View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7931_low_5 (Length: 517)

Name: NF7931_low_5
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7931_low_5
NF7931_low_5
[»] chr8 (6 HSPs)
chr8 (1-403)||(13073849-13074255)
chr8 (177-328)||(5949986-5950136)
chr8 (260-369)||(41940029-41940141)
chr8 (5-170)||(41939780-41939955)
chr8 (120-162)||(5949911-5949953)
chr8 (166-229)||(41939969-41940032)
[»] chr4 (8 HSPs)
chr4 (1-328)||(21121694-21122040)
chr4 (181-364)||(25100390-25100574)
chr4 (1-170)||(53813569-53813740)
chr4 (249-347)||(53813832-53813932)
chr4 (110-162)||(25100612-25100664)
chr4 (236-324)||(44206908-44206995)
chr4 (5-103)||(45199336-45199435)
chr4 (120-153)||(35259921-35259954)
[»] chr5 (2 HSPs)
chr5 (4-369)||(12566915-12567284)
chr5 (85-159)||(18864216-18864290)
[»] chr1 (8 HSPs)
chr1 (1-376)||(8326653-8327050)
chr1 (166-328)||(26762311-26762472)
chr1 (51-170)||(18650151-18650270)
chr1 (107-162)||(26762494-26762549)
chr1 (1-73)||(6570774-6570847)
chr1 (166-328)||(18628809-18628968)
chr1 (236-288)||(2688246-2688298)
chr1 (71-162)||(11871655-11871746)
[»] chr2 (3 HSPs)
chr2 (1-328)||(8216428-8216774)
chr2 (1-328)||(463857-464202)
chr2 (166-228)||(38002168-38002230)
[»] chr6 (5 HSPs)
chr6 (54-328)||(32191313-32191606)
chr6 (261-347)||(30892255-30892343)
chr6 (189-316)||(31304090-31304215)
chr6 (106-170)||(30892130-30892194)
chr6 (123-162)||(592685-592724)
[»] chr3 (5 HSPs)
chr3 (181-328)||(51663809-51663955)
chr3 (1-155)||(23229212-23229369)
chr3 (9-153)||(28421454-28421601)
chr3 (107-170)||(51663716-51663779)
chr3 (121-153)||(23006158-23006190)
[»] chr7 (4 HSPs)
chr7 (236-318)||(11203219-11203301)
chr7 (91-152)||(20118009-20118070)
chr7 (122-162)||(28002982-28003022)
chr7 (120-170)||(31727454-31727504)
[»] scaffold0174 (1 HSPs)
scaffold0174 (236-288)||(30776-30828)


Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 13073849 - 13074255
Alignment:
Q  1 aagccaaagagaaaa--tataataaataaaaacaaacaggtataaagatcgaggacattggacctaacctaggaaaactcagatgggaatacatcgtgaa 98  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| | |||||||||| || ||    
T  13073849 aagccaaagagaaaaaatataataaataaaaacaaataggtataaagatcggggacattggacctgacctaggaaaactcaaacgggaatacattgtaaa 13073948  T
Q  99 aaatctatccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaaaccatgttacaaaaaagtgtgaaaagtg 198  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13073949 aaatctatccaagtggtacagctgtaatctatcataacaaaaatacactaatcactgacacaacgcagcgaaaccatgttacaaaaaagtgtgaaaagtg 13074048  T
Q  199 gacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagc 298  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13074049 gacatccgcttaaaacagttagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaaatgccaacaaccccctgaatcaacagc 13074148  T
Q  299 agacatataatgctctttcgaacaaacaactcct--aaactcagatcgaggataagttcaatgcgtcataaactagacccattttcatgatatttgacaa 396  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  13074149 agacatataatgctctttcgaacaaacaactcgtaaaaactcagatcgaggataagttcaatacgtcataaactagacccatttttatgatatttgacaa 13074248  T
Q  397 tatgcat 403  Q
    |||||||    
T  13074249 tatgcat 13074255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 177 - 328
Target Start/End: Original strand, 5949986 - 5950136
Alignment:
Q  177 ttacaaaaaagtgtgaaaagtggacatccacataaaacaattagagt-ttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgc 275  Q
    ||||||||||| |||||||||| |||| | |||| |||||||| | | ||||||    | ||||||||||| |||||||||||| | ||||| |||| ||    
T  5949986 ttacaaaaaagcgtgaaaagtgaacattcgcatagaacaattaaaatattaaacct--ggcgaatggattgaccgtcaacacggtatccaattcaagagc 5950083  T
Q  276 caacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 328  Q
