View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7930_low_2 (Length: 637)

Name: NF7930_low_2
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7930_low_2
NF7930_low_2
[»] chr1 (8 HSPs)
chr1 (52-622)||(51806377-51806935)
chr1 (75-195)||(24117065-24117185)
chr1 (131-195)||(18337529-18337593)
chr1 (151-199)||(23528710-23528758)
chr1 (131-194)||(16417368-16417431)
chr1 (230-317)||(42947851-42947938)
chr1 (286-320)||(43034333-43034367)
chr1 (151-195)||(12003187-12003231)
[»] chr4 (9 HSPs)
chr4 (88-194)||(18459672-18459778)
chr4 (88-195)||(10394568-10394675)
chr4 (75-168)||(7452504-7452597)
chr4 (107-203)||(610573-610669)
chr4 (75-172)||(4156844-4156940)
chr4 (270-313)||(37951637-37951680)
chr4 (142-203)||(5884466-5884527)
chr4 (89-170)||(46664331-46664412)
chr4 (139-195)||(24719575-24719631)
[»] scaffold0036 (1 HSPs)
scaffold0036 (75-195)||(37118-37237)
[»] chr2 (5 HSPs)
chr2 (89-199)||(5395613-5395723)
chr2 (89-185)||(8428210-8428306)
chr2 (139-194)||(31023282-31023337)
chr2 (75-135)||(19257479-19257539)
chr2 (7-39)||(44553235-44553267)
[»] scaffold0048 (1 HSPs)
scaffold0048 (75-195)||(61334-61454)
[»] chr7 (5 HSPs)
chr7 (131-202)||(4574563-4574634)
chr7 (168-203)||(4574521-4574556)
chr7 (151-201)||(44944872-44944922)
chr7 (75-192)||(21157725-21157842)
chr7 (131-191)||(26565635-26565695)
[»] chr6 (5 HSPs)
chr6 (136-199)||(4597163-4597226)
chr6 (88-195)||(4841883-4841990)
chr6 (78-188)||(12245174-12245284)
chr6 (167-203)||(1178799-1178835)
chr6 (7-39)||(19750169-19750201)
[»] chr8 (7 HSPs)
chr8 (141-195)||(15761456-15761510)
chr8 (138-203)||(17788320-17788385)
chr8 (112-191)||(26879169-26879250)
chr8 (142-199)||(1018280-1018337)
chr8 (75-136)||(16751932-16751992)
chr8 (150-191)||(32424394-32424435)
chr8 (151-195)||(3094280-3094324)
[»] chr3 (12 HSPs)
chr3 (89-144)||(3041189-3041244)
chr3 (89-136)||(22970725-22970772)
chr3 (131-185)||(28135790-28135844)
chr3 (139-195)||(10872961-10873017)
chr3 (269-316)||(39432734-39432781)
chr3 (153-199)||(17796431-17796477)
chr3 (153-199)||(19104871-19104917)
chr3 (89-129)||(15806482-15806522)
chr3 (139-195)||(15806521-15806577)
chr3 (88-124)||(17796605-17796641)
chr3 (88-124)||(19105045-19105081)
chr3 (89-193)||(26234879-26234983)
[»] chr5 (3 HSPs)
chr5 (90-148)||(15445849-15445907)
chr5 (101-170)||(13350037-13350106)
chr5 (75-136)||(4289918-4289979)
[»] scaffold0182 (1 HSPs)
scaffold0182 (78-136)||(24299-24357)
[»] scaffold0684 (1 HSPs)
scaffold0684 (75-136)||(5562-5623)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 52 - 622
Target Start/End: Original strand, 51806377 - 51806935
Alignment:
Q  52 ttataattataattaactccatacttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||                   ||| ||||||||||||||||||||| |    
T  51806377 ttataattataattaactccatacttcaaaatcccataaaaccctgcaattttg-------------------tgcaactttgatgtgattttactagga 51806457  T
Q  152 ttttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagtaa-gattttgaca----acaatgaatattataaccatgatttgttgtgca 246  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  |  | |    ||| |||||||||||||||||||||||| ||||    
T  51806458 ttttgcctattttgggattctgcaatgaatttgaatcgttgaagatgagtaaagacataaatactggacagtgaatattataaccatgatttgttatgca 51806557  T
Q  247 tgtgcacgtaatcacaatcatttatttgtttatcaacgcttgatattactcactttactctataaagtgaattgatgagtttctcattttagaatagcct 346  Q
    | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51806558 tttgcacgtaatgacaatcatttatttgtttatcaacggttgatattactcactttactctataaagtgaattgatgagtttctcattttagaatagcct 51806657  T
Q  347 tgcttattattattattgtaactaactaaaataagcaaaataaatttattaat---aataagtaatgaaaatcactagaatttcagtcatatacgttgga 443  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  51806658 tgcttattattatt---gtaactaactaaaataagcaaaataaatttattaataataataagtaatgaaaatcactagaatttcagtcatatatgttgga 51806754  T
