View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7930_low_5 (Length: 421)

Name: NF7930_low_5
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7930_low_5
NF7930_low_5
[»] chr5 (15 HSPs)
chr5 (18-416)||(10565692-10566090)
chr5 (20-416)||(10581684-10582080)
chr5 (97-404)||(10612411-10612718)
chr5 (183-405)||(10746318-10746541)
chr5 (247-374)||(10739777-10739904)
chr5 (247-374)||(10605483-10605610)
chr5 (315-416)||(10587897-10587998)
chr5 (315-374)||(10762260-10762319)
chr5 (160-376)||(10716250-10716469)
chr5 (315-378)||(7193733-7193796)
chr5 (309-404)||(9827373-9827468)
chr5 (309-404)||(9835742-9835837)
chr5 (315-378)||(10659505-10659568)
chr5 (309-378)||(10651616-10651685)
chr5 (83-159)||(11048127-11048203)
[»] chr6 (6 HSPs)
chr6 (97-416)||(12958746-12959065)
chr6 (97-416)||(12949286-12949606)
chr6 (124-416)||(12907858-12908153)
chr6 (124-416)||(12932947-12933242)
chr6 (97-250)||(18555918-18556071)
chr6 (236-416)||(12900241-12900421)
[»] chr2 (1 HSPs)
chr2 (125-416)||(17922641-17922938)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 10566090 - 10565692
Alignment:
Q  18 gccacatgtgatacaagcttgaccaataagtttcttaacaactgtgcatcaagctgaattgctaattatgagtttgagcacctgaaattcaaatcaagaa 117  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10566090 gccacatgtgatacatgcttggccaataagtttcttaacaactgtgcatcaagctgaattgctaattatgagtttgagcacctgaaattcaaatcaagaa 10565991  T
Q  118 gaaatccattattaccattgtattttgtagtttaggaattttaaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgattta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  10565990 gaaatccattattaccattgtattttgtagtttaggaattttaaatgcaaaatatgataataaaaatcaaatgataactccataaccaaataatgattta 10565891  T
Q  218 gttatgattcgaatacacataaaaatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10565890 gttatgattcgaatacacataaaaatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgatt 10565791  T
Q  318 ctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctcatgatgtccatct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||    
T  10565790 ctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgcaggtggaataagattctcatgatttccatct 10565692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 10582080 - 10581684
Alignment:
Q  20 cacatgtgatacaagcttgaccaataagtttcttaacaactgtgcatcaagctgaattgctaattatgagtttgagcacctgaaattcaaatcaagaaga 119  Q
    |||||||| | ||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  10582080 cacatgtgcttcaagcttgacctataagtttcgtaaaaactgcgcatcaagctgaattgctaattacaagtttgagcacctgaaattcaaatcaaaaaga 10581981  T
Q  120 aatccattattaccattgtattttgtagtttaggaattttaaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgatttagt 219  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  10581980 aatccattattaccattgtattttgaagtttaggaatattaaatgcaaaatatgataataaaaatcaaatgataactccataaccaaataatgatttagt 10581881  T
Q  220 tatgattcgaatacacataaaaatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattct 319  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| || | |||    
T  10581880 tatgattcgaatacacataaaaatatcagtttatctcaccggcaagaaaggcctttctgattatactaagctctatacatacatcctcaatattcagtct 10581781  T
Q  320 ttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctcatgatgtccatct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||||||    
T  10581780 ttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgcagctggaataagattctcaagatttccatct 10581684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 97 - 404
Target Start/End: Complemental strand, 10612718 - 10612411
Alignment:
Q  97 acctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataat 195  Q
    ||||||||||||||||||||||||  |||||||||| ||| ||||||| |||||||||| ||| ||||||| |||| ||||||||||||||||| |        
T  10612718 acctgaaattcaaatcaagaagaaggccattattactattatattttgaagtttaggaaatttgaaatgcacaataagatgataaaaatcaaattag--- 10612622  T
Q  196 tccataaccaaataatgatttagttatgattcgaatacacata--aaaatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctct 293  Q
    ||||||| ||| || ||| ||||||||||||| |||| | |||  ||||| |||| ||||||||||||  |||||||| ||   |||| |  |||| |||    
T  10612621 tccataaacaattattgagttagttatgattcaaataaatatataaaaatgtcaggttatctcaccagtgagaaaggctttatggattgtgttaagttct 10612522  T
Q  294 ctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaa 393  Q
    |||   ||| || |||| || ||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||    
T  10612521 ctagtaacatccacaatattcattctttctttgggtgattccattgaacaaagaagtccaatcctaaaaagtgaaactaagcactcctttaaacttggaa 10612422  T