    | |||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  5950084 ccacaatcccctgaatcaacagcagacataaaatgctctttcgagcaaacaac 5950136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 41940029 - 41940141
Alignment:
Q  260 aaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcga-ggataagttca 356  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |||||||| | |  ||||||||||||| |||| ||||||    
T  41940029 aaaccaatccaagtcccaacaaccccctgaatcaacagcaggcataaaatgctctttcgagcaaacaacgcgtaaaaactcagatcgagggatgagttca 41940128  T
Q  357 atgcgtcataaac 369  Q
    || ||||| ||||    
T  41940129 atacgtcaaaaac 41940141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 41939780 - 41939955
Alignment:
Q  5 caaagagaaaatataataaataaaaacaaacaggtataaagatcgagga---cattggacctaacctaggaaaactcagatgggaatacatcgtgaaaaa 101  Q
    ||||||||||||||||||||||||| |||||||||| |||||  ||||    ||||||| || | | ||||||||||| | ||||||||||||| |||||    
T  41939780 caaagagaaaatataataaataaaa-caaacaggtacaaagactgaggggagcattggatctgatccaggaaaactcaaacgggaatacatcgtaaaaaa 41939878  T
Q  102 tcta--------tccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa 170  Q
       |        | ||||||||||| |||||||||||| |||||||||||||||| ||| || |||||| |||||||    
T  41939879 aaaaaaaaacagttcaagtggtacaactctaatctatcctaacaaaaatacactagtcaatggcgcaactcagcgaa 41939955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 5949911 - 5949953
Alignment:
Q  120 ctctaatctatcataacaaaaatacactaatcactgacgcaac 162  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  5949911 ctctaatctatcctaacaaaaatacactaatcactgacgcaac 5949953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 41939969 - 41940032
Alignment:
Q  166 gcgaaaccatgttacaaaaaagtgtgaaaagtggacatccacataaaacaattagagtttaaac 229  Q
    ||||||||| |||||||||||  ||||||| ||||||||| |||| |||| |||||||||||||    
T  41939969 gcgaaaccaggttacaaaaaaacgtgaaaattggacatccgcatagaacagttagagtttaaac 41940032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 21122040 - 21121694
Alignment:
Q  1 aagccaaagagaaaatataataaataaaaacaaacaggtataaagatcgagga-cattggacctaacctaggaaaactcagatgggaatacatcgtgaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||  | ||  |||||||||| ||||||||||||||| | |||||||||||||||||    
T  21122040 aagccaaagagaaaatataataaataaaaacaaacaggtacaaagacgggggggcattggacctgacctaggaaaactcaaacgggaatacatcgtgaaa 21121941  T
Q  100 aatctatccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa------------------accatgttaca 181  Q
    || ||||||||||||||||||||||||||||| |||||||| || ||||||||||  |||||| |||||||                  |||| ||||||    
T  21121940 aaactatccaagtggtacagctctaatctatcctaacaaaa-taaactaatcactagcgcaacccagcgaacccgcatacgggtgcgagaccaagttaca 21121842  T
Q  182 aaaaagtg---tgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaa 278  Q
    |||||      |||||||||| ||||  |||| |||| |||||||||||||||  | ||||||||||| | |||||||||||||| |||||||||| |||    
T  21121841 aaaaaaaaacatgaaaagtgggcatctgcatagaacagttagagtttaaacta--ggcgaatggattgactgtcaacacggaaactaatccaagtgtcaa 21121744  T
Q  279 caaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 328  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  21121743 caaccccttgaatcaacagcagacataaaatgctctttcgagcaaacaac 21121694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 364
Target Start/End: Complemental strand, 25100574 - 25100390
Alignment:
Q  181 aaaaaagtgtgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaaca 280  Q
    ||||||||||||||||||||| ||| |||| |||  ||||||||||||  || | ||||||||||  |||||||||||| ||||||||||||||||||||    
T  25100574 aaaaaagtgtgaaaagtggacctccgcatagaactgttagagtttaaa--attggcgaatggattagccgtcaacacggtaaccaatccaagtgccaaca 25100477  T
Q  281 accccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcga-ggataagttcaatgcgtca 364  Q
    |||| ||| | ||||| ||  ||||  ||||||||||||||||||||  | |  ||||||||||||| |||| |||||||| |||||    
