View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7931_low_18 (Length: 229)
Name: NF7931_low_18
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 29357552 - 29357355
Alignment:
| Q |
13 |
ttattctctatattcatttgtaagtggctatttaggaagcaatgttaatggaaatattgtaacaaccaagatgggaaactaaggagtggaaaaaatggag |
112 |
Q |
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| T |
29357552 |
ttattctctatatttatttgtaagtggctatttaggaagcaatgttaatggaaatattgtaacaaccaagatgggaaattaaggagtggaaaaaatggag |
29357453 |
T |
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| Q |
113 |
ctgaaaagattagcgttagtatatttcctaaaaacaaaaagattggtattagtataatagcttatgtttaagagctgctacattaccattaatcaagac |
211 |
Q |
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| T |
29357452 |
ctgaaaagattggcgttagtatatttcctaaaaa-aaaaagattggtattagtataatagtttatgtttaagagctgctacattaccattaatcaagac |
29357355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 29357312 - 29357250
Alignment:
| Q |
148 |
aaaaagattggtattagtataata-gcttatgtttaagagctgctacattaccattaatcaagac |
211 |
Q |
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| T |
29357312 |
aaaatgattggtattagtataataagtttatgtttaagagctgctacat--ccattaatcaagac |
29357250 |
T |
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