Q  394 taagattctca 404  Q
    |||||||||||    
T  10612421 taagattctca 10612411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 183 - 405
Target Start/End: Original strand, 10746318 - 10746541
Alignment:
Q  183 atcaaatgataattccataaccaaataatgatttagttatgattcgaatacacata-aaaatatcagtttatctcaccagcaagaaaggcctttctgatt 281  Q
    ||||||| |||||| ||||| ||| |||||| ||||||||||||| ||||  |||| ||||| |  ||||||||||||||||||||||||||||||||||    
T  10746318 atcaaattataattgcataagcaattaatgagttagttatgattcaaataagcatataaaatttatgtttatctcaccagcaagaaaggcctttctgatt 10746417  T
Q  282 atactaagctctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcct 381  Q
    ||  | |||||||||   ||| || || | || ||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||| ||||| |    
T  10746418 atgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactctt 10746517  T
Q  382 ttgaagttggaataagattctcat 405  Q
    ||  ||||||||||||||||||||    
T  10746518 ttacagttggaataagattctcat 10746541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 374
Target Start/End: Original strand, 10739777 - 10739904
Alignment:
Q  247 agtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacat 346  Q
    |||||||||||||||||||||||||||||| |||| |  ||||||||  |   ||| ||  ||| || ||||||||||| ||||| ||||||||||| ||    
T  10739777 agtttatctcaccagcaagaaaggcctttcggattgtgttaagctcttgattaacatccataatattcattctttctttcggtgattccattgaacaaat 10739876  T
Q  347 aagtccaatcctaaaaagtgaaactaag 374  Q
    ||||||||| ||||||||||||||||||    
T  10739877 aagtccaattctaaaaagtgaaactaag 10739904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 374
Target Start/End: Complemental strand, 10605610 - 10605483
Alignment:
Q  247 agtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacat 346  Q
    |||||||||||||||| ||||||||||| | |||| |  |||||||| ||   ||| ||  ||| || ||||||||||| ||||| ||||||||||| ||    
T  10605610 agtttatctcaccagcgagaaaggccttccggattgtgttaagctctttagtaacatccataatattcattctttctttcggtgattccattgaacaaat 10605511  T
Q  347 aagtccaatcctaaaaagtgaaactaag 374  Q
    ||||||||| ||||||||||||||||||    
T  10605510 aagtccaattctaaaaagtgaaactaag 10605483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 416
Target Start/End: Original strand, 10587897 - 10587998
Alignment:
Q  315 attctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctcatgatgtccat 414  Q
    ||||||||||||||||| |||||||||||   |||||||||||| | ||||||||||||||||| ||    || ||||||||||||||||| ||||||||    
T  10587897 attctttcttttggtgattccattgaacaagcaagtccaatccttagaagtgaaactaagcacttctccttagctggaataagattctcattatgtccat 10587996  T
Q  415 ct 416  Q
    ||    
T  10587997 ct 10587998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 374
Target Start/End: Original strand, 10762260 - 10762319
Alignment:
Q  315 attctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaag 374  Q
    ||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  10762260 attctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaactaag 10762319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 376
Target Start/End: Original strand, 10716250 - 10716469
Alignment:
Q  160 aaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgatttagttatgattcgaata---cacataaaaatatcagtttatctc 256  Q
    ||||||| |||| ||||||||| ||||||| |||||||||||| ||| ||  || |||||||| |||| ||||   || ||| ||||   | |||| |||    
T  10716250 aaatgcacaataagatgataaagatcaaattataattccataagcaattatagagttagttattattcaaataaagcatatataaattctactttagctc 10716349  T
Q  257 accagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagtccaatc 356  Q
    |||||  ||||| | ||||||||||||  | |||||||||   ||| ||  ||| || ||||||||| | ||||| ||||||| ||| | ||||||||||    
T  10716350 accagagagaaatgtctttctgattatgttgagctctctagtgacatccataatattcattctttctatcggtgattccattgtacaaacaagtccaatc 10716449  T
Q  357 ctaaaaagtgaaactaagca 376  Q
    || ||||| |||||||||||    
T  10716450 ctgaaaagagaaactaagca 10716469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 7193796 - 7193733
Alignment:
Q  315 attctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcact 378  Q
    ||||||||||||||||| |||| ||||||   |||||||||||||||||||||||||| |||||    
T  7193796 attctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcact 7193733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 9827373 - 9827468
Alignment:
Q  309 atgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctca 404  Q
