View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7931_high_13 (Length: 279)

Name: NF7931_high_13
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7931_high_13
NF7931_high_13
[»] chr5 (8 HSPs)
chr5 (139-260)||(36912930-36913051)
chr5 (139-250)||(17591322-17591432)
chr5 (139-242)||(36912253-36912353)
chr5 (139-226)||(17590588-17590675)
chr5 (4-57)||(36912793-36912846)
chr5 (4-57)||(43054020-43054073)
chr5 (183-232)||(35107586-35107635)
chr5 (144-197)||(39086797-39086850)
[»] chr7 (3 HSPs)
chr7 (139-250)||(14735356-14735467)
chr7 (139-236)||(14736108-14736205)
chr7 (182-242)||(39045219-39045279)
[»] chr4 (1 HSPs)
chr4 (139-249)||(19129525-19129635)
[»] chr6 (1 HSPs)
chr6 (4-57)||(29382484-29382537)
[»] chr3 (1 HSPs)
chr3 (139-185)||(32355928-32355974)
[»] scaffold1052 (1 HSPs)
scaffold1052 (146-185)||(394-433)
[»] chr2 (1 HSPs)
chr2 (148-185)||(6182156-6182193)
[»] chr8 (1 HSPs)
chr8 (153-198)||(41707370-41707415)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 36912930 - 36913051
Alignment:
Q  139 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaattgttcaaaaacaacttttccatggtgagaaaaaatagcatttcccatac 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36912930 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaacttttccatggtgagaaaaaatagcatttcccatac 36913029  T
Q  239 taaattccaccgaagagacaac 260  Q
    ||||||||||||||||||||||    
T  36913030 taaattccaccgaagagacaac 36913051  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 17591322 - 17591432
Alignment:
Q  139 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaattgttcaaaaacaacttttccatggtgagaaaaaatagcatttcccatac 238  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||  |||||||| |    
T  17591322 aatcaagtttgaagagactattataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtg-gaaaaaatagtctttcccatgc 17591420  T
Q  239 taaattccaccg 250  Q
    ||||| ||||||    
T  17591421 taaatcccaccg 17591432  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 36912353 - 36912253
Alignment:
Q  139 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaattgttcaaaaacaacttttccatggtgagaaaaaatagcatttcccatac 238  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||| |    
T  36912353 aatcaagtgtgaagagactatcataagatcaatgttc---ttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagcctttcccatgc 36912257  T
Q  239 taaa 242  Q
    ||||    
T  36912256 taaa 36912253  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 17590675 - 17590588
Alignment:
Q  139 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaattgttcaaaaacaacttttccatggtgagaaaaaatag 226  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||  ||||||||||    
T  17590675 aatcaagtgtgaagagattatcataagatcaatgttcctcttaaatcaaatggttcaaaaacatctttcccatggtaggaaaaaatag 17590588  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 36912793 - 36912846
Alignment:
Q  4 agtagcagagatggaagaattattttgttttcgactaacaaacgtagaaaaata 57  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  36912793 agtagaagagatggaagaattattttgttttcaactaacaaacgtagaaaaata 36912846  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 43054020 - 43054073
Alignment:
Q  4 agtagcagagatggaagaattattttgttttcgactaacaaacgtagaaaaata 57  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  43054020 agtagaagagatggaagaattattttgttttcaactaacaaccgtagaaaaata 43054073  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 35107586 - 35107635
Alignment:
Q  183 atcaaattgttcaaaaacaacttttccatggtgagaaaaaatagcatttc 232  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  35107586 atcaaatggttcaaaaacaacttttctatggtgggaaaaaatagcatttc 35107635  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 39086850 - 39086797
Alignment:
Q  144 agtgtgaagagactatcataagatcaatgttcctcttaaatcaaattgttcaaa 197  Q
    ||||||||||| |||| |||||||||||||| |||||  ||||||| |||||||    
T  39086850 agtgtgaagagtctatgataagatcaatgtttctcttttatcaaatggttcaaa 39086797  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 14735467 - 14735356
Alignment:
Q  139 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaattgttcaaaaacaacttttccatggtgagaaaaaatagcatttcccatac 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| |    
T  14735467 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatgattcaaaaacaatttttccatggtgggaaaaaatagtctttcccatgc 14735368  T
Q  239 taaattccaccg 250  Q
    |||| |||||||    
T  14735367 taaactccaccg 14735356  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 14736108 - 14736205
Alignment:
Q  139 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaattgttcaaaaacaacttttccatggtgagaaaaaatagcatttcccat 236  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||  ||||||||||| ||||||||    
T  14736108 aatcaagtgtgaagagattatcataagatcaatgttcctcttaaatcaaatggttcaaaaacatctttcccatggtaggaaaaaatagcctttcccat 14736205  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 39045219 - 39045279
Alignment:
Q  182 aatcaaattgttcaaaaacaacttttccatggtgagaaaaaatagcatttcccatactaaa 242  Q
    |||||||  ||| ||||||||||||||||||||| |||||| |||| |||||||| |||||    
T  39045219 aatcaaagggttgaaaaacaacttttccatggtgggaaaaagtagcctttcccatgctaaa 39045279  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 19129635 - 19129525
Alignment:
Q  139 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaattgttcaaaaacaacttttccatggtgagaaaaaatagcatttcccatac 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||| |||  ||| |    
T  19129635 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggagaaaatagcctttttcatgc 19129536  T
Q  239 taaattccacc 249  Q
    |||| ||||||    
T  19129535 taaactccacc 19129525  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 29382484 - 29382537
Alignment:
Q  4 agtagcagagatggaagaattattttgttttcgactaacaaacgtagaaaaata 57  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  29382484 agtagaagagatggaagaattattttgttttcaactaacaaccgtagaaaaata 29382537  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 32355974 - 32355928
Alignment:
Q  139 aatcaagtgtgaagagactatcataagatcaatgttcctcttaaatc 185  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  32355974 aatctagtgtgaagagactatcataagatcaatgttcatcttaaatc 32355928  T

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Target: scaffold1052 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 433 - 394
Alignment:
Q  146 tgtgaagagactatcataagatcaatgttcctcttaaatc 185  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  433 tgtgaagagactatcataagatcaatgttcatcttaaatc 394  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 6182193 - 6182156
Alignment:
Q  148 tgaagagactatcataagatcaatgttcctcttaaatc 185  Q
    |||||||||||||||||||||||||||| |||||||||    
T  6182193 tgaagagactatcataagatcaatgttcatcttaaatc 6182156  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 41707370 - 41707415
Alignment:
Q  153 agactatcataagatcaatgttcctcttaaatcaaattgttcaaaa 198  Q
    ||||||| ||||||| ||||||||||||||||||||| ||| ||||    
T  41707370 agactattataagattaatgttcctcttaaatcaaatggttaaaaa 41707415  T

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