View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7932_low_11 (Length: 330)
Name: NF7932_low_11
Description: NF7932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7932_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 1534682 - 1534989
Alignment:
| Q |
8 |
ggagtgtaattcaaacatatttgaggagtggagattttaatttactctatcaattaattaatttagatgccggtatattggtacactcgaattcttgtac |
107 |
Q |
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| T |
1534682 |
ggagtgtaattcaaacatatttgaggagaggagattttaatttactctatcaattaattaatttagatgccggtatattggtacactcgaattcttgtac |
1534781 |
T |
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| Q |
108 |
cgtaaaaattgttttgaaagatagtttaacaatgaaaatcctcatcttcactgggtgcagcgtgactattattcagtctcatgagaagtcaagaatcata |
207 |
Q |
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| T |
1534782 |
cgtaaaaattgttttgaaagatagtttaacaatgaaaatcctcatcttcactaggtgcagcgtgactattattcagtctcatgagaagtcaagaatcata |
1534881 |
T |
|
| Q |
208 |
atattagttgatgatttgaaaaagcctctagaatctttgtctctaacaatggaattgtttttctttcaaaaactatacctttggttcacccaaaaactat |
307 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1534882 |
atattagttgatgatttgaaaaagcctctaaagtctttgtctctaacaatggaattttttttctttcaaaaactatacctttggttcacccaaaaactat |
1534981 |
T |
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| Q |
308 |
atactata |
315 |
Q |
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|||||||| |
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| T |
1534982 |
atactata |
1534989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 2790124 - 2790075
Alignment:
| Q |
5 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactc |
54 |
Q |
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| T |
2790124 |
aggggagtgtaattcaaacatctttgaggagaggagagtgtaatttactc |
2790075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 38790771 - 38790820
Alignment:
| Q |
5 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactc |
54 |
Q |
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| T |
38790771 |
aggggagtgtaattcaaacatctttgaggggaggagaatgtaatttactc |
38790820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 36605431 - 36605483
Alignment:
| Q |
5 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactctat |
57 |
Q |
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| T |
36605431 |
aggggagtgtaattcaaacatctttgaggggaggagagtgtaatttactctat |
36605483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 33113156 - 33113105
Alignment:
| Q |
5 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactcta |
56 |
Q |
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||||||||||||||||||||| ||||||| |||| || | |||||||||||| |
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| T |
33113156 |
aggggagtgtaattcaaacatttttgaggggtggggagtgtaatttactcta |
33113105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 7478713 - 7478666
Alignment:
| Q |
8 |
ggagtgtaattcaaacatatttgaggagtggagattttaatttactct |
55 |
Q |
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| T |
7478713 |
ggagtgtaattcaaacatctttgaggagaggagaatgtaatttactct |
7478666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 615480 - 615428
Alignment:
| Q |
3 |
gaaggggagtgtaattcaaacatatttgaggagtggagattttaatttactct |
55 |
Q |
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| T |
615480 |
gaaggggagtgtaattcaagcatctttgaggggaggagagtgtaatttactct |
615428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 6232465 - 6232413
Alignment:
| Q |
5 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactctat |
57 |
Q |
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||||||||||||||||| ||| ||||||| | ||||| | ||||||||||||| |
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| T |
6232465 |
aggggagtgtaattcaagcatctttgaggggaggagagtgtaatttactctat |
6232413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 41262790 - 41262842
Alignment:
| Q |
5 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactctat |
57 |
Q |
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||||||||||||||||| ||||||||||||| || | | ||||||||||||| |
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| T |
41262790 |
aggggagtgtaattcaagcatatttgaggagagggaagtataatttactctat |
41262842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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