Q  444 gatagtaaatatgaaagtagggcaatctgttgattgcaatagtacataccttaccccaaagagaatttagagaattctagcatcacaaaagtttaaatgc 543  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51806755 gatggtaaatatgaaagtagggcaatctgttgattgcaatagtacataccttaccccaaagagaatttagagaattctaacatcacaaaagtttaaatgc 51806854  T
Q  544 ctactcataaagc--tatctgctgatggattctgaaaaaagtatttcatcaaaatggtgcatcctaataatgcctactttc 622  Q
    | |||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51806855 cgactcataaagctatatatgctgatggattctgaaaaaagtatttcatcaaaatggtgcatcctaataatgcctactttc 51806935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 24117185 - 24117065
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgc 174  Q
    ||||||||||   ||||||||||| |||||||| || |||||  |||||  ||||||||||||||||||||| || ||||||  | |||| |||||||      
T  24117185 cttcaaaatcatttaaaatcctgcgattttgcacgggtttcaccatttttcgcgactttgatgtgattttacaaggattttgtttgttttgggattctaa 24117086  T
Q  175 aatgaatttgaatcgttgaag 195  Q
     || |||||||||||||||||    
T  24117085 tataaatttgaatcgttgaag 24117065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 18337529 - 18337593
Alignment:
Q  131 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 195  Q
    ||||||| ||||||||||| |||||||||||||| || |||||| ||| |||||| |||||||||    
T  18337529 tttgatgcgattttactaggattttgcctattttggggttctgctatggatttgagtcgttgaag 18337593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 23528758 - 23528710
Alignment:
Q  151 attttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 199  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||||||    
T  23528758 attttgcctattttaggattctactatggatttgagtcgttgaagatga 23528710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 16417431 - 16417368
Alignment:
Q  131 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaa 194  Q
    ||||||| ||||||||||||| |||| || |||| ||||| || ||||||||||||| ||||||    
T  16417431 tttgatgcgattttactagaactttgtctgttttgggattttgaaatgaatttgaatagttgaa 16417368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 42947851 - 42947938
Alignment:
Q  230 ccatgatttgttgtgcatgtgcacgtaatcacaatcatttatttgtttatcaacgcttgatattactcactttactctataaagtgaa 317  Q
    |||||||||||| | ||| ||||  ||||  ||| |||| ||||||||||||||| ||||||||||||  |||||||| |||| ||||    
T  42947851 ccatgatttgttttacatttgcatataatatcaaccattgatttgtttatcaacggttgatattactcgttttactctctaaaatgaa 42947938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 43034367 - 43034333
Alignment:
Q  286 ttgatattactcactttactctataaagtgaattg 320  Q
    |||||||||||||||||||||| ||||||||||||    
T  43034367 ttgatattactcactttactctttaaagtgaattg 43034333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 12003187 - 12003231
Alignment:
Q  151 attttgcctattttaggattctgcaatgaatttgaatcgttgaag 195  Q
    ||||||||| |||| ||||| ||| ||||||||||||||||||||    
T  12003187 attttgcctgttttgggattttgctatgaatttgaatcgttgaag 12003231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 18459672 - 18459778
Alignment:
Q  88 taaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaat 187  Q
    |||||||||||||||||| ||| |||||| |||||||||||| |||||||   ||||||||| |||||||||||||||||||||||| ||| |||||| |    
T  18459672 taaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttactaggattttgcctattttaggattctgctatggatttgagt 18459771  T
Q  188 cgttgaa 194  Q
    |||||||    
T  18459772 cgttgaa 18459778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 10394675 - 10394568
Alignment:
Q  88 taaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaat 187  Q
    ||||||||||| |||||| |||||||| |||||||||||||| ||| |||  ||||||| || || ||||||||||||  ||||| | |||||||| | |    
T  10394675 taaaatcctgcgattttgaatggatttaatgattttgtgcgattttaatgcaattttacaaggatcttgcctattttaaaattctactatgaatttaagt 10394576  T
Q  188 cgttgaag 195  Q
    ||||||||    
T  10394575 cgttgaag 10394568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 7452597 - 7452504
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttagga 168  Q
