View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7932_high_1 (Length: 660)

Name: NF7932_high_1
Description: NF7932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7932_high_1
NF7932_high_1
[»] chr3 (1 HSPs)
chr3 (16-649)||(52828480-52829112)


Alignment Details
Target: chr3 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 16 - 649
Target Start/End: Original strand, 52828480 - 52829112
Alignment:
Q  16 caataataacatgcctccaaccacgtgaaatccaatatcaaactaaaccagctataatgcataaattgactaattaaaaacagtgtgcaaaaataagcac 115  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828480 caataataacttgtctccaaccacgtgaaatccaatatcaaactaaaccagctataatgcataaattgactaattaaaaacagtgtgcaaaaataagcac 52828579  T
Q  116 ttttctatagtactattctactaactactaatcagataccatacgttggtcctaatatcgttcatcatcaatctttgctaatttatgcaaataaagaatc 215  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828580 ttttctatagtactattgtactaactactaatcagataccatacgttggtcctaatatcgttcatcatcaatctttgctaatttatgcaaataaagaatc 52828679  T
Q  216 atactagtctcactgtgggggtacagtcgacaaataaagaaatgctacaaactccatagtgaaatggtggttaatataaacttcaaaaaagaacaataat 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828680 atactaatctcactgtgggggtacagtcgacaaataaagaaatgctacaaactccatagtgaaatggtggttaatataaacttcaaaaaagaacaataat 52828779  T
Q  316 atgaacattttccatctgaataagaaagttggagatctttagcttctagaccgttaaacttcaagcaaccctatgtctaatatatagggtaccaattaat 415  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828780 atgaacattttccatctgaata-gaaagttggagatctttagcttctagaccgttaaacttcaagcaaccctatgtctaatatatagggtaccaattaat 52828878  T
Q  416 caaatggtcaaacagaatgatgtcctgctttgctagagacttttttgtcaattccagcgagacattatagttttatcattctattgaaaatagtcactac 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828879 caaatggtcaaacagaatgatgtcctgctttgctagagacttttttgtcaattccagcgagacattatagttttatcattctattgaaaatagtcactac 52828978  T
Q  516 aaccactccatctggctgtaatttacacaaatatacttattgacaaatgagtttataagtacggctaatcacctattaacctaaacagttcatattttcc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828979 aaccactccatctggctgtaatttacacaaatatacttattgacaaatgagtttataagtacggctaatcacctattaacctaaacagttcatattttcc 52829078  T
Q  616 aggtttccatgtcagatccgcctctttcttctca 649  Q
    ||||||||||||||||||||||||||||||||||    
T  52829079 aggtttccatgtcagatccgcctctttcttctca 52829112  T

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