View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7931_low_17 (Length: 231)
Name: NF7931_low_17
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 44798358 - 44798157
Alignment:
| Q |
18 |
gttgtttgttaatggaagatgataatgtgttccgctgtgaattgggggcttagggattttgagaaattcaacaaaccctaagccccaattcacacttatc |
117 |
Q |
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| T |
44798358 |
gttgtttgttaatggaagatgataatgtgttccgctgtgaattgggggcttagggattttgagaaattgaacaaaccctaagccccaattcacacttatc |
44798259 |
T |
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| Q |
118 |
actaatttcttctataaatatcataattcataattacttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcctccttcgttctctg |
217 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44798258 |
actaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcctccttcgtcctctg |
44798159 |
T |
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| Q |
218 |
ct |
219 |
Q |
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|| |
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| T |
44798158 |
ct |
44798157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 35161751 - 35161940
Alignment:
| Q |
18 |
gttgtttgttaatggaagatgataatgtgttccgct---gtgaattgggggcttagggattttgagaaattcaacaaaccctaagccccaattcacactt |
114 |
Q |
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| T |
35161751 |
gttgtttgttaatggaagatgataatgtgttccactttagagaatt-ggggcttagggattttgagtaattgaacaaaccctaagccccaattcacactt |
35161849 |
T |
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| Q |
115 |
atcactaatttcttctataaatatcataattcataattacttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcctccttcgt |
211 |
Q |
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| T |
35161850 |
atcactaatttcttctataaatatcataattcataat------ttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgt |
35161940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 44631292 - 44631177
Alignment:
| Q |
104 |
aattcacacttatcactaatttcttctataaatatcataattcataattacttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcc |
203 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44631292 |
aattcacacttatcactaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcc |
44631193 |
T |
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| Q |
204 |
tccttcgttctctgct |
219 |
Q |
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| T |
44631192 |
tccttcgtcctctgct |
44631177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 39840046 - 39840149
Alignment:
| Q |
19 |
ttgtttgttaatggaagatgataat---gtgttccgctgt---gaattgggggcttagggattttgagaaattcaacaaaccctaagccccaattcacac |
112 |
Q |
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| T |
39840046 |
ttgtttgttaatggaagatgataataatgtgttccactgtagagaattgtgg-cttagggattttgagaaattgaacaaaccctaagccccaattcacac |
39840144 |
T |
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| Q |
113 |
ttatc |
117 |
Q |
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||||| |
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| T |
39840145 |
ttatc |
39840149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 39844963 - 39845024
Alignment:
| Q |
26 |
ttaatggaagatgataatgtgttccgctgt---gaattgggggcttagggattttgagaaatt |
85 |
Q |
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| T |
39844963 |
ttaatggaagatgataatgtgttccactgtagagaatt-ggggcttagggattttgagaaatt |
39845024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 39840176 - 39840227
Alignment:
| Q |
145 |
tcataattacttcttctttattattctctctcagacgtacatcaaaaaatgc |
196 |
Q |
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| T |
39840176 |
tcataattggttcttctttcttattctctctcagacgtacgtcaaaaaatgc |
39840227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 39845062 - 39845111
Alignment:
| Q |
145 |
tcataattacttcttctttattattctctctcagacgtacatcaaaaaatgc |
196 |
Q |
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|||||||| |||||||||| ||||||| || |||||||||||||||||||| |
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| T |
39845062 |
tcataattgcttcttctttcttattctttc--agacgtacatcaaaaaatgc |
39845111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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