T  25100476 accctctgtaacaacaacatgcataagatgctctttcgaacaaacaaagcgtaaaaactcagatcgagggatgagttcaatacgtca 25100390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 53813569 - 53813740
Alignment:
Q  1 aagccaaagagaaaatataataaataaaaacaaacaggtataaagatcgagg-acattggacctaacctaggaa-aactcagatgggaatacatcgtgaa 98  Q
    |||||||| |||||||||||||||||||||||||||   | |||||  | || ||||||||||||||| ||||| |||  | | ||| ||||| |||||     
T  53813569 aagccaaatagaaaatataataaataaaaacaaacaaaaacaaagacagggggacattggacctaacccaggaataacctaaacggggatacaccgtgat 53813668  T
Q  99 aaatctatccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa 170  Q
    |||||| ||||||||||||| |||||||||||| ||||||| ||| ||||||||||| |||||| |||||||    
T  53813669 aaatctgtccaagtggtacaactctaatctatcctaacaaatatatactaatcactggcgcaacccagcgaa 53813740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 53813832 - 53813932
Alignment:
Q  249 cgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcgag 346  Q
    ||||||| ||| |||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| | |  ||||||||||||||    
T  53813832 cgtcaacgcggtaacccacccaagtgccaacaaccccctgaatcagcagcaaacataaaatgctctttcgaacaaacaacgcgtaaaaactcagatcgag 53813931  T
Q  347 g 347  Q
    |    
T  53813932 g 53813932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 25100664 - 25100612
Alignment:
Q  110 agtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaac 162  Q
    ||||| |||||||||| ||||| ||||||||||| ||||||||| ||||||||    
T  25100664 agtggaacagctctaaactatcctaacaaaaatatactaatcacagacgcaac 25100612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 324
Target Start/End: Original strand, 44206908 - 44206995
Alignment:
Q  236 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaa 324  Q
    ||||||||| | ||| |||||||| ||| |||||||||||||||| | | ||| ||||||||||  |||| ||||| ||||||||||||    
T  44206908 cgaatggatcgaccgccaacacggtaacaaatccaagtgccaacagctctctg-atcaacagcaagcataaaatgccctttcgaacaaa 44206995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 45199336 - 45199435
Alignment:
Q  5 caaagagaaaatataataaataaaaacaaacaggtataaaga-tcgaggacattggacctaacctaggaaaactcagatgggaatacatcgtgaaaaatc 103  Q
    |||| |||||| |||||||||||||| ||| || || ||||| | | ||||||  ||||| ||||||||||||||| |||  |||||||||||| |||||    
T  45199336 caaaaagaaaaaataataaataaaaagaaaaagatacaaagactaggggacataagacctgacctaggaaaactcaaatgaaaatacatcgtgataaatc 45199435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 35259921 - 35259954
Alignment:
Q  120 ctctaatctatcataacaaaaatacactaatcac 153  Q
    ||||||||||||||||||||||| ||||||||||    
T  35259921 ctctaatctatcataacaaaaatccactaatcac 35259954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 369
Target Start/End: Complemental strand, 12567284 - 12566915
Alignment:
Q  4 ccaaagagaaaatataataaataaaaacaaacaggtataaaga-tcgaggacattggacctaacctaggaa-aactcagatgggaatacatcgtgaaaaa 101  Q
    ||||| |||||||||||||||||||||||||||| |  ||||| | ||||||||||||||| | | ||||| |||  | | || |||||| ||||| |||    
T  12567284 ccaaaaagaaaatataataaataaaaacaaacagattcaaagactggaggacattggacctgatccaggaataaccgaaacggaaatacaacgtgataaa 12567185  T
Q  102 tctatccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaaaccatgttacaaaaaagt--gtgaaaagtgg 199  Q
     || ||||||||||||| |||||||||||| ||||||||||||||  ||||||    |||| ||||||||||| || ||||||||    ||||||| |||    
T  12567184 actgtccaagtggtacaactctaatctatcctaacaaaaatacacagatcacttggacaacccagcgaaaccaggtaacaaaaaaaaacgtgaaaattgg 12567085  T
Q  200 acatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagca 299  Q
    |||| |||| | |||||| ||||||| |||  ||| || |||||||| ||||||||| |||| ||||| ||||| |||||||||||||||||||||| ||    
T  12567084 acattcacaaagaacaat-agagttttaacc-taggcggatggattggccgtcaacatggaa-ccaattcaagtaccaacaaccccctgaatcaacaaca 12566988  T
