View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7931_low_3 (Length: 558)

Name: NF7931_low_3
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7931_low_3
NF7931_low_3
[»] chr7 (8 HSPs)
chr7 (220-557)||(477865-478202)
chr7 (10-217)||(477623-477830)
chr7 (265-400)||(28195314-28195448)
chr7 (320-396)||(21978934-21979010)
chr7 (504-551)||(28195181-28195228)
chr7 (435-521)||(21979060-21979146)
chr7 (435-551)||(33164410-33164532)
chr7 (453-531)||(34673618-34673696)
[»] chr8 (4 HSPs)
chr8 (321-551)||(37436527-37436763)
chr8 (266-399)||(3372097-3372230)
chr8 (287-358)||(3587132-3587200)
chr8 (265-374)||(42284160-42284271)
[»] chr1 (6 HSPs)
chr1 (274-515)||(35812105-35812347)
chr1 (300-534)||(12429175-12429407)
chr1 (294-487)||(20990292-20990484)
chr1 (295-399)||(12698908-12699012)
chr1 (295-355)||(8835242-8835300)
chr1 (288-372)||(15386398-15386482)
[»] scaffold0025 (1 HSPs)
scaffold0025 (266-551)||(36746-37033)
[»] chr5 (4 HSPs)
chr5 (266-551)||(408083-408366)
chr5 (465-551)||(41485205-41485291)
chr5 (320-373)||(22615150-22615202)
chr5 (320-360)||(13575695-13575735)
[»] chr2 (4 HSPs)
chr2 (426-525)||(45224838-45224940)
chr2 (421-551)||(13693837-13693967)
chr2 (490-551)||(41454392-41454453)
chr2 (437-493)||(22650312-22650368)
[»] chr3 (3 HSPs)
chr3 (421-485)||(28144874-28144938)
chr3 (421-503)||(28080376-28080454)
chr3 (272-341)||(28145018-28145087)
[»] chr4 (5 HSPs)
chr4 (428-551)||(16422494-16422617)
chr4 (266-400)||(44203591-44203728)
chr4 (444-526)||(44203784-44203866)
chr4 (320-399)||(33818875-33818954)
chr4 (314-350)||(28201397-28201433)
[»] scaffold0215 (1 HSPs)
scaffold0215 (266-400)||(24751-24885)
[»] chr6 (4 HSPs)
chr6 (266-400)||(16358744-16358877)
chr6 (266-400)||(18849561-18849695)
chr6 (421-515)||(22717522-22717616)
chr6 (325-394)||(22717425-22717494)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 220 - 557
Target Start/End: Original strand, 477865 - 478202
Alignment:
Q  220 gggtaccgactaccggtacaagaatatggcaatttttnnnnnnnnttaaggtacgggtacatccataaaatcttgagttttgttatataatatctaacat 319  Q
    |||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  477865 gggtaccgactaccggtacaagaatatggcaatttttaaaaaaaattaaggtatgggtacatccataaaatcttgagttttgttatataatatctaacat 477964  T
Q  320 gagagctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttacaacaacnnnnnnnctcatatgcatg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||| |    
T  477965 gagagctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttacaacagcaaaaaaactcatatgcacg 478064  T
Q  420 cataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtg 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  478065 cataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtg 478164  T
Q  520 tacccggtacgggtacttcacctttttacaagcgctca 557  Q
    ||||||||||||||||||||||||||||||||||||||    
T  478165 tacccggtacgggtacttcacctttttacaagcgctca 478202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 477623 - 477830
Alignment:
Q  10 atggacatcaatttacaatgcgagaatgccaatgaagcaaaggtagagatgcaatcactttttgccgatgtttcattaatttgaccaattggatatatat 109  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  477623 atggatatcaatttacaatgcaagaatgccaatgaagcaaaggtagagatgcaatcactttttgccgatgtttcattaatttgaccaattggatatatat 477722  T
