View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7931_low_7 (Length: 385)
Name: NF7931_low_7
Description: NF7931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7931_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 30025981 - 30026119
Alignment:
| Q |
23 |
tgaagaaacaaagaaatgtagaaacaatctcaacaaagaaacaaagatgtagaattagttcaacaaagaaatgaagatgcaaaaacgagttcaccaagaa |
122 |
Q |
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| T |
30025981 |
tgaagaaacaaagaaatgtagaaacaagctcaacaaagaaacaaagatgtagaattagttcaacaaagaaatgaagatgcaaaaacgagttcaccaagaa |
30026080 |
T |
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| Q |
123 |
aacaagatgcaaaaacgagttcaacgaagacacataaat |
161 |
Q |
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| T |
30026081 |
aacaagatgcaaaaacgagttcaacgaagacacataaat |
30026119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 276 - 367
Target Start/End: Original strand, 30026234 - 30026325
Alignment:
| Q |
276 |
ttcgtttcagatgctttcttagtgatgtttcttctcctgaatgttaataaaacttcagtgaaatattgacaaatttaccttcagcagggaat |
367 |
Q |
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| T |
30026234 |
ttcgtttcagatgctttcttagtgatgtttcttctcctgaatgttaataaaacttcagtgaaatattgacaaatttaccttcagcagggaat |
30026325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 34283162 - 34283294
Alignment:
| Q |
23 |
tgaagaaacaaagaaatgtagaaacaatctcaacaaagaaacaaagatgtagaa-ttagttcaacaaagaaatgaagatgcaaaaacgagttc-accaag |
120 |
Q |
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||||||||||||||||||||||||| | ||||| || |||| |||||| |||| |||||||||| ||||||| |||||| |||||||||||| || ||| |
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| T |
34283162 |
tgaagaaacaaagaaatgtagaaacgagttcaacgaaaaaacgaagatgcagaaattagttcaacgaagaaattaagatggaaaaacgagttcaacaaag |
34283261 |
T |
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| Q |
121 |
aaaacaagatgcaaaaacgagttcaacgaagac |
153 |
Q |
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| T |
34283262 |
aaacgaagatgcaaaaacaagttcaacaaagac |
34283294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 34281826 - 34281781
Alignment:
| Q |
322 |
ataaaacttcagtgaaatattgacaaatttaccttcagcagggaat |
367 |
Q |
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||||| |||||||||| |||||||| |||||||||||||||||||| |
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| T |
34281826 |
ataaatcttcagtgaattattgacatatttaccttcagcagggaat |
34281781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 12723124 - 12723169
Alignment:
| Q |
322 |
ataaaacttcagtgaaatattgacaaatttaccttcagcagggaat |
367 |
Q |
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| T |
12723124 |
ataaaacttcaatgaattattgacatatttaccttcagcagggaat |
12723169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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