Q  300 gacatataatgctctttcgaacaaacaactcct--aaactcagatcga-ggataagttcaatgcgtcataaac 369  Q
    | ||||||||||||||||||||||||||| | |  ||||||||||||| |||| |||||||| ||||| ||||    
T  12566987 ggcatataatgctctttcgaacaaacaacgcgtaaaaactcagatcgagggatgagttcaatacgtcagaaac 12566915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 18864290 - 18864216
Alignment:
Q  85 gaatacatcgtgaaaaatc-tatccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgc 159  Q
    ||||||||||||| ||||| |||| ||||||  || ||||||||||||||||||||||| |||| ||||| |||||    
T  18864290 gaatacatcgtgataaatcatatc-aagtggaccaactctaatctatcataacaaaaatccacttatcacggacgc 18864216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 8326653 - 8327050
Alignment:
Q  1 aagccaaagagaaaatataataaataaaaacaaacaggtataaaga---tcgagga-cattggacctaacctaggaaaactcagatgggaatacatcgtg 96  Q
    |||||||||||||||||||||||||||||||||||||||| | |||   | | ||  |||||||||| |||||||||||| || | ||||||||||||||    
T  8326653 aagccaaagagaaaatataataaataaaaacaaacaggtacacagaagttggcggggcattggacctgacctaggaaaacccaaacgggaatacatcgtg 8326752  T
Q  97 aaaaatctatccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa------------------accatgtt 178  Q
    ||||| || ||||||||||||  |||||  ||||| ||||||||| |||| ||| ||||||||||| |||||||                  |||| |||    
T  8326753 aaaaaactgtccaagtggtaccactctagactatcctaacaaaaaaacacaaatgactgacgcaacccagcgaacctgcgtccggacgcgaaaccaggtt 8326852  T
Q  179 acaaaaaagtgtgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaa 278  Q
    | ||||||  |||||||| ||||||| ||||| |||  |||||||||||||||  | ||||||||||| | |||||||||||||||||||||||||||||    
T  8326853 aaaaaaaac-gtgaaaagaggacatctacatagaacggttagagtttaaacta--ggcgaatggattgactgtcaacacggaaaccaatccaagtgccaa 8326949  T
Q  279 caaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcga-ggataagttcaatgcgtcataaactagacc 375  Q
    || ||||| ||||||||||||| |||| ||||||||||| | | |||||| | |  ||||||||||||| |||| |||||||| ||||| |||| |||||    
T  8326950 catccccccgaatcaacagcaggcataaaatgctctttcaagcgaacaacgcgtaaaaactcagatcgagggatgagttcaatacgtcagaaaccagacc 8327049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 166 - 328
Target Start/End: Complemental strand, 26762472 - 26762311
Alignment:
Q  166 gcgaaaccatgttacaaaaaagtgtgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaacca 265  Q
    |||||||||  ||||||||||| ||||||||||||||| | |||| |||||||| ||| ||||   | | ||||||||||| |||||||||||| | |||    
T  26762472 gcgaaaccagattacaaaaaagcgtgaaaagtggacattcgcatagaacaattaaagtataaaac-tcggcgaatggattggccgtcaacacggtatcca 26762374  T
Q  266 atccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 328  Q
    ||||||| ||| |||| |||||||||||||| |||||||| ||||||||||||| ||||||||    
T  26762373 atccaagagcccacaatcccctgaatcaacaacagacataaaatgctctttcgagcaaacaac 26762311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 18650151 - 18650270
Alignment:
Q  51 ggacattggacctaacctaggaaaactcagatgggaatacatcgtgaaaaatctatccaagtggtacagctctaatctatcataacaaaaatacactaat 150  Q
    |||||| |||||| |||  |||||||||| | || ||||||||||||||||||  |||||||||  |  |||||| ||||| |||||||||| |||||||    
T  18650151 ggacataggacctgacccgggaaaactcaaacggaaatacatcgtgaaaaatcagtccaagtggatccactctaacctatcctaacaaaaatccactaat 18650250  T
Q  151 cactgacgcaacgcagcgaa 170  Q
    ||| |||||||| |||||||    
T  18650251 cacagacgcaactcagcgaa 18650270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 26762549 - 26762494
Alignment:
Q  107 ccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaac 162  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  26762549 ccaagtggaacaactctaatctatcctaacaaaaatacactaatcactggcgcaac 26762494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6570774 - 6570847
Alignment:
Q  1 aagccaaagagaaaatataataaataaaaacaaacaggtataaaga-tcgaggacattggacctaacctaggaa 73  Q
