View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7931_low_1 (Length: 1034)

Name: NF7931_low_1
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7931_low_1
NF7931_low_1
[»] chr1 (4 HSPs)
chr1 (393-1031)||(30653247-30653886)
chr1 (15-397)||(30654023-30654397)
chr1 (393-735)||(51084996-51085338)
chr1 (575-609)||(20638273-20638307)
[»] chr7 (1 HSPs)
chr7 (491-735)||(37369492-37369737)
[»] chr4 (1 HSPs)
chr4 (920-1031)||(10214463-10214574)
[»] chr5 (6 HSPs)
chr5 (220-397)||(14859056-14859231)
chr5 (403-680)||(14858634-14858909)
chr5 (807-1027)||(14857929-14858154)
chr5 (123-190)||(12716746-12716813)
chr5 (123-190)||(12777977-12778044)
chr5 (460-609)||(38945080-38945231)
[»] chr6 (1 HSPs)
chr6 (575-610)||(21697435-21697470)
[»] chr2 (2 HSPs)
chr2 (575-618)||(218542-218585)
chr2 (644-695)||(36472944-36472995)
[»] chr8 (2 HSPs)
chr8 (575-617)||(18479867-18479909)
chr8 (575-612)||(25750105-25750142)
[»] scaffold0114 (1 HSPs)
scaffold0114 (575-612)||(12941-12978)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 393 - 1031
Target Start/End: Complemental strand, 30653886 - 30653247
Alignment:
Q  393 ccttcttacattatgagcatatatctcctccctaataaattgattgatggcatagnnnnnnnttataaatgctttttggtggggtcatggtgtaacacga 492  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||    
T  30653886 ccttcttacattatgagcatacatctcctccctaataaattgattgatggcatagaaaaaa-ttataaatgctttttggtggtgtcatggtgtaacacga 30653788  T
Q  493 gaaaaggtatgcactggttgtcttcggaaagattgtttgttcacaaaattttggaggtatgggattcgaggatcttactaactttaatgtggcgatgctt 592  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30653787 gaaaaggtatgcactggttgtcttgggaaagattgtttgttcccaaaattttggaggtatgggattcgaggatcttactaactttaatgtggcgatgctt 30653688  T
Q  593 ggtaaacagggttggaagttttaaacgaacaccaatagccttgatattagattgtttaaagctcattattttcctaacaatgattttataggttc-aaga 691  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||    
T  30653687 ggtaaacagggttggaagttttaaacaaacaccaatagccttgttattagattttttaaagctcattattatcctaacaatgattttataggttctaaga 30653588  T
Q  692 ttgggaattaactagacctatgtgtggaaaagcattttcaccgcnnnnnnnnnnnnnnnnnnnnggtgcaagataggtacatgtaccaatattctgttgt 791  Q
    ||||||||||||||||||||||| ||||||||||||||||||||                    ||||||||||| ||||||||||||||||||||||||    
T  30653587 ttgggaattaactagacctatgtttggaaaagcattttcaccgc-aaaaaaagttgtgaaaaaaggtgcaagatatgtacatgtaccaatattctgttgt 30653489  T
Q  792 ttggtacgccttggcttgcaaatggaatgttccttgcagattataatcccatatttgcgcctttagctcatgtctaggtgaaggatatcatcaaccagtt 891  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  30653488 ttggtgcgccttggcttgcaaatggaatgttccttgcatattataatcccatatttgtgcctttagctcatgtcaaggtgaaggatatcatcaaccaatt 30653389  T
Q  892 tgata--gtatggaatgctcctttaatatataatatgtttgatctaaacacggctcaattgattttaaatacattgttgcatctgttggttgatgaagat 989  Q
    |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30653388 tgataaggtatgtaatgctcctttaatatataatatgtttgatctaaacacggctcaattgattttaaatacattgttgcatctgttggttgatgaagat 30653289  T
Q  990 agattgattttaaaaactgaaaagaacggcatgtattcggtg 1031  Q
    | ||||||||| |||||||||||||||| |||||||||||||    
T  30653288 aaattgattttcaaaactgaaaagaacgacatgtattcggtg 30653247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 30654397 - 30654023
Alignment:
Q  15 atacttggctggggttgcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcaaacaagctgaaagaag 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30654397 atacttggctggggtggcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcagacaagctgaaagaag 30654298  T
