View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7930_high_8 (Length: 315)
Name: NF7930_high_8
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7930_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 47456063 - 47456366
Alignment:
| Q |
1 |
ttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttgccaaccaagttaaatagatttaaataattg |
100 |
Q |
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| T |
47456063 |
ttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttgccaaccaagttaaatagatttaaataattg |
47456162 |
T |
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| Q |
101 |
tcaaggacattgctgctatttgcatatttctacttttcatcaaatagattattttttgttcaatttgtttgtgtttaatcataagggtaaatttgttaat |
200 |
Q |
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| T |
47456163 |
tcaaggacattgctgctatttgcatatttctacttttcatcaaatagattattttttgttcaatttgtttgtgtttaatcataagggtaaatttgttaat |
47456262 |
T |
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| Q |
201 |
gttaagagagaataatattagaaagtgaatgatgtccactgcattcaataaaaagtatgcaactgagtagagcctaagacttaaccaggtttttagttct |
300 |
Q |
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| T |
47456263 |
gttaagagagaataatattagaaagtgaatgatgtccattgcattcaataaaaagtatgcaactgagtagagcctaagacttaaccaggtttttagttct |
47456362 |
T |
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| Q |
301 |
tcat |
304 |
Q |
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|||| |
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| T |
47456363 |
tcat |
47456366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47461857 - 47461926
Alignment:
| Q |
1 |
ttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
70 |
Q |
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|||||||||||||| |||||||||||||||| |||| |||| ||||||||| ||| ||||||||||||| |
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| T |
47461857 |
ttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttg |
47461926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47468802 - 47468871
Alignment:
| Q |
1 |
ttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
70 |
Q |
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| T |
47468802 |
ttgtttgcaggtgcaaatttgagttttgctatgcgtgtggtgcaggatggacatcttctcatggtggttg |
47468871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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