View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7930_low_4 (Length: 486)
Name: NF7930_low_4
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7930_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 673213 - 673675
Alignment:
| Q |
18 |
gtaatctttgtcacaacgttgctatgcgtgctggtgtcgaggatttacctggtggtgttaaagtatttggtgcttatcttaaccacccttacttttgggg |
117 |
Q |
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| T |
673213 |
gtaatctttgtcacaacgttgctatgcgtgctggtgtcgaggatttacctggtggtgttaaagtatttggtgcttatcttaaccacccttacttttgggg |
673312 |
T |
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| Q |
118 |
tgcaaaaccaataggggaagaacctgttatagggtttgaggagactttacagtctaggatttggaagtttgcatacccttctgctcctggtgggttagat |
217 |
Q |
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| T |
673313 |
tgcaaaaccaataggggaagaacctgttatagggtttgaggagactttacagtctaggatttggaagtttgcatacccttctgctcctggtgggttagat |
673412 |
T |
|
| Q |
218 |
aacgctatgatcaatccattggcttctggggcacctagtttggctacacttggttgttccaagatgcttattactgctgctggaaaggatcatcttctct |
317 |
Q |
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| T |
673413 |
aaccctatgatcaatccattggcttctggggcacctagtttggctacacttggttgttccaggatgcttattactgctgctggaaaggatcaacttctct |
673512 |
T |
|
| Q |
318 |
ttagggacagatcagaaagatattatgaggctgtgaagaagagtggatggaaaggggaagtggaattctttgaagagaaagatgaggatcatgtttatta |
417 |
Q |
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| T |
673513 |
ttagggacagatcagaaagatattttgaggctgtgaagaagagtggatggaaaggggaagtggaattctttgaagagaaagatgaggatcatgtttatta |
673612 |
T |
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| Q |
418 |
catgtatgatcttgaaactgaccaatctaaaagattcattaaagttttggttgatattcttcg |
480 |
Q |
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| T |
673613 |
catgtatgatcttgaaactgaccaatctaaaagattcattaaagttttggttgattttcttcg |
673675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 415
Target Start/End: Complemental strand, 15233799 - 15233733
Alignment:
| Q |
349 |
tgtgaagaagagtggatggaaaggggaagtggaattctttgaagagaaagatgaggatcatgtttat |
415 |
Q |
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| T |
15233799 |
tgtgaagaatagtgggtggaaagggaaattggaattctttgaagagaaagatgagggtcatgtttat |
15233733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 47301860 - 47301937
Alignment:
| Q |
338 |
tattatgaggctgtgaagaagagtggatggaaaggggaagtggaattctttgaagagaaagatgaggatcatgtttat |
415 |
Q |
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| T |
47301860 |
tattatgagcttgtgaagaagagtggttggaaagggaaattggaattgtttgaagaagaagatgaagatcatgtttat |
47301937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 17473733 - 17473799
Alignment:
| Q |
349 |
tgtgaagaagagtggatggaaaggggaagtggaattctttgaagagaaagatgaggatcatgtttat |
415 |
Q |
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||||||||| ||||| ||||| ||| || |||||||||||||||||||||||||| | ||||||||| |
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| T |
17473733 |
tgtgaagaatagtgggtggaatgggaaattggaattctttgaagagaaagatgagaaccatgtttat |
17473799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 17841997 - 17842074
Alignment:
| Q |
338 |
tattatgaggctgtgaagaagagtggatggaaaggggaagtggaattctttgaagagaaagatgaggatcatgtttat |
415 |
Q |
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| T |
17841997 |
tattatgagcttgtgaagaagagtggttggaaagggaaattggaattgtttgaagaagaaaatgaagaccatgtttat |
17842074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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