    ||||| ||||||||||||||||| ||  |||||||   |||||||||||| |||| |||||||||||| | ||||  || ||||||||||||||||    
T  9827373 atgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacagctggaataagattctca 9827468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 9835742 - 9835837
Alignment:
Q  309 atgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctca 404  Q
    ||||| ||||||||||||||||| ||  |||||||   |||||||||||| |||| |||||||||||| | ||||  || ||||||||||||||||    
T  9835742 atgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacagctggaataagattctca 9835837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 10659505 - 10659568
Alignment:
Q  315 attctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcact 378  Q
    ||||||||||||||||| | || ||||||   ||||||||||| ||||||||||||||||||||    
T  10659505 attctttcttttggtgatttcactgaacatgcaagtccaatccgaaaaagtgaaactaagcact 10659568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 10651616 - 10651685
Alignment:
Q  309 atgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcact 378  Q
    ||||| ||||||||||||||||| | || ||||||   |||||||||||| |||||||||||||| ||||    
T  10651616 atgttcattctttcttttggtgatttcactgaacaagcaagtccaatcctgaaaagtgaaactaaacact 10651685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 11048127 - 11048203
Alignment:
Q  83 ttatgagtttgagcacctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt 159  Q
    |||||||| ||| ||||||||||||||||||||| |||     ||||| || ||||||||||||| |||| ||||||    
T  11048127 ttatgagtgtgaacacctgaaattcaaatcaagaggaagcttgttattgcctttgtattttgtaggttagaaatttt 11048203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 97 - 416
Target Start/End: Complemental strand, 12959065 - 12958746
Alignment:
Q  97 acctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataat 195  Q
    |||||||||| |||||||||||     ||||||||||||| |||||| |||||| |||||||| ||||||| |||| |||||||||||| ||||  ||||    
T  12959065 acctgaaattaaaatcaagaaggt---cattattaccattatattttatagtttgggaattttgaaatgcacaataagatgataaaaataaaattctaat 12958969  T
Q  196 tccataaccaaataatgatttagttatgattcgaatacacataaaaatatcag----tttatctcaccagcaagaaaggcctttctgattatactaagct 291  Q
    ||||||||||| |||||| ||||||||||||| |||| |||  || |||| ||    || ||||||||||| |||||| ||||   |||| |  ||||||    
T  12958968 tccataaccaattaatgagttagttatgattcaaataaaca--aacatataagaatattcatctcaccagctagaaagaccttctggattgtggtaagct 12958871  T
Q  292 ctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttgg 391  Q
    |||||   ||| |  |||| || ||||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||| |  ||||||    
T  12958870 ctctagtgacatcgacaatattcattctttcttttggtgattccaatgaacataaaagtccaatcctaaaaagtgaaactaagcactcctctacagttgg 12958771  T
Q  392 aataagattctcatgatgtccatct 416  Q
    ||||||| ||||||||| |||||||    
T  12958770 aataagaatctcatgatttccatct 12958746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 97 - 416
Target Start/End: Complemental strand, 12949606 - 12949286
Alignment:
Q  97 acctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataat 195  Q
    |||||||||| |||||||||||     ||||||||||||| ||||||||||| |||||||||| ||||||| |||| |||||||||||| ||||  ||||    
T  12949606 acctgaaattaaaatcaagaaggt---cattattaccattatattttgtagtctaggaattttgaaatgcacaataagatgataaaaataaaattctaat 12949510  T
Q  196 tccataaccaaataatgatttagttatgattcgaata--cacataaaaatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctct 293  Q
    | ||||| ||| |||||| || |||||||||| ||||  || |||| |||||||||| ||||||||||| |||||| ||||   |||| |  ||||||||    
T  12949509 ttcataagcaattaatgagttggttatgattcaaataagcatataagaatatcagttcatctcaccagctagaaagaccttatggattgtggtaagctct 12949410  T
Q  294 ctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaa-gtgaaactaagcactcctttgaagttgga 392  Q
    |||   ||| || |||| || |||||||| |||| ||| |||| |||||| | ||||||||||||||||| | |||||| ||||||| | |  |||||||    
T  12949409 ctagtgacatccacaatattcattctttcatttgatgattccaatgaacaaaaaagtccaatcctaaaaaggggaaactgagcactcttctatagttgga 12949310  T
Q  393 ataagattctcatgatgtccatct 416  Q
    |||||| ||||||||| |||||||    
T  12949309 ataagaatctcatgatttccatct 12949286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 124 - 416
Target Start/End: Complemental strand, 12908153 - 12907858
Alignment:
Q  124 cattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgatttagttat 222  Q
    ||||||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||| |||   ||||||||||| ||| ||||||  |||||||    
