View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7930_low_11 (Length: 299)
Name: NF7930_low_11
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7930_low_11 |
 | |
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| [»] chr1 (4 HSPs) |
| |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (7 HSPs) |
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| [»] chr2 (6 HSPs) |
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| [»] scaffold0214 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 20281900 - 20281614
Alignment:
| Q |
13 |
tttggtgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| | |
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|
| T |
20281900 |
tttggtgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaatattaaccaaggacctcccgtgatgactttctctttgttt |
20281801 |
T |
|
| Q |
113 |
gcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatgg |
212 |
Q |
| |
|
|| |||||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20281800 |
gccgcttgatcaaatttcaccatgtagaaaccgttatcgttgtccatgatttcgaaacccccttgtggtttccatgttcgttgtagcctttctttcatgg |
20281701 |
T |
|
| Q |
213 |
tatggtagccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttggaagacagatggttcaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20281700 |
tatggtagccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttggaagacagatggttcaa |
20281614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 30820357 - 30820195
Alignment:
| Q |
13 |
tttggtgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtct |
112 |
Q |
| |
|
||||| |||||| ||||||||||| |||||||| |||| ||| | | ||| ||||| || ||||||||||| || || |||||||||||| || || |
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|
| T |
30820357 |
tttggcgtttggtgatgcaaattccggtgaccaatgtgagacatctaagcaatgatcgaaaattaaccagggaccgccatagatgactttctccttatca |
30820258 |
T |
|
| Q |
113 |
gcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaaccccct |
175 |
Q |
| |
|
|| |||||||||||||| || | ||||| || || || || ||||||||||||||||||||| |
|
|
| T |
30820257 |
gccacttgatcaaatttctccatatagaaaccattatcattttccatgatttcaaaaccccct |
30820195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 50448829 - 50448720
Alignment:
| Q |
122 |
tcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagc |
221 |
Q |
| |
|
|||||||||||| |||| || || ||||||||||||||||||||||| || ||||| || ||||| ||| ||| || | ||| ||||||| ||||| | |
|
|
| T |
50448829 |
tcaaatttcaccatgtaaaatccattgtcgttgtccatgatttcaaaccctccttgaggcttccagattctttgaagacgatctctcatggtgtggtatc |
50448730 |
T |
|
| Q |
222 |
cgaggttttt |
231 |
Q |
| |
|
|||| ||||| |
|
|
| T |
50448729 |
cgagattttt |
50448720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 5196219 - 5196334
Alignment:
| Q |
62 |
cagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatga |
161 |
Q |
| |
|
||||||| ||| || ||||| || || || || |||||||| || || || || |||||||||||||||||| | ||||| ||||||| ||| ||||||| |
|
|
| T |
5196219 |
cagtgataaaaaatcaaccaaggaccaccagtaatgactttttccttatcagctgcttgatcaaatttcaccatatagaaaccgttgttgttatccatga |
5196318 |
T |
|
| Q |
162 |
tttcaaaacccccttg |
177 |
Q |
| |
|
| ||||| || ||||| |
|
|
| T |
5196319 |
tatcaaaccctccttg |
5196334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 23135681 - 23135967
Alignment:
| Q |
13 |
tttggtgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| | |
|
|
| T |
23135681 |
tttggtgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaatattaaccaaggacctcccgtgatgactttctctttgttt |
23135780 |
T |
|
| Q |
113 |
gcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatgg |
212 |
Q |
| |
|
|| |||||||||||||||||| ||||||| ||||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23135781 |
gccgcttgatcaaatttcaccatgtagaaaccgttattgttgtccatgatttcgaaactcccttgtggtttccatgttcgttgtagcctttctttcatgg |
23135880 |
T |
|
| Q |
213 |
tatggtagccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttggaagacagatggttcaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23135881 |
tatggtagccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataatttttggaagacagatggttcaa |
23135967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 26712187 - 26712443
Alignment:
| Q |
26 |
gatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaa |
125 |
Q |
| |
|
||||||||||| | ||||||||||||||||| | ||| |||||||| || | |||||| || || |||| |||||||||||||||||| ||||||||| |
|
|
| T |
26712187 |
gatgcaaattccgaagaccagtgtgtgactgccaagcaatgatcaaaaatcatccagggaccgccggtgacgactttctctttgtctgcttcttgatcaa |
26712286 |
T |
|
| Q |
126 |
atttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagccgag |
225 |
Q |
| |
|
|||| ||| |||||||||| ||||| || ||||| |||||||| || | |||| | ||||| ||| |||||||| ||||||||||| | ||| ||||| |
|
|
| T |
26712287 |
atttgaccatgtagaagccattgtcattatccataatttcaaagccgctttgtagcttccaaattctttgtagccggtctttcatggtgttgtatccgag |
26712386 |
T |
|
| Q |
226 |
gtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttg |
282 |
Q |
| |
|
| | ||||| ||||| |||||| | | ||| || |||||||| ||||| |||||||| |
|
|
| T |
26712387 |
ggtcttccctagcaatttgacagccaaagcatctttccatggtgtgcacaattcttg |
26712443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 11894199 - 11893913
Alignment:
| Q |
13 |
tttggtgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtct |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| | |
|
|
| T |
11894199 |
tttggagtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaatattaaccaaggacctcccgtgatgactttctctttgtat |
11894100 |
T |
|
| Q |
113 |
gcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatgg |
212 |
Q |
| |
|
|| |||||||||||||||||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894099 |
gccgcttgatcaaatttcaccatgtagaaaccgttatagttgtccatgatttcgaaacccccttgtggtttccatgttcgttgtagcctttctttcatgg |
11894000 |
T |
|
| Q |
213 |
tatggtagccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttggaagacagatggttcaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11893999 |
tatggtagccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattattggaagacagatggttcaa |
11893913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 8310800 - 8311047
Alignment:
| Q |
20 |
tttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagctt |
119 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| || || || || |||||| | |||||||| ||||||| || ||||||| |||||||| |
|
|
| T |
8310800 |
tttggagatgcaaattctggcattcagtgtgtgactgcaagacaatggtcgaatattaactaagggcctccggtgatgatcttttctttgtatgcagctt |
8310899 |
T |
|
| Q |
120 |
gatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggta |
219 |
Q |
| |
|
||| ||||||||| | ||||| ||||| | ||||||||||||||||||||| || || | | |||| ||| ||||| | || |||| || ||||| |
|
|
| T |
8310900 |
catcgaatttcaccatatagaatccgttattgttgtccatgatttcaaaacctccctgggttctccaagttttttgtaatcgctccctcattgtgtggta |
8310999 |
T |
|
| Q |
220 |
gccgaggtttttccccagcaacttgacaacaatagcgtccttccatgg |
267 |
Q |
| |
|
|| |||||||||||| |||| |||||| ||||| || ||||||||||| |
|
|
| T |
8311000 |
gctgaggtttttccctagcagcttgacgacaattgcatccttccatgg |
8311047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 273
Target Start/End: Original strand, 3662772 - 3663019
Alignment:
| Q |
26 |
gatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaa |
125 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || | || || || || || | ||| || ||||| |||||||||||||| || ||||| ||||||| | |
|
|
| T |
3662772 |
gatgcaaattctggtgaccagtgggtgacagccaaacaatggtcgaaaatcatccaaggtcctccggtgatgactttctccttatctgcttcttgatcga |
3662871 |
T |
|
| Q |
126 |
atttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagccgag |
225 |
Q |
| |
|
|||| ||| | || ||||| ||||| || ||||||||||||||||| | ||| | ||||| |||| |||||||| || |||||||||| ||||||||| |
|
|
| T |
3662872 |
atttgaccatataaaagccattgtcattatccatgatttcaaaaccactttgaagcttccaagttctttgtagccgctccttcatggtattgtagccgag |
3662971 |
T |
|
| Q |
226 |
gtttttccccagcaacttgacaacaatagcgtccttccatggcgtgca |
273 |
Q |
| |
|
| | ||||| ||||| ||||| || | || ||||||||||| ||||| |
|
|
| T |
3662972 |
gctcttccctagcaatttgaccaccaacgcatccttccatggggtgca |
3663019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 15479796 - 15480061
Alignment:
| Q |
20 |
tttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagctt |
119 |
Q |
| |
|