    |||||||| |||||||||||||||||||||||||||| || ||||| | | ||||||||||||| ||| |||||    
T  6570774 aagccaaatagaaaatataataaataaaaacaaacagatacaaagactgggggacattggacctgacccaggaa 6570847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 328
Target Start/End: Original strand, 18628809 - 18628968
Alignment:
Q  166 gcgaaaccatgttacaaaaaagtgtgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaac-c 264  Q
    ||||||||| ||||||||||||  ||||||||| ||||| ||||| |||| ||||||| |  | ||| | ||||||||| | ||| |||||||| |||      
T  18628809 gcgaaaccaggttacaaaaaagaatgaaaagtgaacatctacatagaacatttagagtgt-gattat-ggcgaatggatcgaccgccaacacggtaacaa 18628906  T
Q  265 aatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 328  Q
    |||||||||||||||| | ||||||| ||||| ||  |||| || |||||||||| ||||||||    
T  18628907 aatccaagtgccaacagctccctgaa-caacaacaagcata-aaagctctttcgatcaaacaac 18628968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 2688246 - 2688298
Alignment:
Q  236 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctg 288  Q
    ||||||||||| ||| |||||||| ||| |||||||| ||||||||| |||||    
T  2688246 cgaatggattgaccgccaacacggtaacaaatccaagcgccaacaactccctg 2688298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 11871746 - 11871655
Alignment:
Q  71 gaaaactcagatgggaatacatcgtgaaaaatctatccaagtgg-tacagctctaatctatcataacaaaaatacactaatcactgacgcaac 162  Q
    ||||||||| ||| ||||| ||||||| ||||| | | |||||| || | |||||||||||| |||||||||| || ||||||||| ||||||    
T  11871746 gaaaactcaaatgtgaatatatcgtgataaatcaacctaagtggatata-ctctaatctatcctaacaaaaattcaataatcactggcgcaac 11871655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 8216428 - 8216774
Alignment:
Q  1 aagccaaagagaaaatataataaataaaaacaaacaggtataaagatcgagga-cattggacctaacctaggaa-aactcagatgggaatacatcgtgaa 98  Q
    |||| ||| |||||||||||||||||||||||||||| || |||||| | ||| |||||| ||| ||| | ||  ||| || | ||  |||||| ||||     
T  8216428 aagctaaatagaaaatataataaataaaaacaaacagatacaaagattggggagcattgggcctgacccaagattaacccaaacggagatacattgtgat 8216527  T
Q  99 aaatctatccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa------------------accatgttac 180  Q
    |||||| || |||||||||| |||||||||||| |||||||||||||||| ||||||||||||| || ||||                  |||| |||||    
T  8216528 aaatctgtcaaagtggtacaactctaatctatcctaacaaaaatacactagtcactgacgcaacccaacgaacccgcgtacgggcgtgaaaccaagttac 8216627  T
Q  181 aaaaa--agtgtgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaa 278  Q
    |||||  |  ||||||||||||||||| |||| |||| ||| |||||  |  |||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  8216628 aaaaacaaacgtgaaaagtggacatccgcatagaacagttaaagttttgaa-ataggcgaatggattggccgtcaacacggaa-ccaatccaagtgccaa 8216725  T
Q  279 caaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 328  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  8216726 caaccccctgaatcaatagcaggcata-aatgctctttcgaacaaacaac 8216774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 464202 - 463857
Alignment:
Q  1 aagccaaagagaaaatataataaataaaaacaaacaggtataaagatcgagg-acattggacctaacctaggaaaactcagatgggaatacatcgtgaaa 99  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| || || |||||||| || | | || |||| ||| || | |||||||||| |||    
T  464202 aagccaaagagaaaatatactaaataaacacaaacaggtataaagaccgggggacattggatctgatccagaaaaattcaaatagaaatacatcgtaaaa 464103  T
Q  100 aatctatccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa------------------accatgttaca 181  Q
    || || | ||||||||| |  ||||||||||| ||||||||||| | |||||||   |||||| | |||||                  |||| ||||||    
T  464102 aaactgttcaagtggtataattctaatctatcctaacaaaaatatagtaatcacgagcgcaacccggcgaacccgcgtacgggcgcggaaccaagttaca 464003  T
Q  182 aaaaagtgtgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaa 281  Q