T  12908153 cattattaccattatattttgtagtttgggaattttgaaatacaaaataagatgataaaaataaaactctaattccataagcaattaatgacgtagttat 12908054  T
Q  223 gattcgaatacacataaa--aatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattctt 320  Q
    ||||| |||| | ||| |  |||||||||| ||||||||||| | |||| ||||   |||| |  |||||||||||   ||| |  |||| || ||||||    
T  12908053 gattctaataaagatataggaatatcagttcatctcaccagctaaaaagaccttctggattgtggtaagctctctattgacatctacaatattcattctt 12907954  T
Q  321 tcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctcatgatgtccatct 416  Q
    ||||||| ||| |||| |||||| | ||||||||||||||||||||||  ||||||||||| |  | ||||||||||| ||||||||  |||||||    
T  12907953 tcttttgttgattccaatgaacataaaagtccaatcctaaaaagtgaagttaagcactcctctacatttggaataagaatctcatgaattccatct 12907858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 124 - 416
Target Start/End: Complemental strand, 12933242 - 12932947
Alignment:
Q  124 cattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgatttagttat 222  Q
    ||||||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||| |||   ||||||| ||| ||| ||||||  |||||||    
T  12933242 cattattaccattatattttgtagtttgggaattttgaaatacaaaataagatgataaaaataaaactctaattccttaagcaattaatgacgtagttat 12933143  T
Q  223 gattcgaatacacataaa--aatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattctt 320  Q
    ||||| |||| | ||| |  |||||||||| ||||||||||| | |||| ||||   |||| |  |||||||||||   ||| || |||| || ||||||    
T  12933142 gattctaataaagatataggaatatcagttcatctcaccagctaaaaagaccttctggattgtggtaagctctctagtgacatccacaatattcattctt 12933043  T
Q  321 tcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctcatgatgtccatct 416  Q
    ||||||||||| ||||  ||||| | |||| ||||||||| ||||||||| ||||| || | |  |||||||||| || ||||||||| |||||||    
T  12933042 tcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaacaaagcaatcttctatagttggaatatgaatctcatgatttccatct 12932947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 18556071 - 18555918
Alignment:
Q  97 acctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataat 195  Q
    |||||||||| |||||||||||  |   |||||||||||| ||||||||||||| |||||||| ||||||| |||| |||||||||||| ||||  ||||    
T  18556071 acctgaaattaaaatcaagaaggta---attattaccattatattttgtagtttgggaattttgaaatgcacaataagatgataaaaataaaattctaat 18555975  T
Q  196 tccataaccaaataatgatttagttatgattcgaatacac--ataaaaatatcagtt 250  Q
    ||||||| ||| |||||| ||||||||||||| |||| ||  |||| ||||||||||    
T  18555974 tccataagcaattaatgagttagttatgattcaaataaacttataagaatatcagtt 18555918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 12900421 - 12900241
Alignment:
Q  236 ataaaaatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattctttcttttggtgactcc 335  Q
    |||| |||||||||| ||||||||||| |||||| ||||   |||| |  |||||||||||   ||| || |||| || ||||||||||||||||| |||    
T  12900421 ataagaatatcagttcatctcaccagctagaaagaccttctggattgtggtaagctctctagtgacatccacaatattcattctttcttttggtgattcc 12900322  T
Q  336 attgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctcatgatgtccatct 416  Q
    |  ||||| | |||| ||||||||| |||||||||||||||||| | |  |||||||||| || ||||||||| |||||||    
T  12900321 aaagaacataaaagtgcaatcctaagaagtgaaactaagcactcttctatagttggaatatgaatctcatgatttccatct 12900241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 125 - 416
Target Start/End: Original strand, 17922641 - 17922938
Alignment:
Q  125 attattaccattgtattttgtagtttaggaatttt-aaatgcaaaatat---gatgataaaaatcaaatgataattccataaccaaataatgatttagtt 220  Q
    |||||||||||| ||||||||||||| |||||||| ||||||| || |    |||||| ||||| ||||  ||||||||||| ||| |||||  || |||    
T  17922641 attattaccattatattttgtagtttgggaattttgaaatgcacaacaacaagatgattaaaataaaattctaattccataagcaattaatgcgttggtt 17922740  T
Q  221 atgattcgaatacac--ataaaaatatcagtttatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattc 318  Q
    |||||   |||| ||  |||| |||||||||| ||||||||| | |||||| ||||   |||| |  |||||||||||   ||| || |||| || ||||    
T  17922741 atgatcgaaataaacttataagaatatcagttcatctcaccatctagaaagaccttctggattgtggtaagctctctagtgacatccacaatattcattc 17922840  T
Q  319 tttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcactcctttgaagttggaataagattctcatgatgtccatct 416  Q
    ||||||||||||| |||| |||||| | |||||||||||||||||| |||||||||||||||| |  |||||||| |||| ||||||||| |||||||    
T  17922841 tttcttttggtgattccaatgaacaaaaaagtccaatcctaaaaagggaaactaagcactcctctacagttggaagaagaatctcatgatttccatct 17922938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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