View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7930_low_7 (Length: 393)
Name: NF7930_low_7
Description: NF7930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7930_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 34171409 - 34171030
Alignment:
| Q |
1 |
taaacatgtgacaggtgctgtcacctactcattgtagcaacatgaaaaaccagtttcttaccnnnnnnncatttcg-cattcagaatttaaccctatcca |
99 |
Q |
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| T |
34171409 |
taaacatgtgacaggtgctgtcacctactcattgtagcaacatggaaaaccagtttcttaccaaaaaaacattttgacatgcagaatttaaccctatcca |
34171310 |
T |
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| Q |
100 |
tcaatggctccacagttaaagattttccaaagaagaaggattcataactggactttcaaaccgatcacacgatcaaatgttagataaaatctatcgcttt |
199 |
Q |
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| T |
34171309 |
tcaatggctccacagttaaagattttccaaagaagaaggattcataactggactttcaaaccgatcacacgatcaaatgtcagataaaatctatcgcttt |
34171210 |
T |
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| Q |
200 |
taaaaat----tattaatcaaaaagaaaagttaacaagtactgaatttaaagttagagagttgtagcactttcagttgttgatgttaggtgctgctggtg |
295 |
Q |
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| T |
34171209 |
taaaaataaattattaatcaaaaagaaaagttaacaagtactgaatttaaagttagagagttgtagcactttcagttgttgatgttaggtgctgctggtg |
34171110 |
T |
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| Q |
296 |
attttgggcttggcagttccttcgccgcggtctctgctgcaggcggagggggtttttgttcagtgggtggaagctctaga |
375 |
Q |
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| T |
34171109 |
attttgggcttggcagttccttcgccgcagtctctgctgcaggcggagggggtttttgttcagtgggtggaagctctaga |
34171030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 34142083 - 34141912
Alignment:
| Q |
1 |
taaacatgtgacaggtgctgtcacctactcattgtagcaacatgaaaaaccagtttcttaccnnnnnnncatttcg-cattcagaatttaacccta--tc |
97 |
Q |
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| T |
34142083 |
taaacatgggaccggtgctgtcacctactcattttagcaacatggatgaccaatgtcttgccaaataaacatttcgacatgcagaatccaatcctagatt |
34141984 |
T |
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| Q |
98 |
catcaatggctccacagttaaagattttccaaagaagaaggattcataactggactttcaaaccgatcacac |
169 |
Q |
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| T |
34141983 |
catcaatggctccagagttaaagactttctaaagaagaaggattcattataggactttcaaaccaatcacac |
34141912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 34141896 - 34141845
Alignment:
| Q |
208 |
attaatcaaaaagaaaagttaacaagtactgaatttaaagttagagagttgta |
260 |
Q |
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| T |
34141896 |
attaatcaaaaagaaaagttaacaagttctgaa-ttaaagttcgagagttgta |
34141845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 34174759 - 34174646
Alignment:
| Q |
115 |
ttaaagattttccaaagaagaaggattcataactggactttcaaaccgatcacacgatcaaatgttagataaaatctatcgcttttaaaaattattaatc |
214 |
Q |
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| T |
34174759 |
ttaaagatttcctaaagaa-aatgattcattccgggactttcaaactgatcacacaactaaatgt--cacaaaatctatcgtttttcaaa---attaatc |
34174666 |
T |
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| Q |
215 |
aaaaagaaaagttaacaagt |
234 |
Q |
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|||||||||||||||||||| |
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| T |
34174665 |
aaaaagaaaagttaacaagt |
34174646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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