View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7931_low_4 (Length: 545)
Name: NF7931_low_4
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Original strand, 43601920 - 43602310
Alignment:
| Q |
14 |
cccgcgcatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcacgtgcatcacgtgccagagctattaatttatagaattg |
113 |
Q |
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| T |
43601920 |
cccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcacgtgcatcacgtgccagagctattaatttatagaatcg |
43602019 |
T |
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| Q |
114 |
ttatccacttaacttaaccagggtagaaaaatttggtgacacatgtattggctttggatgctttgattcttactgattaattaaagagaaattagtcttc |
213 |
Q |
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| T |
43602020 |
ttatccacttaacttaaccagggtagaaaaatttggtga-acatgtattggctttggatgctttgattcttactgattaattaaagagaaattagtcttc |
43602118 |
T |
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| Q |
214 |
ttctgctgaagtta-ttgattgcctttacctttagctagagaattgcgcatacatatgtacggagatttcacattgaatatgtgtctaatgtctgacatg |
312 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
43602119 |
ttctgctgaagttagttgattgcctttacctttagctagagaattgcgcatacatatgtaccgagatttcacattgaatatgtgtctaatatctgacatg |
43602218 |
T |
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| Q |
313 |
tgttagtgtcgtacactgatgcatgggttccattcaattactttcatctttaaaattattattgatgccaacactcagcatgtgtttgtatt |
404 |
Q |
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| T |
43602219 |
tgttagtgtcgtacactgatgcatgggttccattcaattactttcatctttaaaattattattgatgccaacactcagcatgtgtttgtatt |
43602310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 396 - 545
Target Start/End: Original strand, 43602495 - 43602644
Alignment:
| Q |
396 |
gtttgtattagtgctatataggccaagagtagacactcttatatcaaaagcaatagcatgtgcttgtattctcaagtttagtcacttctcatgagtttac |
495 |
Q |
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| T |
43602495 |
gtttgtattagtgctatataggccaagagtagacactcttatatcaaatgcaatagcatgtgcttgtattctcaagtttagtcacttctcatcagtttac |
43602594 |
T |
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| Q |
496 |
ttatttcactagcagctgccatggatatcaaaagcgagtgcaattctagc |
545 |
Q |
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| T |
43602595 |
ttatttcactagcagctgccatggatatcaaaagcgagtgcaattctagc |
43602644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 22436294 - 22436220
Alignment:
| Q |
14 |
cccgcgcatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcacgtgcatcacgtg |
88 |
Q |
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| T |
22436294 |
cccgcacatgataaagttgcctcttataacggttccaattgacaataatttgcggtctgtcacatgcatcacgtg |
22436220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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