|||||||| ||||| || | ||||| |||||||||||||| || || || | |||||||| || |||||||| | ||||||||||||||||| |||| |
|
|
| T |
15479796 |
tttggagaggcaaactcgagggaccaatgtgtgactgcaagacaatggtcgtaaattaaccaaggacctcccgtaacaactttctctttgtctgctgctt |
15479895 |
T |
|
| Q |
120 |
gatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggta |
219 |
Q |
| |
|
||||||| |||||| | |||||| | |||||||| ||||||||||| || || ||||| ||||||| || ||| |||| ||| |||||| || ||| |
|
|
| T |
15479896 |
gatcaaacttcaccatatagaagtcattgtcgttatccatgatttcgaatcctccttggagtttccaaattttttgcagccgatctctcatggaattgta |
15479995 |
T |
|
| Q |
220 |
gccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttggaa |
285 |
Q |
| |
|
|| ||||| || |||| || |||||| || | ||||| |||||||| ||||||| ||| ||||| |
|
|
| T |
15479996 |
tcctaggttcttgcccaacagcttgaccacgagggcgtctttccatggtgtgcatagttcctggaa |
15480061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 53611553 - 53611626
Alignment:
| Q |
92 |
gtgatgactttctctttgtctgcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttc |
165 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
53611553 |
gtgatgattttttctttatctgcagcttgatcaaatttaaccatgtagaagccattgtcgttgtccataatttc |
53611626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 38650380 - 38650475
Alignment:
| Q |
92 |
gtgatgactttctctttgtctgcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccat |
187 |
Q |
| |
|
||||||||||| || || || || |||||||| ||||||||| ||||||| || |||||||| |||||||||||||| || |||||| || ||||| |
|
|
| T |
38650380 |
gtgatgactttttccttatcagctgcttgatcgaatttcaccatgtagaatccattgtcgttatccatgatttcaaaccctccttgtagtctccat |
38650475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 11892838 - 11892951
Alignment:
| Q |
61 |
gcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatg |
160 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |||||| ||| || || || | |||||||||||||| ||| |||| || ||||| || ||||||||| |
|
|
| T |
11892838 |
gcagtgatcgaagattaaccaaggccctccactgatgattttttccttatcaactgcttgatcaaattttaccatgtaaaatccgttatcattgtccatg |
11892937 |
T |
|
| Q |
161 |
atttcaaaaccccc |
174 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
11892938 |
atttcgaagccccc |
11892951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 23 - 299
Target Start/End: Original strand, 14656783 - 14657059
Alignment:
| Q |
23 |
ggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgat |
122 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14656783 |
ggagatgcaaattcaggcgaccagtgggtgactgtgaggcagtgatcaaagattaaccaagggcctcccgtgatgactttttctttgtctgcagcttgat |
14656882 |
T |
|
| Q |
123 |
caaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagcc |
222 |
Q |
| |
|
||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
14656883 |
caaatttcaccatgtagaaaccgttatcattgtccatgatttcaaaacccccttgtggtctccatgttcgttgtagcctttctctcatggtgtggtagcc |
14656982 |
T |
|
| Q |
223 |
gaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttggaagacagatggttcaa |
299 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14656983 |
gagatttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttggaagacagatggttcaa |
14657059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 1027023 - 1026767
Alignment:
| Q |
20 |
tttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagctt |
119 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||| || || || || || |||||||| |||||||| |||||||| || |||||||||||||||| |
|
|
| T |
1027023 |
tttggagatgcaaattatggcgtccagtgtgtgactgcgagacaatggtcgaatattaaccaagggcctccggtgatgaccttttctttgtctgcagctt |
1026924 |
T |
|
| Q |
120 |
gatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggta |
219 |
Q |
| |
|
||| ||||||||| | ||||| ||||| || |||||||||||||||||||| ||||| | | |||| ||| ||||| | ||| |||| | ||||| |
|
|
| T |
1026923 |
catcgaatttcaccatatagaatccgttatcattgtccatgatttcaaaacctccttgggttctccaagttttttgtaatcgttccctcatagcgtggta |
1026824 |
T |
|
| Q |
220 |
gccgaggtttttccccagcaacttgacaac-aatagcgtccttccatggcgtgcata |
275 |
Q |
| |
|
||||||||||||||| |||| |||||| || ||| || |||||||||| ||| |||| |
|
|
| T |
1026823 |
gccgaggtttttccctagcagcttgacgacaaattgcatccttccatgtcgtacata |
