View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7931_low_16 (Length: 233)
Name: NF7931_low_16
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 4362742 - 4362935
Alignment:
| Q |
14 |
gcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4362742 |
gcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcata |
4362841 |
T |
|
| Q |
114 |
tatgatgaaccaattgacggaaaaatggaccactgtgattcccaagatacgaatgttattgttgttggtgatgaaaatgaatgctcttccaaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4362842 |
tatgatgaaccaattgacggaaaaatggaccactgtgattcccaagatacgaatgttattgttggtggtgatgaaaatgaatgctcttccaaga |
4362935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 4346553 - 4346754
Alignment:
| Q |
14 |
gcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcata |
113 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4346553 |
gcagagaatgatatcgaatatggaacctggtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcata |
4346652 |
T |
|
| Q |
114 |
tatgatgaaccaattgacggaaaaatggaccactgtgattcccaagatacgaatgttattgttgttggtgatgaaaatgaatgctcttccaagagggttt |
213 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||||| | | ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4346653 |
tatgatgaaccaattgacgaaaaaatagaccattgtgatgcaccagatatgaatgttattgttggtggtgatgaaaatgaatgctcttccaagaggattt |
4346752 |
T |
|
| Q |
214 |
ct |
215 |
Q |
| |
|
|| |
|
|
| T |
4346753 |
ct |
4346754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 4122747 - 4122636
Alignment:
| Q |
16 |
agagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatata |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||| | | |||| | ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
4122747 |
agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata |
4122648 |
T |
|
| Q |
116 |
tgatgaaccaat |
127 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4122647 |
tgatgaaccaat |
4122636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 4132726 - 4132608
Alignment:
| Q |
8 |
ggagtagcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttat |
107 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||| | ||| ||||| | ||||||||| |||||||||||||||| |
|
|
| T |
4132726 |
ggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattgttgtttt--tgg-gaacagtttcattgtgatgaagacagcagtttat |
4132630 |
T |
|
| Q |
108 |
ctcatatatgatgaaccaattg |
129 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4132629 |
ctcatatatgatgaaccaattg |
4132608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 4319413 - 4319296
Alignment:
| Q |
8 |
ggagtagcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttat |
107 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||||||| |||||||| ||||| || | | ||||| | ||||||||| |||||||||||||||| |
|
|
| T |
4319413 |
ggagtggcagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttat |
4319314 |
T |
|
| Q |
108 |
ctcatatatgatgaacca |
125 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4319313 |
ctcatatatgatgaacca |
4319296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 4337086 - 4337199
Alignment:
| Q |
8 |
ggagtagcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttat |
107 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| ||||| ||||| |||||||| | | ||||| | ||||||| || |||| |||||||| |
|
|
| T |
4337086 |
ggagtggcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttat |
4337185 |
T |
|
| Q |
108 |
ctcatatatgatga |
121 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
4337186 |
ctcatatatcatga |
4337199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 4330561 - 4330591
Alignment:
| Q |
20 |
agtgatatcaaatatggaacctggtgacaaa |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4330561 |
agtgatatcaaatatggaacctggtgacaaa |
4330591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 36213015 - 36212912
Alignment:
| Q |
25 |
tatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaacc |
124 |
Q |
| |
|
|||||| ||| ||||||||||| ||| ||||| | |||||||| | | ||||||| ||||||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
36213015 |
tatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcatttatgatgaacc |
36212916 |
T |
|
| Q |
125 |
aatt |
128 |
Q |
| |
|
|||| |
|
|
| T |
36212915 |
aatt |
36212912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 5242595 - 5242493
Alignment:
| Q |
36 |
gaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaaccaattgacggaa |
135 |
Q |
| |
|
||||||||| ||||||||||| | ||| |||| | | ||||| | ||||||||| |||||||| |||||||||| |||||||||||||||||| | ||| |
|
|
| T |
5242595 |
gaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgatgaaccaattggcagaa |
5242496 |
T |
|
| Q |
136 |
aaa |
138 |
Q |
| |
|
||| |
|
|
| T |
5242495 |
aaa |
