View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7932_high_9 (Length: 346)

Name: NF7932_high_9
Description: NF7932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7932_high_9
NF7932_high_9
[»] chr1 (13 HSPs)
chr1 (38-312)||(2011602-2011876)
chr1 (12-312)||(2006072-2006368)
chr1 (133-312)||(2010287-2010466)
chr1 (37-310)||(2019413-2019683)
chr1 (147-289)||(6601895-6602037)
chr1 (147-290)||(3218661-3218804)
chr1 (151-289)||(3361471-3361609)
chr1 (18-99)||(2010204-2010285)
chr1 (224-289)||(6592643-6592708)
chr1 (151-286)||(3372443-3372578)
chr1 (149-306)||(4323236-4323393)
chr1 (149-237)||(4335204-4335292)
chr1 (177-277)||(3345323-3345423)
[»] chr2 (5 HSPs)
chr2 (151-289)||(39273802-39273940)
chr2 (167-298)||(20934229-20934360)
chr2 (149-289)||(20952755-20952895)
chr2 (204-306)||(20926881-20926984)
chr2 (223-306)||(20923302-20923385)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 2011602 - 2011876
Alignment:
Q  38 cttagtttgtttacttattcttgtatgttatcttcgtttgaatatgaatgtatttatctaaaggcaggaaaaccatcagagtctagctgcctaataatga 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2011602 cttagtttgtttacttattcttgtatgttatcttcgtttgaatatgaatgtatttatctaaaggcaggaaaactatcagagtctagctgcctaataatga 2011701  T
Q  138 tatacgagaagccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgtttt 237  Q
    || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2011702 tagacgaggagccggatagaattagtgttttaccaggtgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtatttt 2011801  T
Q  238 atcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2011802 atcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatc 2011876  T

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Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 2006072 - 2006368
Alignment:
Q  12 attctacatacatggatgtacactaacttagtttgtttacttattcttgtatgttatcttcgtttgaatatgaatgtatttatctaaaggcaggaaaacc 111  Q
    |||||||||||||||||    ||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||||||||| | |||||    
T  2006072 attctacatacatggat----actaacttagtttgttttcttattcttgtatgttctcttcgtttgaatatggatatatttatctaaaggcaaggaaacc 2006167  T
Q  112 atcagagtctagctgcctaataatgatatacgagaagccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaatt 211  Q
    |||| |||||| | |||||| ||||||| ||| | |||||||||||||||||  ||||| || |||||||||||||  |||| |||||  ||||||||||    
T  2006168 atcaaagtctacccgcctaaaaatgatagacggggagccggatagaattagttatttactaggtgatgtaatagacaagattctgtcacacttgccaatt 2006267  T
Q  212 agggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacat 311  Q
    ||||| | ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||  ||||||||| ||||||||||    
T  2006268 agggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaataccaaatcttgtgtttgataaacaatgtgtctctgcaacat 2006367  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 133 - 312
Target Start/End: Original strand, 2010287 - 2010466
Alignment:
Q  133 aatgatatacgagaagccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagt 232  Q
    ||||||| ||||| |||||||||||||||||  |||||| | ||||||||||||||| ||||||| | ||||||| |||||||| |||||||||||||||    
T  2010287 aatgatagacgaggagccggatagaattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgttgtgagaacaagt 2010386  T
Q  233 gttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatc 312  Q
    |||||||  |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| |||||||||||    
T  2010387 gttttatgcaacaaatggaggtacaaatggaccacaataccaaatcttgtgtttgataaacaatgtgtctctgcaacatc 2010466  T

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Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 37 - 310
Target Start/End: Original strand, 2019413 - 2019683
Alignment:
Q  37 acttagtttgtttacttattcttgtatgttatcttcgtttgaatatgaatgtatttatctaaaggcaggaaaaccatcagagtctagctgcctaataatg 136  Q
    ||||||||||||| |  |||||||||||||  ||| |||||||||||||| | ||||| |||||||||||||||||||| |   || |  ||||| ||||    