1026767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 35138354 - 35138592
Alignment:
| Q |
20 |
tttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagctt |
119 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| ||||| || |||||||||||||||||||| |||||||| || |||||||| ||||| || || |||| |
|
|
| T |
35138354 |
tttggagaagcaaattcaggagtccagtgtgctactgcgagacagtgatcaaagattaaccacgggcctccagttatgactttttctttatccgctgctt |
35138453 |
T |
|
| Q |
120 |
gatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggta |
219 |
Q |
| |
|
||||||||||||| || | || || |||||||||||||||||||| || || ||||| ||| |||||||| |||||| | ||| ||||||| ||||| |
|
|
| T |
35138454 |
catcaaatttcaccatgaaaaacccattgtcgttgtccatgatttcgaaccctccttggggtctccatgttttttgtaggcgctctctcatggtgtggta |
35138553 |
T |
|
| Q |
220 |
gccgaggtttttccccagcaacttgacaacaatagcgtc |
258 |
Q |
| |
|
|| | || ||||| |||| ||| |||||||| ||||| |
|
|
| T |
35138554 |
tccaatattcttccctagcagcttaacaacaatggcgtc |
35138592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 39009460 - 39009273
Alignment:
| Q |
86 |
cctcccgtgatgactttctctttgtctgcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttcc |
185 |
Q |
| |
|
||||| |||||||||||||| || ||||| ||||||| ||||| ||| | || ||||| ||||| || ||||||||||||||||| | ||| | |||| |
|
|
| T |
39009460 |
cctccggtgatgactttctccttatctgcttcttgatcgaatttgaccatataaaagccattgtcattatccatgatttcaaaaccactttgaagcttcc |
39009361 |
T |
|
| Q |
186 |
atgttcgttgtagcctttctttcatggtatggtagccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgca |
273 |
Q |
| |
|
| |||| |||||||| || |||||||||| ||| |||||| | ||||| ||||| ||||| || | || ||||||||||| ||||| |
|
|
| T |
39009360 |
aagttctttgtagccgctccttcatggtattgtaaccgaggctcttccctagcaatttgaccaccaacgcatccttccatggggtgca |
39009273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 42406350 - 42406605
Alignment:
| Q |
20 |
tttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagctt |
119 |
Q |
| |
|
|||||||| || || || || ||||| |||||||||||||| || || || | |||||||| || |||||||| | ||||| || |||||||| |||| |
|
|
| T |
42406350 |
tttggagaggcgaactcgggggaccaatgtgtgactgcaagacaatggtcgtaaattaaccaaggacctcccgtaacaactttttccttgtctgctgctt |
42406449 |
T |
|
| Q |
120 |
gatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggta |
219 |
Q |
| |
|
| ||||| |||||| | || || ||||| ||||| ||||||||||| ||||| ||||| ||||||| || ||| |||| ||| |||||||| ||| |
|
|
| T |
42406450 |
ggtcaaacttcaccatataaaacccgttatcgttatccatgatttcgaaacctccttggagtttccaaattttttgcagccggtctcgcatggtattgta |
42406549 |
T |
|
| Q |
220 |
gccgaggtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcata |
275 |
Q |
| |
|
|| ||||| || |||| || ||||||||| | ||||| ||||| || ||||||| |
|
|
| T |
42406550 |
tcctaggttcttacccaacagcttgacaacgagggcgtctttccaaggtgtgcata |
42406605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 174214 - 174114
Alignment:
| Q |
62 |
cagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatga |
161 |
Q |
| |
|
||||| |||||||||| ||| || || || ||||| |||||||| || ||||| |||||||||||||| ||| | |||| ||||| || |||||||||| |
|
|
| T |
174214 |
cagtggtcaaagattagccaaggtcccccagtgataactttctccttatctgcggcttgatcaaattttaccataaagaacccgttatcattgtccatga |
174115 |
T |
|
| Q |
162 |
t |
162 |
Q |
| |
|
| |
|
|
| T |
174114 |
t |
174114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 64 - 285
Target Start/End: Complemental strand, 7810810 - 7810589
Alignment:
| Q |
64 |
gtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatt |
163 |
Q |
| |
|
||||||||| |||||||| || || || ||||||||||| |||||||||||||||||||| ||||||||| |||| || ||||| ||||||||||| ||| |
|
|
| T |
7810810 |
gtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaaaccgttatcgttgtccataatt |
7810711 |
T |
|
| Q |
164 |
tcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagccgaggtttttccccagcaacttgacaacaatagcgtccttcc |
263 |
Q |
| |
|
|||||||| |||||| || ||||||| || | | |||||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7810710 |
tcaaaacctccttgtagtctccatgtctttttcaatcgatctttcattgtgtggtatccaaggtttttccccagcaacttgacaacaatggcgtccttcc |
7810611 |
T |
|
| Q |
264 |
atggcgtgcataattcttggaa |
