View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7931_low_14 (Length: 274)
Name: NF7931_low_14
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 256
Target Start/End: Complemental strand, 6480083 - 6479831
Alignment:
| Q |
4 |
tcgtacttgttgtggtttttgttagggagagcgtaatcgattgtggtgatggacattgtggattttcaaagaatattattgaattcttgaaagctaagtg |
103 |
Q |
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| T |
6480083 |
tcgtacttgttgtggtttttgttagggagagcgtaatcgattgtggtgatggacattgtggattttcaaagaatattattgaattcttgaaagctaagtg |
6479984 |
T |
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| Q |
104 |
atgtatnnnnnnntagggtagtcaaatatatagaagatgaattcattcataaaggctgccgatgcatgtacaatgctatagatatttgtaacgcgcttca |
203 |
Q |
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| T |
6479983 |
atgtataaaaaaatagggtagttaaatatatagaagatgaattcattcataaaggctgccgatgcatgtacaatgttatagatatttgtaacgcgcttca |
6479884 |
T |
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| Q |
204 |
atgtatcttggccactttgcttgcggagatcccatgaatcataatagagctta |
256 |
Q |
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| T |
6479883 |
atatatcttggccaatttgcttgcggagatcccatgaatcataatagagctta |
6479831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 6489485 - 6489654
Alignment:
| Q |
20 |
ttttgttagggagagcgtaatcgattgtggtgatggacattgtggattttcaaagaatattattgaattcttgaaagctaagtgatgtat--nnnnnnnt |
117 |
Q |
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| T |
6489485 |
ttttgttagggagagcataaccgattgtggtgatggacaacgtggattttcaaagaatattattgaattcttgaaagc-aagtgatgtataaaaaaaaat |
6489583 |
T |
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| Q |
118 |
agggtagtcaaatatatagaagatgaattcattcataaaggctgccgatgcatgtacaatgctatagatat |
188 |
Q |
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| T |
6489584 |
aggctagtcaaatatataaaaggtgaattcattcataaaggctgccgatacatgtacaatgttatagatat |
6489654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 51946819 - 51946714
Alignment:
| Q |
4 |
tcgtacttgttgtggtttttgttagggagagcgtaatcgattgtggtgatggacattgtggattttcaaagaatattattgaattcttgaaagctaagtg |
103 |
Q |
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|||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
51946819 |
tcgtgcttgttgtgagttttattagggacagcgtaatcgattgtggtgatggacatcgtggattttcaatgaatattattgaattcttgagagctaagtg |
51946720 |
T |
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| Q |
104 |
atgtat |
109 |
Q |
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|||||| |
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| T |
51946719 |
atgtat |
51946714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 38702399 - 38702461
Alignment:
| Q |
190 |
tgtaacgcgcttcaatgtatcttggccactttgcttgcggagatcccatgaatcataatagag |
252 |
Q |
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| T |
38702399 |
tgtaatgcgcttcaatgtatcttggccactttccttacgaagatcccctgaatcctaatagag |
38702461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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