5242493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 5126732 - 5126619
Alignment:
| Q |
16 |
agagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatata |
115 |
Q |
| |
|
||||||| |||||| ||| ||| ||||| ||||||| ||||| |||||||| | |||| | ||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5126732 |
agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata |
5126633 |
T |
|
| Q |
116 |
tgatgaaccaattg |
129 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5126632 |
tgatgaaccaattg |
5126619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 5427101 - 5427218
Alignment:
| Q |
25 |
tatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaacc |
124 |
Q |
| |
|
|||||| ||| ||||||||| ||||| ||||| | ||| |||| | | ||||| | || ||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
5427101 |
tatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatgatgaacc |
5427200 |
T |
|
| Q |
125 |
aattgacggaaaaatgga |
142 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
5427201 |
aattggcaaaaaaatgga |
5427218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 5177930 - 5178057
Alignment:
| Q |
15 |
cagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatat |
114 |
Q |
| |
|
|||||||| |||||| ||| |||||| || ||||||||||| | |||||||| | | |||| | ||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
5177930 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat |
5178029 |
T |
|
| Q |
115 |
atgatgaaccaattgacggaaaaatgga |
142 |
Q |
| |
|
||||||||||||||| | ||||||||| |
|
|
| T |
5178030 |
atgatgaaccaattggagaaaaaatgga |
5178057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 5279755 - 5279882
Alignment:
| Q |
15 |
cagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatat |
114 |
Q |
| |
|
|||||||| |||||| ||| |||||| || ||||||||||| | |||||||| | | |||| | ||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
5279755 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat |
5279854 |
T |
|
| Q |
115 |
atgatgaaccaattgacggaaaaatgga |
142 |
Q |
| |
|
||||||||||||||| | ||||||||| |
|
|
| T |
5279855 |
atgatgaaccaattggagaaaaaatgga |
5279882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 5346220 - 5346327
Alignment:
| Q |
15 |
cagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatat |
114 |
Q |
| |
|
|||||||| |||||| ||| ||||||||| ||||||||||| | || ||||| || | ||| | ||||||||| |||||||||| |||||||||||| |
|
|
| T |
5346220 |
cagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatat |
5346319 |
T |
|
| Q |
115 |
atgatgaa |
122 |
Q |
| |
|
|||||||| |
|
|
| T |
5346320 |
atgatgaa |
5346327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 5098402 - 5098516
Alignment:
| Q |
15 |
cagagagtgatatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatat |
114 |
Q |
| |
|
||||| || ||||||| ||| ||||||||| ||||||||||| | ||||||| | | ||||| | ||||||||| ||||||||||||||||| ||| |
|
|
| T |
5098402 |
cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat |
5098501 |
T |
|
| Q |
115 |
atgatgaaccaattg |
129 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
5098502 |
atgatgaacaaattg |
5098516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 5100912 - 5100812
Alignment:
| Q |
25 |
tatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaacc |
124 |
Q |
| |
|
|||||| ||| ||||| ||| ||||||||||| | |||||||| | | ||||| | ||||||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
5100912 |
tatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacc |
5100813 |
T |
|
| Q |
125 |
a |
125 |
Q |
| |
|
| |
|
|
| T |
5100812 |
a |
5100812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 5136013 - 5135913
Alignment:
| Q |
25 |
tatcaaatatggaacctggtgacaaagtggagatagttgttgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaacc |
124 |
Q |
| |
|
|||||| ||| ||||| ||| ||||||||||| | |||||||| | | ||||| | ||||||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
5136013 |
tatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacc |
5135914 |
T |
|
| Q |
125 |
a |
125 |
Q |
| |
|
| |
|
|
| T |
5135913 |
a |
5135913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 5065483 - 5065439
Alignment:
| Q |
85 |
ttgtgacgaagacagcagtttatctcatatatgatgaaccaattg |
129 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
5065483 |
ttgtgaagaggacaacagtttatctcatatatgatgaaccaattg |
5065439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 5688940 - 5688894
Alignment:
| Q |
82 |
tcattgtgacgaagacagcagtttatctcatatatgatgaaccaatt |
128 |
Q |
| |
|
||||||||| ||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
5688940 |
tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaatt |
5688894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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