285 |
Q |
| |
|
|||| || || | ||||||||| |
|
|
| T |
7810610 |
atggtgtacagagttcttggaa |
7810589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 23941970 - 23941892
Alignment:
| Q |
92 |
gtgatgactttctctttgtctgcagcttgatcaaatttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaac |
170 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||||| ||| |||| ||||| |||||||| ||||| ||||| |||| |
|
|
| T |
23941970 |
gtgatgactttctctttatcagcagcttggtcaaatttaaccatgtaaaagccattgtcgttatccataatttcgaaac |
23941892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 282
Target Start/End: Original strand, 7590844 - 7591097
Alignment:
| Q |
29 |
gcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaaatt |
128 |
Q |
| |
|
||||||||||| |||||||| |||||||| | || |||||||| || | |||||| || || |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
7590844 |
gcaaattcaggggaccagtgagtgactgccaaacaatgatcaaaaatcatccagggaccgccggtgacgactttctctttgtctgcttcttgatcaaatt |
7590943 |
T |
|
| Q |
129 |
tcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagccgaggtt |
228 |
Q |
| |
|
| ||| |||||||||| || || || ||||| |||||||| || | ||| | ||||| ||| ||| ||||| ||||||||||| | ||| |||||||| |
|
|
| T |
7590944 |
ttaccatgtagaagccattatcattatccataatttcaaagccgctttgaagcttccagattctttgaagcctgtctttcatggtgttgtacccgaggtt |
7591043 |
T |
|
| Q |
229 |
tttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttg |
282 |
Q |
| |
|
||||| |||| |||||||| | ||| || |||||||| |||||||||||||| |
|
|
| T |
7591044 |
cttccctagcagtttgacaaccaaagcatctttccatggtgtgcataattcttg |
7591097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 46787671 - 46787855
Alignment:
| Q |
29 |
gcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaaatt |
128 |
Q |
| |
|
|||||||| || ||||| || |||||||| | ||||| || ||||||| ||| || ||||| |||||||||||||| ||||| |||||||| || |||| |
|
|
| T |
46787671 |
gcaaattcgggagaccaatgagtgactgccaaacagtggtcgaagattagccaaggccctccagtgatgactttctccttgtccgcagcttggtcgaatt |
46787770 |
T |
|
| Q |
129 |
tcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggt |
213 |
Q |
| |
|
||||| | |||||||| || || ||||||||||| || || ||||| || ||||||||||| ||| || | |||||||||||| |
|
|
| T |
46787771 |
tcaccatatagaagccattatcattgtccatgatatcgaatcccccctggagtttccatgttttttggaggcgttctttcatggt |
46787855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 5966 - 5704
Alignment:
| Q |
26 |
gatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaa |
125 |
Q |
| |
|
||||||||||| |||||||| |||| || || | |||||| ||| | || | ||| || ||||| | ||||||||| || ||||| | || |||||||| |
|
|
| T |
5966 |
gatgcaaattccggtgaccaatgtgaaacagccaagcagtggtcataaatcagccatggacctccagagatgactttttccttgtcaggagattgatcaa |
5867 |
T |
|
| Q |
126 |
atttcaccgtgtagaagccgttgtcgttgtccatgatttcaaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagccgag |
225 |
Q |
| |
|
|||||||| | |||||||| || || || ||||| ||||| ||||| ||||| | ||||| | || |||| ||||||||||||| |||||| || |
|
|
| T |
5866 |
atttcaccatatagaagccattatcattatccataatttcgaaacctccttggagcttccaaactttatggagccggtctttcatggtattgtagcctag |
5767 |
T |
|
| Q |
226 |
gtttttccccagcaacttgacaacaatagcgtccttccatggcgtgcataattcttggaagac |
288 |
Q |
| |
|
||||||||| |||| |||||||||| ||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
5766 |
gtttttccctagcagtttgacaacaagagcatccttccatggagtgcataattcctggaagac |
5704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 27784669 - 27784812
Alignment:
| Q |
32 |
aattcaggtgaccagtgtgtgactgcaaggcagtgatcaaagattaaccaggggcctcccgtgatgactttctctttgtctgcagcttgatcaaatttca |
131 |
Q |
| |
|
||||| ||||||||||| | ||| || | ||||||||| ||||||||||| || ||||| ||||||| ||| || || || || ||||||||| |||| | |
|
|
| T |
27784669 |
aattccggtgaccagtgggagacagccaagcagtgatcgaagattaaccaaggccctccagtgatgattttttccttatcagccgcttgatcatatttta |
27784768 |
T |
|
| Q |
132 |
ccgtgtagaagccgttgtcgttgtccatgatttcaaaaccccct |
175 |
Q |
| |
|
|| |||| || ||||| || |||||||||||||| || |||||| |
|
|
| T |
27784769 |
ccatgtaaaatccgttatcattgtccatgatttcgaagccccct |
27784812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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