View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7930_low_12 (Length: 273)
Name: NF7930_low_12
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7930_low_12 |
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| [»] chr7 (11 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 24726949 - 24727212
Alignment:
| Q |
10 |
tggacatcatctgcagaacatatcagaccattgaaaatcaaagcagcccaagtgaatttgccaccggaaacaatttttcttgtgttctgctggctctcat |
109 |
Q |
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| T |
24726949 |
tggacatcatctgcagaacatatcagaccattgaaaatcgaagcagcccaagtgaatttgccaccggaaacaatttttcttgtgttctgctggctctcat |
24727048 |
T |
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| Q |
110 |
gcctgtctttgtcgttgaagctagatgcaaaacgggaaaaatatttgtattttttatgatgttcccaagcaattagattacaccacttggattttgttgt |
209 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24727049 |
gcctgtctttgtcgttgtagctagatgcaaaacgggaaaaatatttgtatttcttatgatgttcccaagcaattagattataccacttggattttgttgt |
24727148 |
T |
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| Q |
210 |
gtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaa |
273 |
Q |
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| T |
24727149 |
gtttgtgatatgtagctgttcaatttcaagtttgccctttttaaacttaaagtaaaagtccaaa |
24727212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 24826786 - 24827043
Alignment:
| Q |
10 |
tggacatcatctgcagaacatatcagaccattgaaaatcaaagcagcccaagtgaatttgccaccggaaacaatttttcttgtgttctgctggctctcat |
109 |
Q |
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|||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |||||||||| |
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| T |
24826786 |
tggacatcatctgcagaacagatcagatcgttgaaaatcaaagcagcccaagtaaatttgccgcaggaaacaattttgcttgtgttctgttggctctcat |
24826885 |
T |
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| Q |
110 |
gcctgtctttgtcgttgaagctagatgcaaaacgggaaaaatatttgtattttttatgatgttcccaagcaattagattacaccacttggattttgttgt |
209 |
Q |
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| T |
24826886 |
cctcgtcttcgt------atctaggtgcaagacgggaagcatatttgtacattttatgatgctcccaagcaataagattacaccacttggcttttgtcgt |
24826979 |
T |
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| Q |
210 |
gtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaa |
273 |
Q |
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| T |
24826980 |
ttttgtgatatgcagttgtttaatttcaagagtctccttttcaaacttaaagtaaaagtccaaa |
24827043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 24697208 - 24697314
Alignment:
| Q |
167 |
gatgttcccaagcaattagattacaccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaa |
266 |
Q |
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| T |
24697208 |
gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaa |
24697307 |
T |
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| Q |
267 |
gtccaaa |
273 |
Q |
| |
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|| |||| |
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| T |
24697308 |
gttcaaa |
24697314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 24537478 - 24537388
Alignment:
| Q |
167 |
gatgttcccaagcaattagattacaccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaactt |
257 |
Q |
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|||||||||||||||||||||| |||||||| | ||||||||| ||||||||||| | ||||||||||||||||| ||||||| |||||| |
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| T |
24537478 |
gatgttcccaagcaattagattgcaccacttagcttttgttgtttttgtgatatgcaactgttcaatttcaagttcccccttttcaaactt |
24537388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 24854905 - 24855016
Alignment:
| Q |
161 |
ttttatgatgttcccaagcaattagattacaccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttata |
260 |
Q |
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|||||||||||||||||||||||| ||| |||||||| |||| |||| ||||||||||| || |||||||||||||||| || |||| ||||||| | |
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| T |
24854905 |
ttttatgatgttcccaagcaattatattgcaccacttatctttttttgtttttgtgatatgcagttgttcaatttcaagttccccattttgaaacttaaa |
24855004 |
T |
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| Q |
261 |
gtaaaagtccaa |
272 |
Q |
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|||||| ||||| |
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| T |
24855005 |
gtaaaaatccaa |
24855016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 24896155 - 24896256
Alignment:
| Q |
171 |
ttcccaagcaattagattacaccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtcc |
270 |
Q |
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|||||||||||||| ||| |||||||| | ||||||||| ||| ||||||| || |||||||||||||||| || |||| ||||||| ||||||| ||| |
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| T |
24896155 |
ttcccaagcaattatattgcaccacttagcttttgttgtttttatgatatgcagttgttcaatttcaagttccccattttgaaacttaaagtaaaaatcc |
24896254 |
T |
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| Q |
271 |
aa |
272 |
Q |
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|| |
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| T |
24896255 |
aa |
24896256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 24754912 - 24755023
Alignment:
| Q |
160 |
tttttatgatgttcccaagcaattagattacaccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttat |
259 |
Q |
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||||||||||| ||||||||||| | ||| |||||||| | ||||||||| ||||| || | || |||| ||||||| ||| | ||||||| ||| ||| |
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| T |
24754912 |
tttttatgatgctcccaagcaatgacattgcaccacttagcttttgttgtttttgttatctctaactgtgcaatttccagtgtccccttttcaaagttaa |
24755011 |
T |
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| Q |
260 |
agtaaaagtcca |
271 |
Q |
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|||||||||||| |
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| T |
24755012 |
agtaaaagtcca |
24755023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 24854773 - 24854840
Alignment:
| Q |
14 |
catcatctgcagaacatatcagaccattgaaaatcaaagcagcccaagtgaatttgccaccggaaaca |
81 |
Q |
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| T |
24854773 |
catcatcagcacaacagatcagaccgttgaaaatcaaagcagcccaagtgaatgtgcccccagaaaca |
24854840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 24537569 - 24537512
Alignment:
| Q |
13 |
acatcatctgcagaacatatcagaccattgaaaatcaaagcagcccaagtgaatttgc |
70 |
Q |
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||||||||| | ||||| |||||||| |||||||||||||||||| |||||||||||| |
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| T |
24537569 |
acatcatcttccgaacagatcagaccgttgaaaatcaaagcagccaaagtgaatttgc |
24537512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 24697105 - 24697162
Alignment:
| Q |
13 |
acatcatctgcagaacatatcagaccattgaaaatcaaagcagcccaagtgaatttgc |
70 |
Q |
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||||| ||| ||||||| |||| ||||||||||||||||||||| |||||||||||| |
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| T |
24697105 |
acatcgtcttcagaacagatcaagccattgaaaatcaaagcagccgaagtgaatttgc |
24697162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 273
Target Start/End: Complemental strand, 24843077 - 24842964
Alignment:
| Q |
160 |
tttttatgatgttcccaagcaattagattacaccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttat |
259 |
Q |
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||||||||||| ||| ||||||| | ||| |||||| | ||| ||||| || |||||||||| |||| ||||||| ||||| |||||||| |||| | |
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| T |
24843077 |
tttttatgatgctccaaagcaatgaaattgagccactttgctttcgttgttttagtgatatgtaactgtgcaatttccagtttcccctttttgaactcaa |
24842978 |
T |
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| Q |
260 |
agtaaaagtccaaa |
273 |
Q |
| |
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||||||| |||||| |
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| T |
24842977 |
agtaaaattccaaa |
24842964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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