||||| | |   || |||||| ||||||||||||||||||||    
T  25321775 tgaatgtgtaacgagtaggcacaacaatctatctatgtattaaaattttaaaatagttcac 25321715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 28961895 - 28961935
Alignment:
Q  100 cattttcatctctgaatgtgtaacgagtagccacaatagtt 140  Q
    ||||||||||| |||||||||||||||| | ||||||||||    
T  28961895 cattttcatctttgaatgtgtaacgagttgacacaatagtt 28961935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 30669358 - 30669422
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaatt 158  Q
    |||||||||||| ||| || ||||||||| |||||| |||||||||   ||||||||| ||||||    
T  30669358 aatagtcattttgatccctaaatgtgtaaggagtagtcacaatagtatctcaatgtattaaaatt 30669422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 34294210 - 34294102
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||||||| |||  | ||||||||||||||| | |||| | |   ||| ||||||||||| ||||||||||  |  | ||| ||||| ||||||||    
T  34294210 aatagtcattttgatccttaaatgtgtaacgagtaactacaacaatatctcagtgtatcaaaatcttaaaatagtatatgattgtgcactttgttagtca 34294111  T
Q  194 aaatagtct 202  Q
    |||||||||    
T  34294110 aaatagtct 34294102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 1052399 - 1052505
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgtta 211  Q
    ||||| |||||||| || |||||||| || || ||||||||||||||||||||||||||  || | | |||| ||||| ||||||| ||||||||| |||    
T  1052399 tgaatatgtaacgaataaccacaataattttttaatgtatcaaaattttaaaatagttcttaattatacactacgttactcaaaattgtctctaacatta 1052498  T
Q  212 aaatagt 218  Q
    || ||||    
T  1052499 aattagt 1052505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 34703630 - 34703751
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||||||| |||  | ||||| |||||||||| |||||||||   |||||||||| |||||||||||||||    || ||| |||||||||  |||    
T  34703630 aatagtcattttgatccataaatgtataacgagtagtcacaatagtccatcaatgtatc-aaattttaaaatagtctctaattgttcacttcgttgatca 34703728  T
Q  194 aaatagtctctaacgttaaaata 216  Q
    |||||||||||||| ||||||||    
T  34703729 aaatagtctctaactttaaaata 34703751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 39608668 - 39608582
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaata 198  Q
    ||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||   || ||| || || |||||||||||||    
T  39608668 tgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaatagttttgaattgtacaatttgttagtcaaaata 39608582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 11458870 - 11458987
Alignment:
Q  93 aaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtc 192  Q
    ||||||||||||||||||||||||||||||  | || ||||||||||  ||||||||| |||| ||  |||||||| |  || |||  ||| |||| ||     
T  11458870 aaatagtcattttcatctctgaatgtgtaataaataaccacaatagtccttcaatgtagcaaagttccaaaatagtccctaattgtgtactccgttggtt 11458969  T
Q  193 aaaatagtctctaacgtt 210  Q
    ||||||||||||||||||    
T  11458970 aaaatagtctctaacgtt 11458987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 29196773 - 29196826
Alignment:
Q  113 gaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  29196773 gaatgtgtaacgaatagtcacaatagtttttcaatgtatcaaaattttaaaata 29196826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 5358208 - 5358282
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||| ||||||| || ||||||||| || |||  ||||||||  |||||||||||||||||||||||||||    
T  5358208 aatagtcactttcatccctaaatgtgtaatgaatagttacaatagtccttcaatgtatcaaaattttaaaatagt 5358282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 8062957 - 8062901
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||||||||||||||| |||||||||   ||||||||| ||||||||||||||||    
T  8062957 tgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagt 8062901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 23190966 - 23191028
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaa 156  Q
    |||||||||||| |||||||||||| |||||||||| || |||||||  ||||||||| ||||    
T  23190966 aatagtcatttttatctctgaatgtataacgagtagtcataatagttcgtcaatgtataaaaa 23191028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 23474540 - 23474614
Alignment:
Q  126 gtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagt 200  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||    | ||| |||||||||| ||||||||||    
T  23474540 gtagccataatagtccttcaatgtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagt 23474614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 1247516 - 1247573
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||| |||||||||||| ||||||||||  | ||||||| ||||||||||||||||    
T  1247516 ctgaatatgtaacgagtagtcacaatagtttcttaatgtattaaaattttaaaatagt 1247573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 18942738 - 18942861
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata--gttcacaagtgtccacttcgttagt 191  Q
    ||||||||||||  || |||||||||||| || ||| || ||||||   ||||||||||||||||||||||||   || |  | ||| || |||||||||    
T  18942738 aatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaattttaaaatatctttgatca-tgtgcatttcgttagt 18942836  T
Q  192 caaaatagtctctaacgttaaaata 216  Q
    | |||||||||||||| ||||||||    
T  18942837 ccaaatagtctctaacattaaaata 18942861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 25618244 - 25618187
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagtt 169  Q
    |||||||||||||| ||| |||| ||||| | |||||||| |||||||||||||||||    
T  25618244 tgaatgtgtaacgattagtcacagtagttttgcaatgtattaaaattttaaaatagtt 25618187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 38838734 - 38838677
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||||||||||| ||||||| |   ||||||||| ||||||||||||||||    
T  38838734 ctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagt 38838677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 5362523 - 5362467
Alignment:
Q  112 tgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||| ||||| |||||| ||||||| |  |||||||||||||||||||||||||||    
T  5362523 tgaatatgtaaggagtagtcacaataatcattcaatgtatcaaaattttaaaatagt 5362467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 5429586 - 5429526
Alignment:
Q  110 tctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttc 170  Q
    ||||||||||||| || |||  |||||| ||  ||||||||||||||||||||||||||||    
T  5429586 tctgaatgtgtaatgattaggtacaataattcctcaatgtatcaaaattttaaaatagttc 5429526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 19303663 - 19303592
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||||||||  ||||||||||| ||| |||| ||||||||||    ||||||||||||||||||||||||    
T  19303663 aatagtcattttggtctctgaatgtataaggagtggccacaatag-ccctcaatgtatcaaaattttaaaata 19303592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 23441486 - 23441574
Alignment:
Q  126 gtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaa 214  Q
    ||||||| ||||||  ||||||||||| ||||||||||||||||    | ||| |||||||||| |||||||||| | ||| |||||||    
T  23441486 gtagccataatagtccttcaatgtatcgaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagtttttaatgttaaaa 23441574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 11459122 - 11459071
Alignment:
Q  88 agggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagt 139  Q
    ||||||||| ||||||||| || ||||||||| ||||||||||| |||||||    
T  11459122 agggtaaattgtcattttcgtccctgaatgtgcaacgagtagccgcaatagt 11459071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 20889506 - 20889451
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||||||||| |||||||||||||||   |||||||||||| |||| ||||||    
T  20889506 ctgaatgtgtaacaagtagccacaatagtccctcaatgtatcaacatttcaaaata 20889451  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 6983276 - 6983350
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    ||||||||||||  ||  || |||||||| ||||| ||||||||||  ||||||| |||||||||||||| ||||    
T  6983276 aatagtcattttagtccatggatgtgtaaagagtaaccacaatagtccttcaatgaatcaaaattttaaagtagt 6983350  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 37502182 - 37502240
Alignment:
Q  108 tctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    |||||||||||||||||| || |||||||| |  || ||| ||||||||||||||||||    
T  37502182 tctctgaatgtgtaacgaataaccacaataatcttttaatatatcaaaattttaaaata 37502240  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 21401752 - 21401797
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagt 139  Q
    ||||||||||||  ||||| ||||||||||||||||| ||||||||    
T  21401752 aatagtcattttggtctctaaatgtgtaacgagtagctacaatagt 21401797  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 49078270 - 49078218
Alignment:
Q  114 aatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaata 166  Q
    ||||||||| ||||||  |||||||||  ||||||||||||||||| ||||||    
T  49078270 aatgtgtaatgagtagttacaatagttcctcaatgtatcaaaatttaaaaata 49078218  T