Q  115 aggagacttgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttcctttttctcatggcagaagatcga 214  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  30654297 gggagacttgcatgacatacgaatatgcactgatgcgcctgttatatctcacctattatttgcaaatgattgtttcctttttctcagggcggaagatcga 30654198  T
Q  215 gaagctcaagtgatgaaaaatatattagccacatatgaagctacttttgcgcaggctattagcttacccaagttttgaagtgtactatagcaatcatgtg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||       |||||||| ||||    
T  30654197 gaagctcaagtgatgaaaaatatattagccacatatgaagctacttttgcgtaggctattagcttacccaag-tttgaag-------tagcaatcgtgtg 30654106  T
Q  315 gaagcatcgcaaagagactccataaccaatactttaggtgcccgtgctgttatgggaacagaaaaatatcttggtctgccttc 397  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||    
T  30654105 gaagcatcgcaaagagactccataaccaatactttaggtgtccgtactgttatgggaacaggaaaatatcttggtctcccttc 30654023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 393 - 735
Target Start/End: Complemental strand, 51085338 - 51084996
Alignment:
Q  393 ccttcttacattatgagcatatatctcctccctaataaattgattgatggcatagnnnnnnnttataaatgctttttggtggggtcatggtgtaac-acg 491  Q
    ||||||||  ||||||| ||||||||||||||||| |||||||||||||| || |       | |||||| ||||||||||||| ||||| |   | | |    
T  51085338 ccttcttatgttatgagtatatatctcctccctaacaaattgattgatgggattgaaaaa--tgataaatactttttggtgggggcatgggggttcgagg 51085241  T
Q  492 agaaaaggtatgcactggttgtcttcggaaagattgtttgttcacaaaattt-tggaggtatgggattcgaggatcttactaactttaatgtggcgatgc 590  Q
    || ||||||||||| |||||||||| ||| ||||||  |||||| |||| |  ||| |||||||| ||  |||| ||| ||   ||||||||||||||||    
T  51085240 aggaaaggtatgcattggttgtcttgggagagattgactgttcataaaactcgtggtggtatggggtttaaggaccttgcttcttttaatgtggcgatgc 51085141  T
Q  591 ttggtaaacagggttggaagttttaaacgaacaccaatagccttgatattagattgtttaaagctcattattttcctaacaatgattttataggttcaag 690  Q
    ||||||||||||| ||||||||| ||||  |     |||||||||  | |||||| ||||||||||  |||||||| |||||||||||| |||| |||||    
T  51085140 ttggtaaacaggggtggaagtttcaaacagatgttgatagccttgtaactagattatttaaagctcgatattttccgaacaatgattttttagggtcaag 51085041  T
Q  691 attgggaattaactagacctatgtgtggaaaagcattttcaccgc 735  Q
     ||||||| |||    |  |||||||||| ||||||||| |||||    
T  51085040 gttgggaagtaatcctagttatgtgtggagaagcatttttaccgc 51084996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 575 - 609
Target Start/End: Original strand, 20638273 - 20638307
Alignment:
Q  575 tttaatgtggcgatgcttggtaaacagggttggaa 609  Q
    ||||||||||||||||||||||||||||| |||||    
T  20638273 tttaatgtggcgatgcttggtaaacagggatggaa 20638307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 491 - 735
Target Start/End: Complemental strand, 37369737 - 37369492
Alignment:
Q  491 gagaaaaggtatgcactggttgtcttcggaaagattgtttgttcacaaa-attttggaggtatgggattcgaggatcttactaactttaatgtggcgatg 589  Q
    |||||| || |||||  ||||||||| | |||| ||| ||||||||||| ||| |||||||||| ||||  |||| ||| ||   |||| ||||||||||    
T  37369737 gagaaagggcatgcatcggttgtcttggaaaagtttgattgttcacaaatattatggaggtatgagatttaaggaccttgcttcttttattgtggcgatg 37369638  T
Q  590 cttggtaaacagggttggaagttttaaacgaacaccaatagccttgatattagattgtttaaagctcattat-tttcctaacaatgattttataggttca 688  Q
    | |||||||||||| || |||||| ||||| |  ||| |||||||| || ||||||||||||||||  || | ||||| || | ||| ||||||||||||    
T  37369637 cctggtaaacaggggtgaaagtttcaaacggatcccactagccttgttactagattgtttaaagcttgttgtatttccaaatagtga-tttataggttca 37369539  T