    |||||||| ||  |||||||||||||||||| ||| |||||| |||||||||||| || || | ||||||| ||| ||||||||||| ||||||    
T  7452597 cttcaaaaccctttaaaatcctgcaattttgtatgtatttcacgattttgtgcgatttagaagcgattttattaggattttgcctatattagga 7452504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 610573 - 610669
Alignment:
Q  107 atggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagtaa 203  Q
    |||||||||| |||||||||||| ||||||| | ||| | ||| |||||| || |||||  |||||||||| ||||| |||||||||| | ||||||    
T  610573 atggatttcacgattttgtgcgattttgatgcggtttcattaggattttgtctgttttaaaattctgcaataaatttcaatcgttgaaaacgagtaa 610669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 4156940 - 4156844
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattct 172  Q
    |||||||||||  ||||||| ||| |||||| ||| ||||||  |||| ||| || ||||||| ||||||||||  ||||||| ||||||||||||||    
T  4156940 cttcaaaatcctttaaaatcttgcgattttgtatgtatttcacaattt-gtgtgattttgatgcgattttactaagattttgcttattttaggattct 4156844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 37951637 - 37951680
Alignment:
Q  270 atttgtttatcaacgcttgatattactcactttactctataaag 313  Q
    ||||||||||||||  |||||||||||||||||||||| |||||    
T  37951637 atttgtttatcaacagttgatattactcactttactctctaaag 37951680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 5884466 - 5884527
Alignment:
Q  142 tttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagtaa 203  Q
    |||||||||||||||||||||||   ||| ||||||| ||||| |||| ||||| |||||||    
T  5884466 tttactagaattttgcctatttttacattttgcaatggatttggatcgatgaaggtgagtaa 5884527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 46664331 - 46664412
Alignment:
Q  89 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggatt 170  Q
    ||||||||  || |||| |||||||| | ||||||||| || ||||||| ||||||||||| ||| ||||| |||| |||||    
T  46664331 aaaatcctttaaatttgtatggattttaggattttgtgggattttgatgcgattttactaggattatgcctgttttgggatt 46664412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 24719631 - 24719575
Alignment:
Q  139 gattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 195  Q
    ||||||||||| ||||  || ||||||||||||||| ||| |||||| |||||||||    
T  24719631 gattttactaggatttcacccattttaggattctgctatggatttgagtcgttgaag 24719575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 37118 - 37237
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgc 174  Q
    |||||||| ||  ||||||| |||| |||||||| ||||||| ||||||||| || ||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  37118 cttcaaaaccctttaaaatcatgca-ttttgcatagatttcacgattttgtgtgattttgatgcgattttactaggattttacctattttaagattctgc 37216  T
Q  175 aatgaatttgaatcgttgaag 195  Q
     ||| |||||| | |||||||    
T  37217 tatggatttgagttgttgaag 37237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 5395613 - 5395723
Alignment:
Q  89 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatc 188  Q
    |||||||||||||||||  || |||||||||||||||| || |||||||   ||||||||  ||||||||||||||  |||||||| ||| |||||| ||    
T  5395613 aaaatcctgcaattttgtttgaatttcatgattttgtgagattttgatgcatttttactaagattttgcctattttgagattctgctatggatttgagtc 5395712  T
Q  189 gttgaagatga 199  Q
     || |||||||    
T  5395713 atttaagatga 5395723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 8428306 - 8428210
Alignment:
Q  89 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttga 185  Q
    |||||||| |||||||| ||| |||||  ||||||||  || ||||||  ||||||||||  ||||||||||||||| |||||| | ||||||||||    
T  8428306 aaaatccttcaattttgtatgaatttcgggattttgtaggattttgatacgattttactaagattttgcctattttaagattctcctatgaatttga 8428210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 31023337 - 31023282
Alignment:
Q  139 gattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaa 194  Q
    ||||||| || ||||||||||||||||||||||| | |||||||||| ||||||||    
T  31023337 gattttaatataattttgcctattttaggattctactatgaatttgagtcgttgaa 31023282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 19257479 - 19257539