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Target: scaffold0329 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 6192 - 6318
Alignment:
Q  89 gggtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgtt 188  Q
    |||| |||||||||||   ||||| |||||| ||||||||| | |||||||   |||||||||||||||||||||||||| |   | |||  ||| ||||    
T  6192 gggttaatagtcatttcggtctctcaatgtgcaacgagtagtcccaatagtccatcaatgtatcaaaattttaaaatagtcctagattgtgaactccgtt 6291  T
Q  189 agtcaaaatagtctctaacgttaaaat 215  Q
     ||||||||||||| | ||||||||||    
T  6292 ggtcaaaatagtctttgacgttaaaat 6318  T

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Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 14738 - 14815
Alignment:
Q  91 gtaaatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagt 168  Q
    |||||| | ||||||||||  |||| |||||||||||||| |||||| |  |||||||||||||||||| ||||||||    
T  14738 gtaaattgccattttcatccttgaaagtgtaacgagtagcaacaataatccttcaatgtatcaaaatttgaaaatagt 14815  T

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Target: scaffold0687 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 1595 - 1690
Alignment:
Q  111 ctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaa 206  Q
    |||||||| ||| |||||| |  ||||||  ||||||||||||||||||||||||| ||    | ||| ||||||||| |||||||||||||||||    
T  1595 ctgaatgtataatgagtagtcggaatagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaa 1690  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 81296 - 81403
Alignment:
Q  94 aatagtcattttcatctctgaatgtgtaacgagtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtca 193  Q
    |||||||||||| |||  |||||||| || ||||||||||||||||   | | |||||  |||||| ||||||||| |  | ||| ||||||||||||||    
T  81296 aatagtcattttgatccttgaatgtgcaatgagtagccacaatagtatctgattgtattgaaatttcaaaatagtttatgattgtgcacttcgttagtca 81395  T
Q  194 aaatagtc 201  Q
    ||||||||    
T  81396 aaatagtc 81403  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 37363 - 37436
Alignment:
Q  145 aatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtctctaacgttaaaatagt 218  Q
    |||||||||||||| ||||||||| ||    ||| | |||||||||||||| || ||||| |||||||||||||    
T  37363 aatgtatcaaaattctaaaatagtccatgcttgtgcgcttcgttagtcaaagtattctctgacgttaaaatagt 37436  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 82918 - 82950
Alignment:
Q  186 gttagtcaaaatagtctctaacgttaaaatagt 218  Q
    |||| ||||||||||||||||||||||||||||    
T  82918 gttaatcaaaatagtctctaacgttaaaatagt 82950  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 29212 - 29288
Alignment:
Q  125 agtagccacaatagttgttcaatgtatcaaaattttaaaatagttcacaagtgtccacttcgttagtcaaaatagtc 201  Q
    ||||| |||||||||  ||| | |||||||||||| ||||||||||   | |||||||||  |||||||||||||||    
T  29212 agtagtcacaatagtccttcgacgtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaatagtc 29288  T

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