View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7931_high_8 (Length: 382)
Name: NF7931_high_8
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 46304689 - 46304324
Alignment:
| Q |
1 |
tcaaaacagaagtctagaataaacttagtacatatnnnnnnnnttaaatatgacagggcttgattactcacaagtaccacaaaccagataattggcaaat |
100 |
Q |
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| T |
46304689 |
tcaaaacagaagtccagaataaacttagtacatataaaaaaaattaaatatgacagggcttgattactcacaagtaccacaaaccagataattggcaaat |
46304590 |
T |
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| Q |
101 |
atccggagacaaaattccagtcaacatattccctcgcaatccactgtatcattgtgcaaaacataccacaactgaaatattagaaatatccaagttataa |
200 |
Q |
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| T |
46304589 |
atccggagacaaaattccagtcaacatattccctcgcaatccactgtatcattgtgcaaaacataccacaactgaaatattagaaatatccaagttataa |
46304490 |
T |
|
| Q |
201 |
tgtataatgtacattataaaagaaaggtaacctacaggtattgcaatacttcattccaatagagtagccttggtatctctcctatgagcttatttcgagc |
300 |
Q |
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| T |
46304489 |
tgtataatgtacattataaaagaaaggtaacctacaggtattgcaatacttcattccaatagagtagccttggtatctctcctatgagcttatttcgagc |
46304390 |
T |
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| Q |
301 |
aagatcactgtaaacatgacaaaggagtggttatagttgttactagcaagacaataagtataaaat |
366 |
Q |
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| T |
46304389 |
aagatcactgtaaacatgacaaaagagtggttatagttgttactagcaagacaataagtataaaat |
46304324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 26377209 - 26377138
Alignment:
| Q |
72 |
aagtaccacaaaccagataattggcaaatatccggagacaaaattccagtcaacatattccctcgcaatcca |
143 |
Q |
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| T |
26377209 |
aagtaccacaaactagataattggcaaatatcaggagacaaaaatccaatcaacatgttccctcgcaatcca |
26377138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 26377107 - 26377075
Alignment:
| Q |
273 |
gtatctctcctatgagcttatttcgagcaagat |
305 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
26377107 |
gtatttctcctatgagcttatttcgagcaagat |
26377075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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