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttga 135  Q
    ||||||||| |  ||||||||||| |||||| ||||||||||  ||||||||||| |||||    
T  19257479 cttcaaaattctttaaaatcctgcgattttgaatggatttcacaattttgtgcgattttga 19257539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 44553267 - 44553235
Alignment:
Q  7 agagtgtgttagagagtttgaccatagcattcc 39  Q
    ||||||||||||||||| |||||||||||||||    
T  44553267 agagtgtgttagagagtgtgaccatagcattcc 44553235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 61334 - 61454
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgc 174  Q
    |||||||| ||  |||||||||||  ||||| ||| |||||| | |||||||||| |||||||  ||||||||| |||||||| |||||| |||||||      
T  61334 cttcaaaacccattaaaatcctgcggttttgtatgaatttcacgtttttgtgcgattttgatgcaattttactataattttgcttattttgggattctca 61433  T
Q  175 aatgaatttgaatcgttgaag 195  Q
     ||| ||||||| ||||||||    
T  61434 tatggatttgaaccgttgaag 61454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 4574634 - 4574563
Alignment:
Q  131 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagta 202  Q
    |||||||  |||||| ||| ||||||| |||||| | |||||||||||||||||||||||||||| ||||||    
T  4574634 tttgatgcaattttagtaggattttgcttattttggaattctgcaatgaatttgaatcgttgaaggtgagta 4574563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 4574556 - 4574521
Alignment:
Q  168 attctgcaatgaatttgaatcgttgaagatgagtaa 203  Q
    |||||||||||||||||||||||||||| |||||||    
T  4574556 attctgcaatgaatttgaatcgttgaaggtgagtaa 4574521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 44944872 - 44944922
Alignment:
Q  151 attttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagt 201  Q
    |||||| ||||||||||||||| | ||| |||||||||||||||| |||||    
T  44944872 attttgactattttaggattctactatggatttgaatcgttgaaggtgagt 44944922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 21157725 - 21157842
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgc 174  Q
    |||||||||||  |||||| |||| |||||| ||| |||||| | |||||||| | ||| | | ||||||||||  ||||| | | |||||||||| |||    
T  21157725 cttcaaaatcctttaaaattctgcgattttgtatgaatttcacggttttgtgcaatttttaagcgattttactacgatttttcttgttttaggattttgc 21157824  T
Q  175 aatgaatttgaatcgttg 192  Q
     ||| |||||| ||||||    
T  21157825 tatggatttgagtcgttg 21157842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 26565635 - 26565695
Alignment:
Q  131 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgtt 191  Q
    ||||||| ||||||| ||| || |||| ||||||  |||||||| ||||||||||||||||    
T  26565635 tttgatgcgattttagtaggatcttgcatattttgagattctgctatgaatttgaatcgtt 26565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 4597163 - 4597226
Alignment:
Q  136 tgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 199  Q
    |||| ||||||||| ||||||||||||||   |||||||||||||||||||||||| |||||||    
T  4597163 tgtggttttactaggattttgcctatttttaaattctgcaatgaatttgaatcgttaaagatga 4597226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 4841883 - 4841990
Alignment:
Q  88 taaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaat 187  Q
    ||||||| ||| || ||| ||| || ||| |||||||||||| ||||| | ||||||||||| |||||||||||| | ||||||||| | | |||||| |    
T  4841883 taaaatcatgcgatcttgtatgaatctcacgattttgtgcgattttgaagcgattttactagtattttgcctattatgggattctgctacggatttgagt 4841982  T
Q  188 cgttgaag 195  Q
    ||||||||    
T  4841983 cgttgaag 4841990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 12245284 - 12245174
Alignment:
Q  78 caaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaat 177  Q
    ||||||||  ||||||||| ||||||||||||  ||||| |||||| | ||| |||||||  ||||| |||| |||||  || |||| ||||| ||||||    
T  12245284 caaaatcctgtaaaatccttcaattttgcatgtgtttcacgattttattcgattttgatgctatttttctaggattttatctgttttgggattttgcaat 12245185  T
Q  178 gaatttgaatc 188  Q
    | |||| ||||    