Q  110 aacgaagcctcatccgcttagtggatgcggctacatggatctcgagatgcaagaatccctattatgatttaactttaaaagataaattatttacctccga 209  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  477723 aacgaagcctcatccgattagtggatgcggctacatggatctcgagatgcaagaatccctattatgatttaactttaaaagataaattatttacctccga 477822  T
Q  210 atctatgt 217  Q
    ||||||||    
T  477823 atctatgt 477830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 265 - 400
Target Start/End: Complemental strand, 28195448 - 28195314
Alignment:
Q  265 ttaaggtacgggtacatccataaaatcttgagttttgttatataatatctaacatgagagctaaattcttcaatttacaacaaaag-catcacgataaga 363  Q
    ||||||||| ||| | || | |||||| ||||||||||||||||||||  ||||||||| ||||||||||||| || ||||||||  |||||| |||  |    
T  28195448 ttaaggtacaggtgcgtcaagaaaatcatgagttttgttatataatat--aacatgagacctaaattcttcaactttcaacaaaaaacatcacaatagaa 28195351  T
Q  364 gtttaaaaatttgaaaattagtgttggttacaacaac 400  Q
    ||||||||| | ||||||||| |||||||||||||||    
T  28195350 gtttaaaaagtcgaaaattagagttggttacaacaac 28195314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 21978934 - 21979010
Alignment:
Q  320 gagagctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttacaa 396  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||| ||||||||||  |||||| |||||||||||||||    
T  21978934 gagagataaatccttcaatttacaacaaaaacatcatgataaaagtttaaaaagctgaaaactagtgttggttacaa 21979010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 28195228 - 28195181
Alignment:
Q  504 acgagtaccgtatgtgtacccggtacgggtacttcacctttttacaag 551  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  28195228 acgagtaccgtatgcgtacccggtacgagtacttcacctttttacaag 28195181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 521
Target Start/End: Original strand, 21979060 - 21979146
Alignment:
Q  435 tcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgta 521  Q
    ||||||||||| | ||||||||| |||| ||| || ||||| ||||||||||||||||| ||  ||||||  |||||||||||||||    
T  21979060 tcatattaatacataagagaaagccacattttccactcacaatagaataatgagcaaaaatggagtaccaaaagtaccgtatgtgta 21979146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 551
Target Start/End: Original strand, 33164410 - 33164532
Alignment:
Q  435 tcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgt------gtacccggta 528  Q
    ||||||| || || ||||||||| || || ||||| ||||| || |||| ||||||||| ||  ||||||||||||||||| ||      ||||||||||    
T  33164410 tcatattgatgtataagagaaagccaaaaatttcactcacattacaatattgagcaaaaatggagtaccacgagtaccgtacgtccgtacgtacccggta 33164509  T
Q  529 cgggtacttcacctttttacaag 551  Q
    |||| ||||||||  ||||||||    
T  33164510 cgggcacttcaccactttacaag 33164532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 531
Target Start/End: Original strand, 34673618 - 34673696
Alignment:
Q  453 gaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgg 531  Q
    |||||||||| |||||| ||||| |||||||||||| || | ||  ||| ||||||||||||| |||||  ||||||||    
T  34673618 gaaagtcacatttttcactcacaatagaataatgagaaataatggagtagcacgagtaccgtacgtgtattcggtacgg 34673696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 321 - 551
Target Start/End: Original strand, 37436527 - 37436763
Alignment:
Q  321 agagctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttacaacaacnnnnnnn-----ctcatatg 415  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||||||||             ||||||||    
T  37436527 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatg 37436626  T
Q  416 catgcataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagc-aaaattgatgtaccacgagtaccgt 514  Q
