View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7932_low_2 (Length: 601)
Name: NF7932_low_2
Description: NF7932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7932_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 204 - 586
Target Start/End: Complemental strand, 25363553 - 25363176
Alignment:
| Q |
204 |
ttatgaaggtgaaaaggtgagaagtattttaccttggcttctatcagtgtcaactgaattcaaagcatatatannnnnnnnnnaaagagagttcagagca |
303 |
Q |
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| T |
25363553 |
ttatgaaggtgaaaaggtgagaagtattt-accttggcttctatcggtgtcaactgaattcaaagcatatgttttttttttttaaagagagttcagagca |
25363455 |
T |
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| Q |
304 |
tagttgtgtaatgaagtatttatcttatacaaatatcatttctcttttaaaaatgacattgatcaatgattggtgaaaacactgaaaaaatgtaagttat |
403 |
Q |
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| T |
25363454 |
tagttgtgtaatgaagtatttatcttatacaaatatcatttctcttttaaaaatgacattgatcaatgattggtgaaaacactgaaaaaatgtaagttat |
25363355 |
T |
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| Q |
404 |
gcttaatttatttaattataatggacatattttctcaagaaatttattaaccaaccaacaagcacaaagtcatcagaatttggtttataacaggacatgg |
503 |
Q |
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| T |
25363354 |
gcttaatttatttaaatataatggacatattttctcaagaaatttattaaccaaccaacaagcacaaagtcatcagaatttggtttataacaggacatgg |
25363255 |
T |
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| Q |
504 |
ttgctcactaaaccaaccatacagaattggggtcaacaattgcatgtctagccagaaaatgggcagcccaattcccatctctg |
586 |
Q |
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| T |
25363254 |
ttgctcactaa----accatacagaattggggtcaacaattgcatgtctagccagaaaatgggcagcccaattcccatctctg |
25363176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 25363805 - 25363616
Alignment:
| Q |
22 |
aagccgaacctatcttatgcacttcaacttcaagatctttcaagttgctccaggttacaacaggatcgcaaattttcgtattata-------aacctaat |
114 |
Q |
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| T |
25363805 |
aagccgaacctatcttatgcacttcaacttcaagatctttcaagttgctccaggttacaacaggatcgcaa-ttttcgaattatataatctaaacctagt |
25363707 |
T |
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| Q |
115 |
tcaaattatataatccgaacaaagggtattttgaaaaacaaaataggacgcgcgagaatagaatatgatgagaaaagtaatagtcaaaatt |
205 |
Q |
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| T |
25363706 |
tcaaattatataatccgaacaaaaggtattttggaaaacaaaataggacgcgcgagaatagaatatgatgaaaaaagtaatagtcaaaatt |
25363616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 14913236 - 14913290
Alignment:
| Q |
119 |
attatataatccgaacaaagggtattttgaaaaacaaaataggacgcgcgagaatag |
175 |
Q |
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| T |
14913236 |
attatataatccgaacaaaaggtattttgagaa--aaaatagggcgcgcgagaatag |
14913290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 32421786 - 32421884
Alignment:
| Q |
106 |
aaacctaattcaaattatataatccgaacaaagggtattttg--aaaaacaaaataggacgcgcgagaatagaatatgatgagaaaagtaatagtcaaa |
202 |
Q |
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| T |
32421786 |
aaacctagttcagattatataattcgaacaaagggtattttggaagaaataaaatagggcgcgcaagaatatcataaggtgaaaaaagtaatagtcaaa |
32421884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 34490921 - 34490841
Alignment:
| Q |
119 |
attatataatccgaacaaagggtattttgaaaaacaaaataggacgcgcgagaatagaatatgatgagaaaagtaatagtc |
199 |
Q |
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| T |
34490921 |
attacataatccgaaccagaggtattttgagaaaaaaaacaaggcgcgcgagaataacatagggtgagaaaagtaatagtc |
34490841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 42012197 - 42012117
Alignment:
| Q |
114 |
ttcaaattatataatccgaacaaagggtattttgaaaaacaaaataggacgcgcgagaatagaatatgatgagaaaagtaa |
194 |
Q |
| |
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|||||||| || ||||||||||||||||||||| |||| | ||||||||| ||||||||| ||||| || |||||||| |
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| T |
42012197 |
ttcaaattttagaatccgaacaaagggtattttcgaaaaaattataggacgcacgagaatagcatatggtgcaaaaagtaa |
42012117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 25011577 - 25011609
Alignment:
| Q |
114 |
ttcaaattatataatccgaacaaagggtatttt |
146 |
Q |
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| T |
25011577 |
ttcaaattatacaatccgaacaaagggtatttt |
25011609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 33555592 - 33555677
Alignment:
| Q |
114 |
ttcaaattatataatccgaacaaaggg-tattttgaaaaacaaaataggacgcgcgagaatagaatatgatgagaaaagtaatagtc |
199 |
Q |
| |
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|||| |||||| |||| |||||||||| |||||| || || |||||||||||| | ||||||||||| ||||| |||| |||||||| |
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| T |
33555592 |
ttcagattatagaatctgaacaaaggggtattttcaagaaaaaaataggacgctcaagaatagaata-gatgaaaaaaataatagtc |
33555677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 359
Target Start/End: Complemental strand, 11635633 - 11635605
Alignment:
| Q |
331 |
tacaaatatcatttctcttttaaaaatga |
359 |
Q |
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| T |
11635633 |
tacaaatatcatttctcttttaaaaatga |
11635605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 26345658 - 26345686
Alignment:
| Q |
119 |
attatataatccgaacaaagggtattttg |
147 |
Q |
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| T |
26345658 |
attatataatccgaacaaagggtattttg |
26345686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 25967276 - 25967330
Alignment:
| Q |
26 |
cgaacctatcttatgcacttcaacttcaagatctttcaagttgctccaggttaca |
80 |
Q |
| |
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|||||||| ||||| ||||||||||||||||| |||||| ||||||| |||||| |
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| T |
25967276 |
cgaacctaatttatgtacttcaacttcaagatccttcaaggtgctccatgttaca |
25967330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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