T  12245184 ggatttaaatc 12245174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 1178835 - 1178799
Alignment:
Q  167 gattctgcaatgaatttgaatcgttgaagatgagtaa 203  Q
    |||||||||||| |||||||||||||||| |||||||    
T  1178835 gattctgcaatggatttgaatcgttgaaggtgagtaa 1178799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 19750169 - 19750201
Alignment:
Q  7 agagtgtgttagagagtttgaccatagcattcc 39  Q
    ||||||||||||||||| |||||||||||||||    
T  19750169 agagtgtgttagagagtgtgaccatagcattcc 19750201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 15761456 - 15761510
Alignment:
Q  141 ttttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 195  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||    
T  15761456 ttttactagaattttgcctattttgggattttgctatgaatttgagtcgttgaag 15761510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 17788320 - 17788385
Alignment:
Q  138 tgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagtaa 203  Q
    |||||||||||| |||||||||||||||  |||  |||||||||||||||  |||||| |||||||    
T  17788320 tgattttactaggattttgcctattttaaaatttcgcaatgaatttgaatatttgaaggtgagtaa 17788385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 26879250 - 26879169
Alignment:
Q  112 tttcatgattttgtgcgactttgatgtgattttactagaattttg--cctattttaggattctgcaatgaatttgaatcgtt 191  Q
    ||||| |||||||||| | ||||||| |||||||||||| |||||  | ||||||| |||| |||  |||||||||||||||    
T  26879250 tttcacgattttgtgcaattttgatgcgattttactagagttttgcacgtattttaagattttgctgtgaatttgaatcgtt 26879169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 1018280 - 1018337
Alignment:
Q  142 tttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 199  Q
    |||||||||| |||| ||  ||||| ||| || |||||||||||||||||||||||||    
T  1018280 tttactagaaatttgtctgctttagaattttgtaatgaatttgaatcgttgaagatga 1018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 16751992 - 16751932
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 136  Q
    |||||||||||   |||||||||| |||||| |||||||||| |||||||||||| ||||||    
T  16751992 cttcaaaatccatcaaaatcctgcgattttgaatggatttca-gattttgtgcgattttgat 16751932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 32424435 - 32424394
Alignment:
Q  150 aattttgcctattttaggattctgcaatgaatttgaatcgtt 191  Q
    ||||||| ||||||||||||||| | ||||||||||||||||    
T  32424435 aattttgtctattttaggattctactatgaatttgaatcgtt 32424394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 3094280 - 3094324
Alignment:
Q  151 attttgcctattttaggattctgcaatgaatttgaatcgttgaag 195  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||    
T  3094280 attttgcctattttaggattctactatggatttgagtcgttgaag 3094324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 3041244 - 3041189
Alignment:
Q  89 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgatttt 144  Q
    |||||||||| |||||| |||||||||| |||||||||||| |||||| |||||||    
T  3041244 aaaatcctgcgattttgaatggatttcacgattttgtgcgattttgatatgatttt 3041189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 22970772 - 22970725
Alignment:
Q  89 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 136  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||||    
T  22970772 aaaatcctgcgattttgaatggatttcatgattttgtgcgattttgat 22970725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 28135844 - 28135790
Alignment:
Q  131 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttga 185  Q
    ||||||||||||||||||||||||||||||||| || ||| ||| ||| ||||||    
T  28135844 tttgatgtgattttactagaattttgcctatttgagaattttgctatggatttga 28135790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 10872961 - 10873017
Alignment:
Q  139 gattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 195  Q
    ||||||||||| ||||||||||||||  |||||||| ||| |||||| |||||||||    
T  10872961 gattttactaggattttgcctattttgagattctgctatggatttgagtcgttgaag 10873017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 39432781 - 39432734
Alignment:
Q  269 tatttgtttatcaacgcttgatattactcactttactctataaagtga 316  Q
    ||||| |||||||||| |||||||||||||||||||||| || |||||    
T  39432781 tatttatttatcaacggttgatattactcactttactctctacagtga 39432734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 17796477 - 17796431
Alignment:
Q  153 tttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 199  Q
    |||| ||||||||||||||||| |||||||||| | |||||||||||    
T  17796477 tttgtctattttaggattctgctatgaatttgagttgttgaagatga 17796431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 19104917 - 19104871
Alignment:
Q  153 tttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 199  Q
    |||| ||||||||||||||||| |||||||||| | |||||||||||    
T  19104917 tttgtctattttaggattctgctatgaatttgagttgttgaagatga 19104871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 15806482 - 15806522
Alignment:
Q  89 aaaatcctgcaattttgcatggatttcatgattttgtgcga 129  Q
    |||||||||| |||||| |||||||||| ||||||||||||    
T  15806482 aaaatcctgcgattttgtatggatttcacgattttgtgcga 15806522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 15806521 - 15806577
Alignment:
Q  139 gattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 195  Q
    ||||||||||| ||||||||| |||| ||||||||| ||| |||||| || ||||||    
T  15806521 gattttactaggattttgcctgttttgggattctgctatggatttgagtcattgaag 15806577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 17796641 - 17796605
Alignment:
Q  88 taaaatcctgcaattttgcatggatttcatgattttg 124  Q
    |||||||||||||||||| |||||||||| |||||||    
T  17796641 taaaatcctgcaattttgtatggatttcacgattttg 17796605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 19105081 - 19105045
Alignment:
Q  88 taaaatcctgcaattttgcatggatttcatgattttg 124  Q
    |||||||||||||||||| |||||||||| |||||||    
T  19105081 taaaatcctgcaattttgtatggatttcacgattttg 19105045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 26234983 - 26234879
Alignment:
Q  89 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatc 188  Q
    |||||||||| |||||||||| |||| |  ||||||||||| ||||||   |||||| ||  |||||| |||||||  |||||||| ||| |||| |||     
T  26234983 aaaatcctgcgattttgcatgaattttacaattttgtgcgattttgatacaattttattaagattttgtctatttttagattctgctatggatttaaatt 26234884  T
Q  189 gttga 193  Q
    |||||    
T  26234883 gttga 26234879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 15445907 - 15445849
Alignment:
Q  90 aaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttacta 148  Q
    |||||||| |||||| |||| ||||||||||||||||||| |||||||  |||||||||    
T  15445907 aaatcctgaaattttacatgaatttcatgattttgtgcgattttgatgctattttacta 15445849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 13350037 - 13350106
Alignment:
Q  101 ttttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggatt 170  Q
    ||||||| ||||||||  | ||||||||| |||||||||||||||||||| ||||| || |||| |||||    
T  13350037 ttttgcaaggatttcacaactttgtgcgattttgatgtgattttactagagttttgtctgtttttggatt 13350106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 4289979 - 4289918
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 136  Q
    |||||||||||   |||||||||| |||||| | |||||||| |||||||||||| ||||||    
T  4289979 cttcaaaatccatcaaaatcctgcgattttgaacggatttcacgattttgtgcgattttgat 4289918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 24357 - 24299
Alignment:
Q  78 caaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 136  Q
    ||||||||  ||||||||||  |||||| |||||||||| |||||||||||| ||||||    
T  24357 caaaatccattaaaatcctgtgattttgaatggatttcacgattttgtgcgattttgat 24299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 5562 - 5623
Alignment:
Q  75 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 136  Q
    |||||||||||  ||||||||| |||||||| | |||||| | |||||||||||| ||||||    
T  5562 cttcaaaatcctttaaaatcctacaattttgaacggattttacgattttgtgcgattttgat 5623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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