    ||   |||||| |||||| ||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| |||| ||| |||||| ||||||  |    
T  37436627 cacatataacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtaccatgagtacaat 37436726  T
Q  515 atgtgtacccggtacgggtacttcacctttttacaag 551  Q
    || ||| | ||||| ||||||||||||||||||||||    
T  37436727 atatgttctcggtatgggtacttcacctttttacaag 37436763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 3372097 - 3372230
Alignment:
Q  266 taaggtacgggtacatccataaaatcttgagttttgttatataatatctaacatga--gagctaaattcttcaatttacaacaaaagcatcacgataaga 363  Q
    ||||| |||||||| || |||||||| | |||||||| ||| |||||  |||||||  ||| |||||||||||||| | ||||| |  |||||  ||  |    
T  3372097 taagggacgggtacgtcaataaaatcataagttttgtcatagaatat--aacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaa 3372194  T
Q  364 gtttaaaaatttgaaaattagtgttggttacaacaa 399  Q
    ||||||||||| |||| |||| ||||||||||||||    
T  3372195 gtttaaaaattcgaaatttagagttggttacaacaa 3372230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 3587200 - 3587132
Alignment:
Q  287 aaatcttgagttttgttatataatatctaacatgagagctaaattcttcaatttacaacaaaagcatcacga 358  Q
    ||||| ||| ||||||||||||||||  ||||||||||||||||| ||||| ||||||||||| || |||||    
T  3587200 aaatcatgaattttgttatataatat--aacatgagagctaaatt-ttcaacttacaacaaaaacaacacga 3587132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 42284160 - 42284271
Alignment:
Q  265 ttaaggtacggg-tacatccataaaat-cttgagttttgttatataatatctaacatgagagctaaattcttcaatttacaacaaaagcatcacgataag 362  Q
    |||||||||||| |||||||||||||  |  ||| |||||||||||| ||  || |  ||||||||||||||||||| ||| ||||| || ||| ||||     
T  42284160 ttaaggtacggggtacatccataaaaaacacgagatttgttatataaaataaaataaaagagctaaattcttcaattcacagcaaaaacaacacaataaa 42284259  T
Q  363 agtttaaaaatt 374  Q
    ||||||||||||    
T  42284260 agtttaaaaatt 42284271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 274 - 515
Target Start/End: Original strand, 35812105 - 35812347
Alignment:
Q  274 gggtacatccataaaatcttgagttttgttatataatatctaacatgagag--ctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaa 371  Q
    |||||| || |||||||| ||||||||||||||||||||  ||||||||||  || ||||||||||||||||||||||  || ||||||| |||||||||    
T  35812105 gggtacgtcaataaaatcatgagttttgttatataatat--aacatgagagagctgaattcttcaatttacaacaaaaatattacgataaaagtttaaaa 35812202  T
Q  372 atttgaaaattagtgttggttacaacaac-nnnnnnnctcatatgcatgcataacactatattatcatattaatatacaagagaaagtcacaattttcat 470  Q
    | | ||||| ||| |||||||||||||||        |||| |||||   | ||||||||||| |||||||||| || |||||| || ||||||||| |     
T  35812203 agtcgaaaactagagttggttacaacaacaaataaaactcaaatgcacatacaacactatattgtcatattaatctataagagagagccacaatttttac 35812302  T
Q  471 tcacagtagaataatgagcaaaattgatgtaccacgagtaccgta 515  Q
    ||||| ||||||||||||||||| ||  ||| |||||||||||||    
T  35812303 tcacaatagaataatgagcaaaaatggagtatcacgagtaccgta 35812347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 300 - 534
Target Start/End: Complemental strand, 12429407 - 12429175
Alignment:
Q  300 tgttatataatatctaacatgagag--ctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttacaac 397  Q
    |||||||||||||  ||||||||||  ||||||||||| ||||||| ||||| ||||||||||| |||||||||| | ||||||||  |||||||| |||    
T  12429407 tgttatataatat--aacatgagagggctaaattcttctatttacatcaaaaacatcacgataaaagtttaaaaagtcgaaaattaaagttggttataac 12429310  T
Q  398 aacnnnnnnnctcatatgcatgcataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattga 497  Q
