View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7931_high_9 (Length: 360)
Name: NF7931_high_9
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 46685543 - 46685868
Alignment:
| Q |
13 |
gtttggtgttagattaatgaagaaagttaaaaactaacatataataatggaataaagattatcaagcagtggaatcgataatcaaaaactactttccttt |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46685543 |
gtttggtgttaggttaatgaagaaagttaaaaactaacatataataatggaataaagattatcaagcagtggaatcgacaatcaaaaactactttccttt |
46685642 |
T |
|
| Q |
113 |
tcctttgtgggatactctgacataaatcttcattttcctcttccttttcatgatttgaaccagaagaacatggatcaatcggacatttccccaacgctat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
46685643 |
tcctttgtgggatactctgacataaatctgcattttcctcttccttttcatgatttgaaccagaagaagatggatcaatcggacgtttccccagcgctat |
46685742 |
T |
|
| Q |
213 |
cgttgtccttctcatgttttgatttaactgttgattcgttatgttcttgaactccactttcattgtccttttcggggtactccgaccgaaatattttgta |
312 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
46685743 |
cattgtccttctcatgttttgatttaactgttgattcgttatgttcttgaactccactttcattgtcctttttggggtactccgaccgaaatcttttgta |
46685842 |
T |
|
| Q |
313 |
gcctgaacttcattctctgatggccc |
338 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46685843 |
gcctgaacttcattctctgatggccc |
46685868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 46703566 - 46703734
Alignment:
| Q |
14 |
tttggtgttagattaatgaagaaagttaaaaactaacatataataatggaataaagattatcaagcagtggaatcgataatcaaaaact--actttcctt |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||| |||| |||||||| |
|
|
| T |
46703566 |
tttggtgttaggctaatgaagaaagttaaaaactaacatataataatggaataaggattatagagcagaggaatcgatgatcaacaactacactttcctc |
46703665 |
T |
|
| Q |
112 |
ttcctttgtgggatactctgacataaatcttcattttcctcttccttttcatgatttgaaccagaagaa |
180 |
Q |
| |
|
||||||| ||||||||||||| ||||| | |||||||||||||| |||| | ||||||||||||| |
|
|
| T |
46703666 |
ttccttttgcggatactctgacaaaaatcagctctttcctcttcctttacatgttctgaaccagaagaa |
46703734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 46677010 - 46677148
Alignment:
| Q |
14 |
tttggtgttagattaatgaagaaagttaaaaactaacatataa------taatggaataaagattatcaagcagtggaatcgataatcaaaaact--act |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
46677010 |
tttggtgttaggctaatgaagaaagttaaaaactaaggtataataataataatggaataaagattatcaagctgtggaatcgataataaaaaactacact |
46677109 |
T |
|
| Q |
106 |
ttccttttcctttgtgggatactctgacataaatcttca |
144 |
Q |
| |
|
||||| ||||||| ||| |||||||||| ||||||||| |
|
|
| T |
46677110 |
ttcctcttccttttgggggtactctgacagaaatcttca |
46677148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 21728227 - 21728345
Alignment:
| Q |
28 |
aatgaagaaagttaaaaactaacatataataatggaataaagattatcaagcagtggaatcgataatcaaaaactac--tttccttttcctttgtgggat |
125 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||||| |||||| ||| || ||||||| ||| |
|
|
| T |
21728227 |
aatgaagaaagttaaaaactaacatgtaataatggaataaagattataaagaagaagaatcaataatcaataactaccattttctcttccttttgggggc |
21728326 |
T |
|
| Q |
126 |
actctgacataaatcttca |
144 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
21728327 |
agtctgacataaatcttca |
21728345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University