View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7932_low_12 (Length: 321)
Name: NF7932_low_12
Description: NF7932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7932_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 5727694 - 5727829
Alignment:
| Q |
186 |
catcatctaaaatcataaatccaaaaatcaagaactcagacacctgcaaactcatgaaacnnnnnnncataaatccaacatcaaaatcattcatcatctt |
285 |
Q |
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| T |
5727694 |
catcatctaaaatcataaatccaaaaatcaagaactcagacacccgcaaactcagaaaacaaaaaaacataaattcaacatcaaaatcattcatcatctt |
5727793 |
T |
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| Q |
286 |
ctgatcactacaccactaccattaagaacaatacct |
321 |
Q |
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| T |
5727794 |
ctgatcactacaccactaccattaagaacaatacct |
5727829 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 5727608 - 5727665
Alignment:
| Q |
88 |
gatgatcattggatcatgcatatctattttaccgtgaaccaccaacgactaatttatt |
145 |
Q |
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| T |
5727608 |
gatgatcactggatcatgcatatctattttaccgtgaaccaccaacgactaatttatt |
5727665 |
T |
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