View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7930_high_11 (Length: 254)

Name: NF7930_high_11
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7930_high_11
NF7930_high_11
[»] scaffold0038 (4 HSPs)
scaffold0038 (8-254)||(43307-43552)
scaffold0038 (58-254)||(117172-117388)
scaffold0038 (60-193)||(27833-27965)
scaffold0038 (194-253)||(27986-28044)
[»] chr6 (13 HSPs)
chr6 (8-254)||(28243145-28243390)
chr6 (58-254)||(28325857-28326073)
chr6 (60-193)||(28227335-28227467)
chr6 (58-188)||(28181497-28181626)
chr6 (60-254)||(28297327-28297533)
chr6 (60-254)||(28514540-28514746)
chr6 (61-152)||(28185755-28185846)
chr6 (194-253)||(28227488-28227546)
chr6 (207-253)||(28181665-28181711)
chr6 (194-254)||(28185928-28185988)
chr6 (155-193)||(28185869-28185907)
chr6 (202-254)||(28150442-28150494)
chr6 (202-254)||(28098030-28098082)
[»] scaffold0019 (2 HSPs)
scaffold0019 (145-193)||(57963-58011)
scaffold0019 (196-254)||(57881-57940)
[»] chr4 (1 HSPs)
chr4 (194-254)||(5090540-5090600)


Alignment Details
Target: scaffold0038 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 43307 - 43552
Alignment:
Q  8 gtacaccacttaactcatgtttagcattcttacatagttacatataacacatttctttaattttctattttctaaccaattcatcttacagttgaaatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43307 gtacaccacttaactcatgtttagcattcttacatagttacatataacacatttctttaattttctattttctaaccaattcatcttacagttgaaatag 43406  T
Q  108 aagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaacaatatttgaattgtatttatacaactattatcaatatgtgatgcatttac 207  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43407 aaaatattaaatttattcttaacaagtgtaagttacttgtatg-caaaacaatatttgaattgtatttatacaactattatcaatatatgatgcatttac 43505  T
Q  208 tcaaacttatttgattgggtagggatggatatgaatacgagtttatt 254  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  43506 tcaaacttatttgattgggtaggaatggatatgaatacgagtttatt 43552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 58 - 254
Target Start/End: Original strand, 117172 - 117388
Alignment:
Q  58 atttctttaattttctattttctaaccaattcatcttacagttgaaatagaagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaac 157  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||    
T  117172 atttctttaattttctattttctaaccgattcatcttacagttgaaattggaaatattaattttattcttaacaagtgtaagttacttgtatgtcaaaac 117271  T
Q  158 aatatttgaattgtatttatacaac--------------------tattatcaatatgtgatgcatttactcaaacttatttgattgggtagggatggat 237  Q
    ||||||||||||||||| |||||||                    |||| | ||| || |||||||||||||||||||||||||||||||||| |||| |    
T  117272 aatatttgaattgtattcatacaacagttatcaacacattgatgttattgtgaatttgcgatgcatttactcaaacttatttgattgggtaggaatggct 117371  T
Q  238 atgaatacgagtttatt 254  Q
    |||||||||||||||||    
T  117372 atgaatacgagtttatt 117388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 27833 - 27965
Alignment:
Q  60 ttctttaattttctattttctaaccaattcatcttacagttgaaatagaagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaacaa 159  Q
    ||||||||| |||||||||||||| | ||||||| ||  || |||| ||| ||||||  |||||||||||||||| ||| ||||||||||||||||||||    
T  27833 ttctttaatattctattttctaactatttcatctcactatttaaattgaaaatattatttttattcttaacaagtttaa-ttacttgtatgtcaaaacaa 27931  T
Q  160 tatttgaattgtatttatacaactattatcaata 193  Q
    ||||||||||||||||||||||||||||| ||||    
T  27932 tatttgaattgtatttatacaactattattaata 27965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 27986 - 28044
Alignment:
Q  194 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttat 253  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||    
T  27986 tgtgatgcatttactcaaa-ttatttgattgggtaggaatggctatgaatgcgagtttat 28044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 28243145 - 28243390
Alignment:
Q  8 gtacaccacttaactcatgtttagcattcttacatagttacatataacacatttctttaattttctattttctaaccaattcatcttacagttgaaatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28243145 gtacaccacttaactcatgtttagcattcttacatagttacatataacacatttctttaattttctattttctaaccaattcatcttacagttgaaatag 28243244  T
Q  108 aagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaacaatatttgaattgtatttatacaactattatcaatatgtgatgcatttac 207  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28243245 aaaatattaaatttattcttaacaagtgtaagttacttgtatg-caaaacaatatttgaattgtatttatacaactattatcaatatatgatgcatttac 28243343  T
Q  208 tcaaacttatttgattgggtagggatggatatgaatacgagtttatt 254  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  28243344 tcaaacttatttgattgggtaggaatggatatgaatacgagtttatt 28243390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 58 - 254
Target Start/End: Original strand, 28325857 - 28326073
Alignment:
Q  58 atttctttaattttctattttctaaccaattcatcttacagttgaaatagaagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaac 157  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||    
T  28325857 atttctttaattttctattttctaaccgattcatcttacagttgaaattggaaatattaattttattcttaacaagtgtaagttacttgtatgtcaaaac 28325956  T
Q  158 aatatttgaattgtatttatacaac--------------------tattatcaatatgtgatgcatttactcaaacttatttgattgggtagggatggat 237  Q
    ||||||||||||||||| |||||||                    |||| | ||| || |||||||||||||||||||||||||||||||||| |||| |    
T  28325957 aatatttgaattgtattcatacaacagttatcaacacattgatgttattgtgaatttgcgatgcatttactcaaacttatttgattgggtaggaatggct 28326056  T
Q  238 atgaatacgagtttatt 254  Q
    |||||||||||||||||    
T  28326057 atgaatacgagtttatt 28326073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 28227335 - 28227467
Alignment:
Q  60 ttctttaattttctattttctaaccaattcatcttacagttgaaatagaagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaacaa 159  Q
    ||||||||| |||||||||||||| | ||||||| ||  || |||| ||| ||||||  |||||||||||||||| ||| ||||||||||||||||||||    
T  28227335 ttctttaatattctattttctaactatttcatctcactatttaaattgaaaatattatttttattcttaacaagtttaa-ttacttgtatgtcaaaacaa 28227433  T
Q  160 tatttgaattgtatttatacaactattatcaata 193  Q
    ||||||||||||||||||||||||||||| ||||    
T  28227434 tatttgaattgtatttatacaactattattaata 28227467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 28181497 - 28181626
Alignment:
Q  58 atttctttaattttctattttctaaccaattcatcttacagttgaaatagaagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaac 157  Q
    ||||||| ||| |||||||||| |||   || |||||| |||||||||||   ||||||| ||||||||||||||||||||| ||||||||||||||| |    
T  28181497 atttcttgaatgttctattttcgaactgttttatcttatagttgaaataggtaatattaattttattcttaacaagtgtaaggtacttgtatgtcaaatc 28181596  T
Q  158 aatatttgaattgtatttatacaactattat 188  Q
    ||||||||||||||| |||||||||||||||    
T  28181597 aatatttgaattgta-ttatacaactattat 28181626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 254
Target Start/End: Complemental strand, 28297533 - 28297327
Alignment:
Q  60 ttctttaattttctattttctaaccaattcatcttacagttgaaatagaagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaacaa 159  Q
    ||||| ||| |||||||||| ||||  |||||| ||  ||| |||||||| ||||||  | ||||||||||||||| |||||| || |||||||||||||    
T  28297533 ttcttaaatattctattttccaaccgtttcatcatattgtttaaatagaaaatattatttctattcttaacaagtgaaagttattt-tatgtcaaaacaa 28297435  T
Q  160 tatttgaattgtatttatacaac-------------tattatcaatatgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacg 246  Q
    ||||||| ||||||| |||||||             |||| |  || |||||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  28297434 tatttgatttgtattcatacaaccatacatggatcttattgtatatttgtgatgcatttactcaaacttatttgattggataggaatggatatgaatatg 28297335  T
Q  247 agtttatt 254  Q
    ||||||||    
T  28297334 agtttatt 28297327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 254
Target Start/End: Original strand, 28514540 - 28514746
Alignment:
Q  60 ttctttaattttctattttctaaccaattcatcttacagttgaaatagaagatattaaatttattcttaacaagtgtaagttacttgtatgtcaaaacaa 159  Q
    ||||| ||| |||||||||| ||||  |||||| ||  ||| |||||||| ||||||  | ||||||||||||||| |||||| || |||||||||||||    
T  28514540 ttcttaaatattctattttccaaccgtttcatcatattgtttaaatagaaaatattatttctattcttaacaagtgaaagttattt-tatgtcaaaacaa 28514638  T
Q  160 tatttgaattgtatttatacaac-------------tattatcaatatgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacg 246  Q
    ||||||| ||||||| |||||||             |||| |  || |||||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  28514639 tatttgatttgtattcatacaaccatacatggatcttattgtatatttgtgatgcatttactcaaacttatttgattggataggaatggatatgaatatg 28514738  T
Q  247 agtttatt 254  Q
    ||||||||    
T  28514739 agtttatt 28514746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 28185755 - 28185846
Alignment:
Q  61 tctttaattttctattttctaaccaattcatcttacagttgaaatagaagatattaaatttattcttaacaagtgtaagttacttgtatgtc 152  Q
    |||||||| ||||||| ||| ||   |||||||||| ||| |||||||| |||||   ||||||||||||||||||||||||||||||||||    
T  28185755 tctttaatattctattatcttactgtttcatcttacggtttaaatagaatatattctttttattcttaacaagtgtaagttacttgtatgtc 28185846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 28227488 - 28227546
Alignment:
Q  194 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttat 253  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||    
T  28227488 tgtgatgcatttactcaaa-ttatttgattgggtaggaatggctatgaatgcgagtttat 28227546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 28181665 - 28181711
Alignment:
Q  207 ctcaaacttatttgattgggtagggatggatatgaatacgagtttat 253  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  28181665 ctcaaacttatttgattgggtaggaatggatatgaatatgagtttat 28181711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 28185928 - 28185988
Alignment:
Q  194 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttatt 254  Q
    ||||||||| ||| |||||||||||| |||||||||| |||| |||||| |||||||||||    
T  28185928 tgtgatgcacttaatcaaacttattttattgggtaggaatggctatgaacacgagtttatt 28185988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 28185869 - 28185907
Alignment:
Q  155 aacaatatttgaattgtatttatacaactattatcaata 193  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  28185869 aacaatatttgaattgtatttatacaactattattaata 28185907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 28150442 - 28150494
Alignment:
Q  202 atttactcaaacttatttgattgggtagggatggatatgaatacgagtttatt 254  Q
    |||||||||||||||| | |||||| ||| |||||||||||| ||||||||||    
T  28150442 atttactcaaacttatcttattgggcaggaatggatatgaattcgagtttatt 28150494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 28098082 - 28098030
Alignment:
Q  202 atttactcaaacttatttgattgggtagggatggatatgaatacgagtttatt 254  Q
    |||||||||||||||| | |||||  ||| |||||||||||| ||||||||||    
T  28098082 atttactcaaacttatcttattggccaggaatggatatgaattcgagtttatt 28098030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 58011 - 57963
Alignment:
Q  145 tgtatgtcaaaacaatatttgaattgtatttatacaactattatcaata 193  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  58011 tgtaagtcaaaacaatatttgaattgtatttatacaactattattaata 57963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 57940 - 57881
Alignment:
Q  196 tgatgcatttactcaaacttatttgatt-gggtagggatggatatgaatacgagtttatt 254  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||    
T  57940 tgatgcatttactcaaacttatttcatttgggtaggaatggatatgaatgcgagtttatt 57881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 5090600 - 5090540
Alignment:
Q  194 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttatt 254  Q
    ||||||||||||| ||||| |||| ||||| | ||||  ||||||||||||||||||||||    
T  5090600 tgtgatgcatttattcaaatttatctgatttgataggactggatatgaatacgagtttatt 5090540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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