    |  ||| ||||||||||||||||| |||| |||| ||||||||||||    || | ||||||||| |||||||||||||||||||||||||| |||||||    
T  464002 attaagcgtgaaaagtggacatcctcatagaacagttagagtttaaaacc-aggctaatggattgcccgtcaacacggaaaccaatccaagtaccaacaa 463904  T
Q  282 ccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 328  Q
     |||||||||||| ||||| |||| |||  |||||||| ||||||||    
T  463903 gcccctgaatcaatagcaggcataaaatcatctttcgagcaaacaac 463857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 38002230 - 38002168
Alignment:
Q  166 gcgaaaccatgttacaaaaaagtgtgaaaagtggacatccacataaaacaattagagtttaaa 228  Q
    ||||||||| ||||||||||| | ||||||||| ||||| ||||| ||  |||||||||||||    
T  38002230 gcgaaaccaagttacaaaaaaatatgaaaagtgaacatctacatagaatcattagagtttaaa 38002168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 54 - 328
Target Start/End: Complemental strand, 32191606 - 32191313
Alignment:
Q  54 cattggacctaacctaggaa-aactcagatgggaatac-atcgtgaaaaatctatccaagtggtacagctctaatctatcataacaaaaatacactaatc 151  Q
    ||||||||||||||  |||| ||| || | |||||||| ||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||    
T  32191606 cattggacctaacccgggaataacccaaacgggaataccatcgtgataaatctgtccaagtggtacaactctaatctatcctaacaaaaatacactaatc 32191507  T
Q  152 actgacgcaacgcagc------------------gaaaccatgttacaaaaaa-gtgtgaaaagtggacatccacataaaacaattagagtttaaactat 232  Q
    ||||||||||| ||||                  |||||||  |||||||||| | |||||||||| ||||||||||| ||   ||||||||| ||  ||    
T  32191506 actgacgcaacccagcaaacccgcgtacatgcgtgaaaccagtttacaaaaaaagcgtgaaaagtgaacatccacatacaattgttagagttttaaa-at 32191408  T
Q  233 agacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 328  Q
    || ||||||||||| |||||||||||||| ||||| |||||| |||| ||||||||||||||| |||  ||| |||||||||||||||| ||||||    
T  32191407 aggcgaatggattgaccgtcaacacggaa-ccaattcaagtgacaactaccccctgaatcaactgcatgcatgtaatgctctttcgaactaacaac 32191313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 30892255 - 30892343
Alignment:
Q  261 aaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcgagg 347  Q
    |||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||||||||||| | |  |||||||||||||||    
T  30892255 aaccaatccaagtgccaacaaccccctgaatcaacaacatgcatacaatgctctttcgaacaaacaacgcgtaaaaactcagatcgagg 30892343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 316
Target Start/End: Complemental strand, 31304215 - 31304090
Alignment:
Q  189 gtgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctg 288  Q
    ||||||||||||||||  |||| |||| ||||||||||||||   ||| |||||||||  |||| ||||   |||||||||||||| |||||  ||||||    
T  31304215 gtgaaaagtggacatctgcatagaacagttagagtttaaactt--gacaaatggattgatcgtcgacacactaaccaatccaagtgtcaacagtcccctg 31304118  T
Q  289 aatcaacagcagacatataatgctcttt 316  Q
    |||||||||||  |||| |||| |||||    
T  31304117 aatcaacagcaagcataaaatgttcttt 31304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 30892130 - 30892194
Alignment:
Q  106 tccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa 170  Q
    ||||||||| ||| |||||||||||| |||||||||||||||||  |||| |||||| |||||||    
T  30892130 tccaagtggaacaactctaatctatcctaacaaaaatacactaactactggcgcaacccagcgaa 30892194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 592685 - 592724
Alignment:
Q  123 taatctatcataacaaaaatacactaatcactgacgcaac 162  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  592685 taatctatcataacaaaaatccactaatcacggacgcaac 592724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 181 - 328
Target Start/End: Original strand, 51663809 - 51663955
Alignment:
Q  181 aaaaaagtgtgaaaagtggacatccacataaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaaca 280  Q
    ||||||| ||||||||||||||| | |||| |||||||| ||| ||||   | ||||||||||||| |||||||||||  | |||||||||| ||| |||    