T  2019413 acttagtttgttttccgattcttgtatgttccctttgtttgaatatgaatatttttatgtaaaggcaggaaaaccatcaaa---taccctcctaacaatg 2019509  T
Q  137 atatacgagaagccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttt 236  Q
    | | ||||| |||||||||||||||||  |||||| | ||||||||||||||| ||||||| | ||||||| |||||||| | |||||||||||||||||    
T  2019510 acagacgaggagccggatagaattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgctgtgagaacaagtgttt 2019609  T
Q  237 tatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaaca 310  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||| ||| ||  |||| |||| |||||||||    
T  2019610 tatccaacaaatggaggtacaaatgggccacaatgccaaatcttgtatttaataaacaacgtgtctctgcaaca 2019683  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 289
Target Start/End: Complemental strand, 6602037 - 6601895
Alignment:
Q  147 agccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaa 246  Q
    |||| ||||||||||||  |||||||| | || |||||||||  ||| | |||   |||||||||| ||| |  |||||||||||| ||||||||| |||    
T  6602037 agcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttgccaattaaggaagcagtgagaacaagtattttatcaaccaa 6601938  T
Q  247 atggaggtacaaatggatcacaataccaaatcttgtgtttgat 289  Q
    ||||||||||||||||  |||| | ||||||||||||||||||    
T  6601937 atggaggtacaaatgggccacacttccaaatcttgtgtttgat 6601895  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 290
Target Start/End: Complemental strand, 3218804 - 3218661
Alignment:
Q  147 agccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaa 246  Q
    |||||||||||||||||   ||||||| | |||||||||| | |||| | |||| ||||||||||||||| |  |||| |||||||||||| || |   |    
T  3218804 agccggatagaattagttgcttaccaggtcatgtaatagatcagattctctcatacttgccaattagggaagcagtgaaaacaagtgttttgtccagtga 3218705  T
Q  247 atggaggtacaaatggatcacaataccaaatcttgtgtttgatt 290  Q
    ||||||| | ||||||  |||| |||||||| ||||||||||||    
T  3218704 atggaggaataaatggcacacactaccaaatattgtgtttgatt 3218661  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 3361471 - 3361609
Alignment:
Q  151 ggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatgg 250  Q
    |||||||||||||   ||||||| | | |||||||||| ||| ||||||| ||||||||| | ||| |  |||||||||||| ||||||| | |||||||    
T  3361471 ggatagaattagttgcttaccagatcacgtaatagaccagatcttgtcatacttgccaatcaaggaagcagtgagaacaagtattttatccagcaaatgg 3361570  T
Q  251 aggtacaaatggatcacaataccaaatcttgtgtttgat 289  Q
    ||  ||||||||  |||  ||||||||||||| ||||||    
T  3361571 agtaacaaatggtacacgctaccaaatcttgtatttgat 3361609  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 2010204 - 2010285
Alignment:
Q  18 catacatggatgtacactaacttagtttgtttacttattcttgtatgttatcttcgtttgaatatgaatgtatttatctaaa 99  Q
    |||||| |||||||| |||||||| |||||||  |||||||||||||||  ||| |||||||||||||| ||||||| ||||    
T  2010204 catacaaggatgtacgctaacttaatttgtttcgttattcttgtatgttccctttgtttgaatatgaatatatttatttaaa 2010285  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 6592708 - 6592643
Alignment:
Q  224 agaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 289  Q
    ||||||||| ||||||| | ||| |||||||||||||||| |||| | ||||||||||||||||||    
T  6592708 agaacaagtattttatctaccaactggaggtacaaatggaccacacttccaaatcttgtgtttgat 6592643  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 286
Target Start/End: Original strand, 3372443 - 3372578
Alignment:
Q  151 ggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatgg 250  Q
    |||||||||||||   ||||||| | |||||||||| | |||| | |||  | |||||||||  || |  |||||||||||||||||||| | ||  |||    
T  3372443 ggatagaattagttgcttaccaggtcatgtaatagatcagattctctcactcatgccaattaaagaagcagtgagaacaagtgttttatccagcagctgg 3372542  T
Q  251 aggtacaaatggatcacaataccaaatcttgtgttt 286  Q
    ||| ||||||||  |||| |||||||||||||||||    
T  3372543 aggaacaaatggtacacactaccaaatcttgtgttt 3372578  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 306
Target Start/End: Complemental strand, 4323393 - 4323236
Alignment:
Q  149 ccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaat 248  Q