    |||       |||  |||||   |||| |||| ||||||||||  ||||| |||||||||  |||||||||| ||||  ||||||||| ||||||| ||     
T  12429309 aacaaaaaaactc--atgcacatataatactacattatcatatgcatatataagagaaagctacaattttcactcaccatagaataattagcaaaaatgg 12429212  T
Q  498 tgtaccacgagtaccgtatgtgtacccggtacgggta 534  Q
     ||||||| ||||||||| | |||||| ||| |||||    
T  12429211 agtaccacaagtaccgtacgcgtacccagtatgggta 12429175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 294 - 487
Target Start/End: Original strand, 20990292 - 20990484
Alignment:
Q  294 gagttttgttatataatatctaacatgaga--gctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggt 391  Q
    |||||||||||||||||||  |||||||||  |||||||||||||||||||||||||| |||||  |||| | |||||||| |||||||| || ||||||    
T  20990292 gagttttgttatataatat--aacatgagaaagctaaattcttcaatttacaacaaaaccatcataataaaattttaaaaagttgaaaatcagagttggt 20990389  T
Q  392 tacaacaacnnnnnnnctcatatgcatgcat-aacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatga 487  Q
    | |||||||       |||  |||||  ||| || |||||||||||||||||||||| || |||||| |||||||||||  |||| ||||| |||||    
T  20990390 ttcaacaacaaaaaaactc--atgcacacataaatactatattatcatattaatatataaaagaaagccacaattttcacccacaatagaaaaatga 20990484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 12699012 - 12698908
Alignment:
Q  295 agttttgttatataatatctaacatgagag--ctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggtt 392  Q
    ||||||||||||||||||  ||||||||||  |||| ||||||||||||| | |||| || || ||||| |||||||||| |  |||||||| ||||| |    
T  12699012 agttttgttatataatat--aacatgagagagctaagttcttcaatttacgataaaaacagcaagataaaagtttaaaaactcaaaaattagagttggat 12698915  T
Q  393 acaacaa 399  Q
    |||||||    
T  12698914 acaacaa 12698908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 8835242 - 8835300
Alignment:
Q  295 agttttgttatataatatctaacatgagagctaaattcttcaatttacaacaaaagcatca 355  Q
    ||||| ||||||||||||  ||||||||||||||| | ||||||||||||||||| |||||    
T  8835242 agtttagttatataatat--aacatgagagctaaaatgttcaatttacaacaaaaacatca 8835300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 15386398 - 15386482
Alignment:
Q  288 aatcttgagttttgttatataatatctaacatgagagc--taaattcttcaatttacaacaaaagcatcacgataagagtttaaaaa 372  Q
    |||| |||||||||||||| |||||  |||||||||    ||| |||||||||||||||||||| |||||| |||| |||| |||||    
T  15386398 aatcatgagttttgttatacaatat--aacatgagacaattaagttcttcaatttacaacaaaaacatcacaataaaagttaaaaaa 15386482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 266 - 551
Target Start/End: Complemental strand, 37033 - 36746
Alignment:
Q  266 taaggtacgggtacatccataaaatcttgagttttgttatataatatctaacatga--gagctaaattcttcaatttacaacaaaagcatcacgataaga 363  Q
    |||||||||| ||| || |||||||| | |||||||||||| |||||  |||||||  ||| |||||||||||||| |||||||||  |||||  ||| |    
T  37033 taaggtacggatacgtcaataaaatcataagttttgttatagaatat--aacatgaaagagttaaattcttcaattcacaacaaaataatcacattaata 36936  T
Q  364 gtttaaaaatttgaaaattagtgttggttacaacaacnnnnnnnctcatatgcatgcataacactatattatcatattaatatacaagagaaagtcacaa 463  Q
    ||||||||| |||||| ||||   |||||||||||||       |||| | |||   |||||| ||||||||||||||||| || | ||||||| |||||    
T  36935 gtttaaaaagttgaaatttaga--tggttacaacaacaaagaaactcaaacgcacaaataacattatattatcatattaatgtataggagaaagccacaa 36838  T
Q  464 ttttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgta----tgtgtacccggtacgggtacttcacctttttacaag 551  Q