T  51663809 aaaaaagcgtgaaaagtggacattcgcatagaacaattaaagtataaaac-tcgacgaatggattggccgtcaacacgatatccaatccaagagcccaca 51663907  T
Q  281 accccctgaatcaacagcagacatataatgctctttcgaacaaacaac 328  Q
    | ||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  51663908 atcccctgaatcaacagtagacataaaatgctctttcgagcaaacaac 51663955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 23229369 - 23229212
Alignment:
Q  1 aagccaaagagaaaatataataaataaaaac-aaacaggtataaagatc--gaggacattggacctaacctaggaa-aactcagatgggaatacatcgtg 96  Q
    ||||||||||||||||||||||||||||||  |||||  || |||||||  | |||||||| |||||||  ||||| ||| || | ||||||| ||||||    
T  23229369 aagccaaagagaaaatataataaataaaaaagaaacaaatacaaagatcagggggacattgaacctaacacaggaataacccaaacgggaatatatcgtg 23229270  T
Q  97 aaaaatctatccaagtggtacagctctaatctatcataacaaaaatacactaatcactg 155  Q
    | ||| || || |||||| ||| |||||||||||   ||||||||||||||||||||||    
T  23229269 ataaacctgtc-aagtggaacaactctaatctattcaaacaaaaatacactaatcactg 23229212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 28421601 - 28421454
Alignment:
Q  9 gagaaaatataataaataaaaacaaacaggtataaaga-tcgagga-cattggacctaacctaggaa-aactcagatgggaatacatcgtgaaaaatcta 105  Q
    ||||||||||| |||||||||||||| |  |||||||| | ||| | |||| ||||| ||||||||| ||||||   || |||||| ||||| ||| |      
T  28421601 gagaaaatatattaaataaaaacaaagatatataaagactagagaaacattagacctgacctaggaataactcaagcggaaatacaacgtgataaaacag 28421502  T
Q  106 tccaagtggtacagctctaatctatcataacaaaaatacactaatcac 153  Q
    |||||||||  |  ||||||||||||||||||||||| ||||||||||    
T  28421501 tccaagtggatctactctaatctatcataacaaaaattcactaatcac 28421454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 51663716 - 51663779
Alignment:
Q  107 ccaagtggtacagctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa 170  Q
    |||||||| | | |||||||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  51663716 ccaagtggaataactctaatctatcctaataaaaatacactaatcactggcgcaacccagcgaa 51663779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 23006190 - 23006158
Alignment:
Q  121 tctaatctatcataacaaaaatacactaatcac 153  Q
    |||||||||||||||||||||| ||||||||||    
T  23006190 tctaatctatcataacaaaaattcactaatcac 23006158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 11203219 - 11203301
Alignment:
Q  236 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcg 318  Q
    ||||||||||  |||||||||||| |||||||||||||| ||||||||||||||| ||||| ||  ||||  |||||||||||    
T  11203219 cgaatggattagccgtcaacacggtaaccaatccaagtgtcaacaaccccctgaagcaacaacatgcataagatgctctttcg 11203301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 20118009 - 20118070
Alignment:
Q  91 atcgtgaaaaatctatccaagtggtacagctctaatctatcataacaaaaatacactaatca 152  Q
    ||||||| ||||| ||||||||||  || |||||||||||| |||||||||| |||||||||    
T  20118009 atcgtgataaatcaatccaagtggatcaactctaatctatcctaacaaaaattcactaatca 20118070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 28003022 - 28002982
Alignment:
Q  122 ctaatctatcataacaaaaatacactaatcactgacgcaac 162  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  28003022 ctaatctatcataacaaaaatccactaatcacggacgcaac 28002982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 31727454 - 31727504
Alignment:
Q  120 ctctaatctatcataacaaaaatacactaatcactgacgcaacgcagcgaa 170  Q
    |||||||||||| |||||||| | |||||||||| |||||||| |||||||    
T  31727454 ctctaatctatcctaacaaaagttcactaatcacagacgcaactcagcgaa 31727504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 30828 - 30776
Alignment:
Q  236 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctg 288  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||||| |||||    
T  30828 cgaatggattgaccgtcaacacggtaacaaatccaagtgccaacaactccctg 30776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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