View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7930_high_6 (Length: 340)
Name: NF7930_high_6
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7930_high_6 |
 | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 70 - 323
Target Start/End: Original strand, 20281384 - 20281637
Alignment:
| Q |
70 |
aagtgcaatgagttttgagttcgttttctctgctctgagtgaccaaaaccttcaagccaccaataaaccacctgatccttacaagccatcttccccaaag |
169 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20281384 |
aagtgcaatgagttctgagttcgttttctctgctctgagtgaccaaaaccttcaagccaccaataaaccacccgatccttacaagccatcttccccaaag |
20281483 |
T |
|
| Q |
170 |
atctctttccgagacaaactcctaggaccatctcaagagccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgaga |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20281484 |
atctctttccgagacaaactcctaggaccatctcaagaaccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgaga |
20281583 |
T |
|
| Q |
270 |
atggtaaccgactccttcctaaagtttaccttgaaccatctgtcttccaagaat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20281584 |
atggtaaccgactccttcctaaagtttaccttgaaccatctgtcttccaagaat |
20281637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 50448514 - 50448559
Alignment:
| Q |
162 |
ccccaaagatctctttccgagacaaactcctaggaccatctcaaga |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||| | ||||| |||||||| |
|
|
| T |
50448514 |
ccccaaagatctctttccgtgacaaactcttgggaccctctcaaga |
50448559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 77 - 319
Target Start/End: Complemental strand, 23136190 - 23135948
Alignment:
| Q |
77 |
atgagttttgagttcgttttctctgctctgagtgaccaaaaccttcaagccaccaataaaccacctgatccttacaagccatcttccccaaagatctctt |
176 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23136190 |
atgagttctgagttcgttttctctgctctgagtgaccaaaaccttcaagccaccaataaaccacccgatccttacaagccatcttccccaaagatctctt |
23136091 |
T |
|
| Q |
177 |
tccgagacaaactcctaggaccatctcaagagccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgagaatggtaa |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23136090 |
tccgagacaaactcctaggaccatctcaagaaccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgagaatggtaa |
23135991 |
T |
|
| Q |
277 |
ccgactccttcctaaagtttaccttgaaccatctgtcttccaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23135990 |
ccgactccttcctaaagtttaccttgaaccatctgtcttccaa |
23135948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 71 - 319
Target Start/End: Original strand, 11893684 - 11893932
Alignment:
| Q |
71 |
agtgcaatgagttttgagttcgttttctctgctctgagtgaccaaaaccttcaagccaccaataaaccacctgatccttacaagccatcttccccaaaga |
170 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11893684 |
agtgcaatgagttctgagttcgttttctctgctctgtgtgaccacaaccttcaagccaccaataaaccacacaatcctcacaagccatcttccccaaaga |
11893783 |
T |
|
| Q |
171 |
tctctttccgagacaaactcctaggaccatctcaagagccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgagaa |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11893784 |
tctctttccgagacaaactcctaggaccatctcaagaaccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgagaa |
11893883 |
T |
|
| Q |
271 |
tggtaaccgactccttcctaaagtttaccttgaaccatctgtcttccaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11893884 |
tggtaaccgactccttcctaaagtttaccttgaaccatctgtcttccaa |
11893932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 323
Target Start/End: Complemental strand, 14657288 - 14657036
Alignment:
| Q |
71 |
agtgcaatgagttttgagttcgttttctctgctctgagtgaccaaaaccttcaagccaccaataaaccacctgatccttacaagccatcttccccaaaga |
170 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| | |||||||||| |
|
|
| T |
14657288 |
agtgtaatgagctttgagttcgttttctctgctctgagtgaccacaaccttcaagccaccaaaaaaccacccgatccacacaagccaccatccccaaaga |
14657189 |
T |
|
| Q |
171 |
tctctttccgagacaaactcctaggaccatctcaagagccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgagaa |
270 |
Q |
| |
|
||| |||||| ||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
14657188 |
tctttttccgtgacaaactcctaggaccctctcaagaaccaatgttccgtgaaaaggaagacatgatcgagaaaaatcttgttcgtattgaacacgagaa |
14657089 |
T |
|
| Q |
271 |
tggtaaccgactccttcctaaagtttaccttgaaccatctgtcttccaagaat |
323 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
14657088 |
tggtaaccgactccttccaaaggtttaccttgaaccatctgtcttccaagaat |
14657036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 322
Target Start/End: Complemental strand, 35148844 - 35148596
Alignment:
| Q |
74 |
gcaatgagttttgagttcgttttctctgctctgagtgaccaaaaccttcaagccaccaataaaccacctgatccttacaagccat---cttccccaaaga |
170 |
Q |
| |
|
|||||||| | |||||| ||||||||||||| ||||||| ||||||||||||||||| || |||||||| || ||||||| |||||||||||| |
|
|
| T |
35148844 |
gcaatgagctctgagtttgttttctctgctcaaggtgaccacaaccttcaagccaccaaaaagccacctgaccc---caagccacatccttccccaaaga |
35148748 |
T |
|
| Q |
171 |
tctctttccgagacaaactcctaggaccatctcaagagccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgagaa |
270 |
Q |
| |
|
| ||||| || || |||||||| ||||| || ||||| | | | |||||||| |||||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
35148747 |
tttcttttcgtgataaactccttggaccttcacaagaaacctttattcgtgaaaaagaagacatgatcgagaaaaagcttttccgcattgaacatgagaa |
35148648 |
T |
|
| Q |
271 |
tggtaaccgactccttcctaaagtttaccttgaaccatctgtcttccaagaa |
322 |
Q |
| |
|
|||||||||||| | ||||| || || | |||||||| |||||||||||| |
|
|
| T |
35148647 |
tggtaaccgacttttacctaaggtgcacttggaaccatcagtcttccaagaa |
35148596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 22593564 - 22593624
Alignment:
| Q |
218 |
cgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattgaacatgagaatggtaacc |
278 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
22593564 |
cgtgaaaaacaagacatgattgagaaaaagcttgttcgcatcgaacatgaaaatggaaacc |
22593624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 1026605 - 1026716
Alignment:
| Q |
162 |
ccccaaagatctctttccgagacaaactcctaggaccatctcaagagccaatgctacgtgaaaaggaagacatgatcgagaaaaatcttgttcgcattga |
261 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || || ||||| | | | || ||||| || ||||||||||| |||| ||||| || || || |
|
|
| T |
1026605 |
ccccaaagatctctttccgcgacaaactcctaggcccctcccaagaaaccctaatccgagaaaaagaggacatgatcgaacaaaagcttgtccgtatcga |
1026704 |
T |
|
| Q |
262 |
acatgagaatgg |
273 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1026705 |
acatgagaatgg |
1026716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 5620 - 5699
Alignment:
| Q |
227 |
gaagacatgatcgagaaaaatcttgttcgcattgaacatgagaatggtaaccgactccttcctaaagtttaccttgaacc |
306 |
Q |
| |
|
||||||||||| |||| || ||||| || ||||||||||||||||| ||||| ||||| || ||||| || |||||||| |
|
|
| T |
5620 |
gaagacatgataaagaacaaacttgtccgtattgaacatgagaatggcaaccgtctcctaccaaaagtctatcttgaacc |
5699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University