View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7931_high_12 (Length: 292)
Name: NF7931_high_12
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 14664743 - 14664489
Alignment:
| Q |
18 |
agcagatagatgaggatagttgcatgttgcatcatgtacagatcagaaagagaaccaacaaatatcggaattgtgagaaaaaagagaaatcactcggtcc |
117 |
Q |
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| T |
14664743 |
agcagatagatgaggatagttgcatgttgcatcatgtacagatcagaaagagaaccaacaaatatcggaattgtgagaaaaaagagaaatcactcagtcc |
14664644 |
T |
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| Q |
118 |
ctctcctttccaaattccaaggatcttagttgtttggtttgatacttggccaaacttcgttactagacgtctttagtctattgtttgcgattattattgt |
217 |
Q |
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| T |
14664643 |
ctctcctttccaaattccaaggatcttagttgtttggtttgatacttggccaaacttcgttactagacgtctttagtctattgtttgcgattatta---- |
14664548 |
T |
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| Q |
218 |
ttcttttctctttcgaagctgtttgttgttctatcaataatctttaattcctcaacttt |
276 |
Q |
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| T |
14664547 |
ttcttttctctttcgaagctgtttgttgttctatcgataatctttaattcctcaacttt |
14664489 |
T |
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