    |||||||||||||||   || |||| | |||||| ||| | |||| |||| | |||||| |||||||| |  ||||||||||||||||| || |  || |    
T  4323393 ccggatagaattagttggttgccaggtcatgtaacagatcagattatgtcttacttgccgattagggacgcagtgagaacaagtgttttgtcgaggaatt 4323294  T
Q  249 ggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgc 306  Q
    ||||| | ||||||   ||| | |||||||||||| |||||  |||||||||||||||    
T  4323293 ggaggaaaaaatggtatacacttccaaatcttgtgcttgatagacaatgtgtgtctgc 4323236  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 4335292 - 4335204
Alignment:
Q  149 ccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgtttt 237  Q
    |||||||||||||||   ||||||| | |||||||||||| |||| |||| |  ||||| |||||||| |  |||||||||||||||||    
T  4335292 ccggatagaattagttggttaccaggtcatgtaatagaccagattatgtcttatttgccgattagggacgcggtgagaacaagtgtttt 4335204  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 3345423 - 3345323
Alignment:
Q  177 atgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaa 276  Q
    ||||| |||||| |||| | || | ||||||||||||||| |  ||||||| ||||||| |||| || ||||||||  |||||| |  ||||||||||||    
T  3345423 atgtagtagaccagattctatcttacttgccaattagggaagcagtgagaataagtgttatatccaaaaaatggagaaacaaattgtacacaataccaaa 3345324  T
Q  277 t 277  Q
    |    
T  3345323 t 3345323  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 39273802 - 39273940
Alignment:
Q  151 ggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatgg 250  Q
    |||||||||||||   ||||| | | |||||||||| | |||| |||| ||||||||||||||||| |  ||||||||||||||||| || | | |||||    
T  39273802 ggatagaattagttgcttaccgggtcatgtaatagatcagattctgtcttgcttgccaattagggaagcagtgagaacaagtgttttgtccagccaatgg 39273901  T
Q  251 aggtacaaatggatcacaataccaaatcttgtgtttgat 289  Q
    ||||||||||||  |||| ||||||||||||||||||||    
T  39273902 aggtacaaatggtacacactaccaaatcttgtgtttgat 39273940  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 20934229 - 20934360
Alignment:
Q  167 ttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatca 266  Q
    ||||||| | |||||||||||| |||| || | | ||||||||||||||| |  |||||||||||||||||||| || ||||||||| ||||||||  ||    
T  20934229 ttaccaggtcatgtaatagaccagattctgacttacttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatggaggaacaaatggtaca 20934328  T
Q  267 caataccaaatcttgtgtttgattcacaatgt 298  Q
    || | ||||||||||||||||||  |||||||    
T  20934329 cactcccaaatcttgtgtttgatagacaatgt 20934360  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 20952755 - 20952895
Alignment:
Q  149 ccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaat 248  Q
    ||||||||||| |||   ||||||| | |||||||||| | |||| || | | ||||| |||||||||||  |||||||||||||||||||| |  ||||    
T  20952755 ccggatagaataagttgcttaccaggtcatgtaatagatcagattctgacttacttgcaaattagggatgcagtgagaacaagtgttttatctagaaaat 20952854  T
Q  249 ggaggtacaaatggatcacaataccaaatcttgtgtttgat 289  Q
    ||||| ||||||||| |||| | ||||||||||||||||||    
T  20952855 ggaggaacaaatggaacacacttccaaatcttgtgtttgat 20952895  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 20926881 - 20926984
Alignment:
Q  204 tgccaattagggatgttgtgagaacaagtgttttatc-aaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgt 302  Q
    ||||||||||||| |  | |||||||||||||||||| ||| ||||||||| ||||| ||  |||| ||||||||||||| ||||||   |||||||| |    
T  20926881 tgccaattagggaagcagcgagaacaagtgttttatctaaaaaaatggaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtct 20926980  T
Q  303 ctgc 306  Q
    ||||    
T  20926981 ctgc 20926984  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 20923302 - 20923385
Alignment:
Q  223 gagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgc 306  Q
    |||||||||||||||||| |||||||||||| | ||||||  ||||  |||  |||||||||| |||  ||||||||| |||||    
T  20923302 gagaacaagtgttttatctaacaaatggaggaaaaaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgc 20923385  T

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