View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7930_high_4 (Length: 399)
Name: NF7930_high_4
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7930_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 218 - 380
Target Start/End: Complemental strand, 12874375 - 12874213
Alignment:
| Q |
218 |
gatacaaagttttcacactacatgttcttttcttcaaattgatttaagtgtctaacgttcattcccttaacttagctagggttaactaaggtctctcaaa |
317 |
Q |
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| T |
12874375 |
gatacaaagttttcacactacatgttcttttcttcaaattgatttaagtgtctaatgttcattcccttaactcagctatggttaactcaggtctctcaaa |
12874276 |
T |
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| Q |
318 |
atcacctatatttatggaaaagaaaagaaagtcgatcgaaaattgcttacaacctgacggttg |
380 |
Q |
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| T |
12874275 |
atcgcctatatttatggaaaagaaaagaaagtcgatcgggaattgcttacaacctgacggttg |
12874213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 12874586 - 12874479
Alignment:
| Q |
5 |
atgaacctggactagaaaacatctacatacgtaattattagttcccattatcatgcttcatgcttattcctttattaatttctcgatttcataattcaat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| |
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| T |
12874586 |
atgaacctggactagaaaacatctacatacgtaattattagttctcattatcatgctttatgcttatttctttattagtttctcgatttcataattcaat |
12874487 |
T |
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| Q |
105 |
tatcacat |
112 |
Q |
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| T |
12874486 |
tatcacat |
12874479 |
T |
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