View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7931_high_10 (Length: 351)

Name: NF7931_high_10
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7931_high_10
NF7931_high_10
[»] chr8 (3 HSPs)
chr8 (7-160)||(13073499-13073653)
chr8 (172-328)||(13073739-13073899)
chr8 (284-325)||(41939780-41939820)
[»] chr4 (2 HSPs)
chr4 (280-325)||(21121995-21122040)
chr4 (280-315)||(53813569-53813604)
[»] chr1 (2 HSPs)
chr1 (280-319)||(8326653-8326692)
chr1 (280-325)||(6570774-6570819)
[»] chr2 (2 HSPs)
chr2 (280-325)||(464157-464202)
chr2 (280-326)||(8216428-8216474)
[»] chr5 (1 HSPs)
chr5 (283-316)||(12567251-12567284)
[»] chr3 (1 HSPs)
chr3 (280-309)||(23229340-23229369)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 13073499 - 13073653
Alignment:
Q  7 acttcacttaaacaccaataatgagacatgacggatctaccctttgtgtatcgggg-gcctcacaaattaaataatttcttacctaataattggatatat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  13073499 acttcacttaaacaccaataatgagacatgacggatctaccctttgtgtattggggggcctcacaaattaaataatttcttacctaataattggatatat 13073598  T
Q  106 tttgtagttattcccccacatgaaatagagttgcggatgtaaacaaaacaaaaaa 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13073599 tttgtagttattcccccacatgaaatagagttgcggatgtaaacaaaaaaaaaaa 13073653  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 172 - 328
Target Start/End: Original strand, 13073739 - 13073899
Alignment:
Q  172 gacacttaatttaagatgaatggagtatgtttctaaatacatttgcatgcataagtaatttgagacggagggaatatgttcctaaatagattttcatgct 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13073739 gacacttaatttaagatgaatggagtatgtttctaaatacatttgcatgcataagtaatttgagacggagggaatatgttcctaaatagattttcatgct 13073838  T
Q  272 a--nnnnnnnaagccaaagag--aaaatataataaataaaaacaaacaggtataaagatcg 328  Q
    |         |||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  13073839 atttttttttaagccaaagagaaaaaatataataaataaaaacaaataggtataaagatcg 13073899  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 41939780 - 41939820
Alignment:
Q  284 caaagagaaaatataataaataaaaacaaacaggtataaaga 325  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  41939780 caaagagaaaatataataaat-aaaacaaacaggtacaaaga 41939820  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 21122040 - 21121995
Alignment:
Q  280 aagccaaagagaaaatataataaataaaaacaaacaggtataaaga 325  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  21122040 aagccaaagagaaaatataataaataaaaacaaacaggtacaaaga 21121995  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 53813569 - 53813604
Alignment:
Q  280 aagccaaagagaaaatataataaataaaaacaaaca 315  Q
    |||||||| |||||||||||||||||||||||||||    
T  53813569 aagccaaatagaaaatataataaataaaaacaaaca 53813604  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 8326653 - 8326692
Alignment:
Q  280 aagccaaagagaaaatataataaataaaaacaaacaggta 319  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8326653 aagccaaagagaaaatataataaataaaaacaaacaggta 8326692  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 6570774 - 6570819
Alignment:
Q  280 aagccaaagagaaaatataataaataaaaacaaacaggtataaaga 325  Q
    |||||||| |||||||||||||||||||||||||||| || |||||    
T  6570774 aagccaaatagaaaatataataaataaaaacaaacagatacaaaga 6570819  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 464202 - 464157
Alignment:
Q  280 aagccaaagagaaaatataataaataaaaacaaacaggtataaaga 325  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  464202 aagccaaagagaaaatatactaaataaacacaaacaggtataaaga 464157  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 8216428 - 8216474
Alignment:
Q  280 aagccaaagagaaaatataataaataaaaacaaacaggtataaagat 326  Q
    |||| ||| |||||||||||||||||||||||||||| || ||||||    
T  8216428 aagctaaatagaaaatataataaataaaaacaaacagatacaaagat 8216474  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 12567284 - 12567251
Alignment:
Q  283 ccaaagagaaaatataataaataaaaacaaacag 316  Q
    ||||| ||||||||||||||||||||||||||||    
T  12567284 ccaaaaagaaaatataataaataaaaacaaacag 12567251  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 309
Target Start/End: Complemental strand, 23229369 - 23229340
Alignment:
Q  280 aagccaaagagaaaatataataaataaaaa 309  Q
    ||||||||||||||||||||||||||||||    
T  23229369 aagccaaagagaaaatataataaataaaaa 23229340  T

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