     || || ||||| || |||| ||||||||| ||  |||||||||||||| ||    || ||||||||||| ||||||||||| |||||||||    
T  36837 attccactcacaatacaatattgagcaaaactggagtaccacgagtaccatacgggtgagtacccggtacaggtacttcaccgttttacaag 36746  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 266 - 551
Target Start/End: Complemental strand, 408366 - 408083
Alignment:
Q  266 taaggtacgggtacatccataaaatcttgagttttgttatataatatctaacatgagagc--taaattcttcaatttacaacaaaagcatcacgataaga 363  Q
    |||||||||||||| || |||||||| | |||||||||||| |||||  ||||||| ||   |||||||||||||| |||||||||  ||||| || |||    
T  408366 taaggtacgggtacgtcaataaaatcataagttttgttatagaatat--aacatgaaagaattaaattcttcaattcacaacaaaaaaatcac-atcaga 408270  T
Q  364 -gtttaaaaatttgaaaattagtgttggttacaacaacnnnnnnnctcatatgcatgcataacactatattatcatattaatatacaagagaaagtcaca 462  Q
     ||||||||| |  ||| |||| || ||||||||||||       |||| | |||   |||| | |||||| |  ||||||| || ||||||||| ||||    
T  408269 agtttaaaaagtccaaatttagagtcggttacaacaacaaagaaactcaaacgcacaaataatagtatattgt--tattaatgtataagagaaagccaca 408172  T
Q  463 attttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaag 551  Q
    | ||||| ||||| || |||||||||||||| ||  ||||||||||||||||| | |||||| |||| ||||||||||| |||||||||    
T  408171 aatttcactcacaatacaataatgagcaaaaatggagtaccacgagtaccgtacgcgtacccagtaccggtacttcaccgttttacaag 408083  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 465 - 551
Target Start/End: Original strand, 41485205 - 41485291
Alignment:
Q  465 tttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaag 551  Q
    ||||||||| |||| ||||||||| |||||||| || |||| | ||||||| | ||||||||||||||||||||| | |||||||||    
T  41485205 tttcattcagagtacaataatgaggaaaattgaagtgccaccaataccgtacgcgtacccggtacgggtacttcatcattttacaag 41485291  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 22615150 - 22615202
Alignment:
Q  320 gagagctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaat 373  Q
    |||||||||||| ||||||| ||||||||| |||||| |||| |||||||||||    
T  22615150 gagagctaaattgttcaattcacaacaaaa-catcactataaaagtttaaaaat 22615202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 13575695 - 13575735
Alignment:
Q  320 gagagctaaattcttcaatttacaacaaaagcatcacgata 360  Q
    ||||||||||||||| || ||||||||||| ||||||||||    
T  13575695 gagagctaaattctttaacttacaacaaaaacatcacgata 13575735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 426 - 525
Target Start/End: Complemental strand, 45224940 - 45224838
Alignment:
Q  426 actatattatcatatta---atatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtac 522  Q
    |||||||||||||||||   ||||| ||||||||| ||||| ||||| ||||| || |||||||||||||| ||  ||||||||||||||||| ||||||    
T  45224940 actatattatcatattattaatatataagagaaagccacaaatttcactcacaatacaataatgagcaaaaatggagtaccacgagtaccgtacgtgtac 45224841  T
Q  523 ccg 525  Q
    |||    
T  45224840 ccg 45224838  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 551
Target Start/End: Original strand, 13693837 - 13693967
Alignment:
Q  421 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgt 520  Q
    |||||| |||||| || ||||||| || | ||||||| || || ||||| ||||| ||  ||||||| ||||| |   ||| || |||||||||||  ||    
T  13693837 ataacattatattgtcctattaatgtataggagaaagccataaatttcactcacaataatataatgaacaaaaatagagtatcaagagtaccgtatccgt 13693936  T
Q  521 acccggtacgggtacttcacctttttacaag 551  Q
    ||||| ||||||||||||||| |||||||||    