Q  689 agattgggaattaactagacctatgtgtggaaaagcattttcaccgc 735  Q
    || ||||||  |||   ||  ||||||||||||||||||||||||||    
T  37369538 aggttgggatgtaatatgagttatgtgtggaaaagcattttcaccgc 37369492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 920 - 1031
Target Start/End: Original strand, 10214463 - 10214574
Alignment:
Q  920 taatatgtttgatctaaacacggctcaattgattttaaatacattgttgcatctgttggttgatgaagatagattgattttaaaaactgaaaagaacggc 1019  Q
    |||||||||||||||||| ||||||||| |||| ||||||||   |||||||| |||||||||| |||||| ||||||||  |||  ||||||||| ||     
T  10214463 taatatgtttgatctaaatacggctcaaatgatcttaaatacgccgttgcatccgttggttgattaagataaattgatttggaaagttgaaaagaatgga 10214562  T
Q  1020 atgtattcggtg 1031  Q
    ||||||||||||    
T  10214563 atgtattcggtg 10214574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 220 - 397
Target Start/End: Complemental strand, 14859231 - 14859056
Alignment:
Q  220 tcaagtgatgaaaaatatattagccacatatgaagctacttttgcgcaggctattagcttacccaagttttgaagtgtactatagcaatcatgtggaagc 319  Q
    |||||||||||| ||||| ||||  || ||||||| |||||||| | |||||||||||||||||||||    |||||||||||| ||| | ||||||| |    
T  14859231 tcaagtgatgaataatattttaggaacctatgaagttacttttgggtaggctattagcttacccaagtcca-aagtgtactataacaaccgtgtggaaac 14859133  T
Q  320 atcgcaaagagactccataaccaatactttaggtgcccgtgctgttatgggaacagaaaaatatcttggtctgccttc 397  Q
    | | | |||||| ||||| ||||||||| ||||||  | ||||||| |||| |||  ||||||||||||||| |||||    
T  14859132 aacactaagagaatccatcaccaatactctaggtg-tcatgctgttttggggacaagaaaatatcttggtcttccttc 14859056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 403 - 680
Target Start/End: Complemental strand, 14858909 - 14858634
Alignment:
Q  403 ttatgagcatatatctcctccctaataaattgattgatggcatagnnnnnnnttataaatgctttttggtggggtcatggtgtaacac-gagaaaaggta 501  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||        | |||||||||||||||||||||||||| |   ||  ||||||||  |    
T  14858909 ttatgatcatatatctccatcctaataaatttattgatggcata-aaaaaaatgataaatgctttttggtggggtcatggcggttcaatgagaaaagaca 14858811  T
Q  502 tgcactggttgtcttcggaaagattgtttgttcacaaaattt-tggaggtatgggattcgaggatcttactaactttaatgtggcgatgcttggtaaaca 600  Q
    ||||||||||||||| ||||| ||||| |  ||  ||| ||| |||||| ||||||| | ||||| |||||  |||||||||||| ||||||| ||||||    
T  14858810 tgcactggttgtctt-ggaaacattgtct--tcttaaattttatggaggaatgggatccaaggatattacttcctttaatgtggcaatgcttgataaaca 14858714  T
Q  601 gggttggaagttttaaacgaacaccaatagccttgatattagattgtttaaagctcattattttcctaacaatgatttta 680  Q
     |||| ||||||| ||||  | |||| |||||||  |  |||| | ||||| |||  ||||||| |||||||||||||||    
T  14858713 aggttagaagtttcaaacagataccactagccttatttctagactatttaaggcttgttatttttctaacaatgatttta 14858634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 807 - 1027
Target Start/End: Complemental strand, 14858154 - 14857929
Alignment:
Q  807 ttgcaaatggaatgttccttgcagattataatcccatatttgcgcctttagctcatgtctaggtgaaggatatcatcaaccagtttgata--gtatggaa 904  Q
    |||||||||| |||| ||||||| |  | |||||||  |||||||||||||| ||| |  |||||||||| |||||  | |||| |||||  ||||||||    
T  14858154 ttgcaaatggcatgtcccttgcatacgacaatcccacttttgcgcctttagcccatattaaggtgaaggacatcattgaacagtctgataaggtatggaa 14858055  T
Q  905 tgctcctttaatatataata---tgtttgatctaaacacggctcaattgattttaaatacattgttgcatctgttggttgatgaagatagattgatttta 1001  Q
    ||| ||||| |||||| |||   ||||||||| ||| ||  ||||||| || || | || | ||||||||  |||||||||||||| || ||||||||      