T  13693937 acccgatacgggtacttcaccgttttacaag 13693967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 551
Target Start/End: Complemental strand, 41454453 - 41454392
Alignment:
Q  490 aaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaag 551  Q
    |||| ||| ||||||||||||||||| | ||||||| ||||||||||||| | |||||||||    
T  41454453 aaaaatgaagtaccacgagtaccgtacgcgtacccgatacgggtacttcatcgttttacaag 41454392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 22650312 - 22650368
Alignment:
Q  437 atattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaa 493  Q
    ||||||||||| || ||||| |||||||||||| ||| | |||||||||||||||||    
T  22650312 atattaatatataaaagaaaatcacaattttcactcataatagaataatgagcaaaa 22650368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 485
Target Start/End: Complemental strand, 28144938 - 28144874
Alignment:
Q  421 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataat 485  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||    
T  28144938 ataatactatattatcatattaataaataagagaaagtcacaattttcaatcacaatagaataat 28144874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 503
Target Start/End: Complemental strand, 28080454 - 28080376
Alignment:
Q  421 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtacc 503  Q
    |||| |||||||||||||||    ||| ||||||||||||||||||||| ||||| ||||||||||| ||||| ||| |||||    
T  28080454 ataaaactatattatcatat----atataagagaaagtcacaattttcactcacaatagaataatgaacaaaaatgaagtacc 28080376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 28145087 - 28145018
Alignment:
Q  272 acgggtacatccataaaatcttgagttttgttatataatatctaacatgagag--ctaaattcttcaattta 341  Q
    |||||||| || |||||||| ||||||||| ||||||||||  ||||||||||  |||||||||||||||||    
T  28145087 acgggtacgtcaataaaatcatgagttttgctatataatat--aacatgagagggctaaattcttcaattta 28145018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 428 - 551
Target Start/End: Original strand, 16422494 - 16422617
Alignment:
Q  428 tatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggt 527  Q
    |||||| |||||||| | || ||||||| |||| || ||||| ||||| || ||||||||| |||| ||| ||||||||||||| ||| | ||| ||| |    
T  16422494 tatattgtcatattagtgtataagagaatgtcataaatttcactcacaatacaataatgagaaaaaatgaagtaccacgagtactgtacgcgtatccgat 16422593  T
Q  528 acgggtacttcacctttttacaag 551  Q
    |||||||||||| | |||||||||    
T  16422594 acgggtacttcatcgttttacaag 16422617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 400
Target Start/End: Original strand, 44203591 - 44203728
Alignment:
Q  266 taaggtacgggtacatccataaaatcttgagttttgttatataata-tctaacatg--agagctaaattcttcaatttacaacaaaagcatcacgataag 362  Q
    |||||||||| ||| || |||||||| | ||||||||||||  ||| | |||||||  |||| |||||||||||| | ||||||||| || ||| ||||     
T  44203591 taaggtacggatacgtcaataaaatcataagttttgttatactataatataacatggaagagataaattcttcaactgacaacaaaaacagcacaataaa 44203690  T
Q  363 agtttaaaaatttgaaaattagtgttggttacaacaac 400  Q
    | || ||||| |||||| |||| |||||||||||||||    
T  44203691 aattaaaaaagttgaaatttagagttggttacaacaac 44203728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 444 - 526
Target Start/End: Original strand, 44203784 - 44203866
Alignment:
Q  444 tatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccgg 526  Q
    |||||||||| ||| ||||| ||||| |||||||| |||||||||||||| ||  ||| ||||||||||||| | ||||||||    
T  44203784 tatacaagagtaagccacaaatttcactcacagtacaataatgagcaaaaatggagtagcacgagtaccgtacgcgtacccgg 44203866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 33818954 - 33818875
Alignment:
Q  320 gagagctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttacaacaa 399  Q
    ||||||||||||||||||||| |||||||| ||||| |  || | |||||||| | ||| ||||| ||||| ||||||||    
T  33818954 gagagctaaattcttcaatttgcaacaaaaacatcaagccaaaaatttaaaaagtagaatattagagttggctacaacaa 33818875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 28201433 - 28201397
Alignment:
Q  314 taacatgagagctaaattcttcaatttacaacaaaag 350  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  28201433 taacatgagagctaaattgttcaattcacaacaaaag 28201397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 400
Target Start/End: Original strand, 24751 - 24885
Alignment:
Q  266 taaggtacgggtacatccataaaatcttgagttttgttatataatatctaacatga--gagctaaattcttcaatttacaacaaaagcatcacgataaga 363  Q
    ||||| |||||||| || |||||||| | |||||||| ||| |||||  |||||||  ||| |||||||||||||| | ||||| |  |||||  ||  |    
T  24751 taagggacgggtacgtcaataaaatcataagttttgtcatagaatat--aacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaa 24848  T
Q  364 gtttaaaaatttgaaaattagtgttggttacaacaac 400  Q
    ||||||||||| |||| |||| |||||||||||||||    
T  24849 gtttaaaaattcgaaatttagagttggttacaacaac 24885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 400
Target Start/End: Original strand, 16358744 - 16358877
Alignment:
Q  266 taaggtacgggtacatccataaaatcttgagttttgttatataatatctaacatga--gagctaaattcttcaatttacaacaaaagcatcacgataaga 363  Q
    |||||||||||||| || |||||||| | |||||||||||| ||||  ||||||||  ||| |||||||||||||| | || || |  |||||  ||  |    
T  16358744 taaggtacgggtacgtcaataaaatcataagttttgttatagaata--taacatgaaggagttaaattcttcaattcataa-aagaaaatcacattagaa 16358840  T
Q  364 gtttaaaaatttgaaaattagtgttggttacaacaac 400  Q
    ||||||||| | |||| |||| |||||||||||||||    
T  16358841 gtttaaaaagtcgaaatttagagttggttacaacaac 16358877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 400
Target Start/End: Complemental strand, 18849695 - 18849561
Alignment:
Q  266 taaggtacgggtacatccataaaatcttgagttttgttatataatatctaacatga--gagctaaattcttcaatttacaacaaaagcatcacgataaga 363  Q
    ||||| ||| |||| || |||||||| | |||||||| ||| |||||  |||||||  ||| |||||||||||||| | ||||| |  |||||  ||  |    
T  18849695 taagggacgagtacgtcaataaaatcataagttttgtcatagaatat--aacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaa 18849598  T
Q  364 gtttaaaaatttgaaaattagtgttggttacaacaac 400  Q
    ||||||||||| |||| |||| |||||||||||||||    
T  18849597 gtttaaaaattcgaaatttagagttggttacaacaac 18849561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 515
Target Start/End: Original strand, 22717522 - 22717616
Alignment:
Q  421 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgta 515  Q
    |||| ||||| | |||| || |||||| |||||||| ||||||||||||| |||| ||||||| |||| |||| |   ||| |||||||||||||    
T  22717522 ataatactatgtcatcaaatcaatatataagagaaaatcacaattttcatccacaatagaatactgaggaaaaatagggtatcacgagtaccgta 22717616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 22717425 - 22717494
Alignment:
Q  325 ctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttac 394  Q
    ||||||||||||||| ||| ||||| ||||| ||||| |||||||||| |  |||||||| ||| |||||    
T  22717425 ctaaattcttcaattcacagcaaaatcatcatgataaaagtttaaaaaataaaaaattagagttagttac 22717494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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