T  14858054 tgcgcctttcatatattataatttgtttgatccaaatacaactcaattaatcttgagtatactgttgcattcgttggttgatgaaggtaaattgatttgg 14857955  T
Q  1002 aaaactgaaaagaacggcatgtattc 1027  Q
    |||  ||||||||| || ||||||||    
T  14857954 aaagttgaaaagaatggtatgtattc 14857929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 12716813 - 12716746
Alignment:
Q  123 tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc 190  Q
    |||||||||||   ||||||||| |||| || ||||| |||||||| ||||||||| |||||||||||    
T  12716813 tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc 12716746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 12778044 - 12777977
Alignment:
Q  123 tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc 190  Q
    |||||||||||   ||||||||| |||| || ||||| |||||||| ||||||||| |||||||||||    
T  12778044 tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc 12777977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 460 - 609
Target Start/End: Original strand, 38945080 - 38945231
Alignment:
Q  460 aatgctttttggtggggtcatggtgtaac-acgagaaaaggtatgcactggttgtcttcggaaagattgtttgttcacaa-aattttggaggtatgggat 557  Q
    |||||||| |||||||| |||||||   | || ||||||||| |||| ||| | |||| |||| | || | |||||| || |||| ||| ||||||||||    
T  38945080 aatgctttatggtggggacatggtggctctactagaaaaggtttgcattggctatcttaggaacgtttatctgttcataagaattatggtggtatgggat 38945179  T
Q  558 tcgaggatcttactaactttaatgtggcgatgcttggtaaacagggttggaa 609  Q
    || |||| || ||    ||||||||||||||||||||||||||||| |||||    
T  38945180 tcaaggacctcacatcttttaatgtggcgatgcttggtaaacagggatggaa 38945231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 610
Target Start/End: Original strand, 21697435 - 21697470
Alignment:
Q  575 tttaatgtggcgatgcttggtaaacagggttggaag 610  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21697435 tttaatgtggcaatgcttggtaaacagggttggaag 21697470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 618
Target Start/End: Original strand, 218542 - 218585
Alignment:
Q  575 tttaatgtggcgatgcttggtaaacagggttggaagttttaaac 618  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||    
T  218542 tttaatgtggcaatgcttggaaaacagggttggaagtttcaaac 218585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 695
Target Start/End: Original strand, 36472944 - 36472995
Alignment:
Q  644 ttgtttaaagctcattattttcctaacaatgattttataggttcaagattgg 695  Q
    ||||||||||||| ||||||| |||||| |||||||||||||  ||||||||    
T  36472944 ttgtttaaagctcgttatttttctaacattgattttataggtcaaagattgg 36472995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 575 - 617
Target Start/End: Original strand, 18479867 - 18479909
Alignment:
Q  575 tttaatgtggcgatgcttggtaaacagggttggaagttttaaa 617  Q
    ||||||||||||||||||||||||||||| || || |||||||    
T  18479867 tttaatgtggcgatgcttggtaaacagggatgaaaattttaaa 18479909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 575 - 612
Target Start/End: Complemental strand, 25750142 - 25750105
Alignment:
Q  575 tttaatgtggcgatgcttggtaaacagggttggaagtt 612  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  25750142 tttaatgtggcaatgcttggtaaacagggttggcagtt 25750105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 575 - 612
Target Start/End: Complemental strand, 12978 - 12941
Alignment:
Q  575 tttaatgtggcgatgcttggtaaacagggttggaagtt 612  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  12978 tttaatgtggcaatgcttggtaaacagggttggcagtt 12941  T

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