View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7932_low_3 (Length: 561)
Name: NF7932_low_3
Description: NF7932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7932_low_3 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 31 - 561
Target Start/End: Complemental strand, 1181060 - 1180533
Alignment:
| Q |
31 |
aaactctaacctcttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttcggaaac |
130 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1181060 |
aaactccaatctcttaagtcgaacacttgaaatatcaatcttcttaggcattttacaattgtttaatttcaaactctcaagaaaagggaatttcggaaac |
1180961 |
T |
|
| Q |
131 |
gatttaacaaaccacttgtctgatgaaaaagtgctcgtcacagactgcaagtttaactcttttaaatttctacacctatcaaaatcaatcttagttggtg |
230 |
Q |
| |
|
||| || ||||||||||| || |||| || ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1180960 |
aattcaagaaaccacttgtttgttgaa---gtactctccacagaccacaagtataactcttttaaatttctacacctatcaaaatcaatcttagatggtg |
1180864 |
T |
|
| Q |
231 |
taccgcaattataaggatagtaacaaaaattctcaagactcgaggcatcaatagaaacataatttattcctgtaacatcaacgctcttgagcttttgtag |
330 |
Q |
| |
|
|||| |||| | | || ||||||||||||||||||||| || |||||||||||||||| | |||| ||| ||||||||| |||||||| |||||||| |
|
|
| T |
1180863 |
caccgtaattcttggtattgtaacaaaaattctcaagacttgaagcatcaatagaaacatcttgtattgctgaaacatcaacactcttgagattttgtag |
1180764 |
T |
|
| Q |
331 |
accactaatgctcacatactccatatcccttgtgccaccaccagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaagat |
430 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180763 |
accactaatgctcacatactccatataccttgtgccaccaccagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaagag |
1180664 |
T |
|
| Q |
431 |
atgagttggttaattgcatgttcatctccaaaaagtacacgccttagtgacaattccctcaaagagaaaaacttgatcgaataattcatgaatactggat |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180663 |
atgagttggttaattgcatgttcatctccaaaaagtacacgcgttagtgacaattccctcaaagagaaaaacttgatcgaataattcatgaatactggat |
1180564 |
T |
|
| Q |
531 |
caatcttgatatgcccactcaacaccaactt |
561 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |
|
|
| T |
1180563 |
caatcttgatattcccctgcaacaccaactt |
1180533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 38 - 537
Target Start/End: Complemental strand, 1186430 - 1185922
Alignment:
| Q |
38 |
aacctcttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttcggaaacgatttaa |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||| || |
|
|
| T |
1186430 |
aacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaattcaa |
1186331 |
T |
|
| Q |
138 |
caaaccacttgtctgatgaaaaa-gtgctcgtcacagactgcaagtttaactcttttaaatttctacacctatcaaaatcaatcttagttggtgtaccgc |
236 |
Q |
| |
|
||||||||||| || ||||||| || |||| ||||||| ||| ||||||||| |||||||| |||||||||| ||| || ||| |||| |||| |
|
|
| T |
1186330 |
gaaaccacttgt-tggtgaaaaaagtactcgccacagacctcaaaaataactctttaaaatttctgcacctatcaatatcgataatagatggtacaccgt |
1186232 |
T |
|
| Q |
237 |
aattataa------ggatagtaacaaaaattctcaagactcgaggcatcaatagaaacataatttattcctgtaacatcaacgctcttgagcttttgtag |
330 |
Q |
| |
|
|||| | | ||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
1186231 |
aattttgattaccaggagaataacataaattctcaagactcgaggcatcaatagaaacatattttattcctgaaacatcaacactcttgagcttttgtag |
1186132 |
T |
|
| Q |
331 |
accactaatgctcacatactccata---tcccttgtgccaccaccagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaa |
427 |
Q |
| |
|
||||||||| || | | ||| ||| ||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
1186131 |
accactaattcttaaagacttcattggctcccttgtgccaccaccagaacttagcaccttacaggagtccaaagttatatattcaatcaaatgacaaaaa |
1186032 |
T |
|
| Q |
428 |
gatatgagttggttaattgcatgttcatctccaaaaagtacacgccttagtgacaattccctcaaagagaaaaacttgatcgaataattcatgaatactg |
527 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||| || |||| |||| |||||| || |
|
|
| T |
1186031 |
gagatgaggtggttgattgcatgttcatctaccaaaagtacatgccttagtgacaattccctcaatgagaaaaactttattgaatgattcgtgaatattg |
1185932 |
T |
|
| Q |
528 |
gatcaatctt |
537 |
Q |
| |
|
|||||||||| |
|
|
| T |
1185931 |
gatcaatctt |
1185922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 541
Target Start/End: Complemental strand, 10202870 - 10202788
Alignment:
| Q |
459 |
caaaaagtacacgccttagtgacaattccctcaaagagaaaaacttgatcgaataattcatgaatactggatcaatcttgata |
541 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
10202870 |
caaaaagtactcgccttagtgacaataccctcaatgagaaaaacttgattgaataattcatgattattggatcaatcttgata |
10202788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 10202969 - 10202874
Alignment:
| Q |
56 |
cttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttcggaaacgatttaacaaaccacttgtct |
151 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||| | |||||||||||||||||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
10202969 |
cttgaaatatcaatcttttcaggcatgtcacaagaatttaaaataaaactctcaagaaaagggaatttcggaaacaattcaagaaaccacttgtct |
10202874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 49610710 - 49610642
Alignment:
| Q |
397 |
caaagttatatattcaatcaaaggacaaaaagatatgagttggttaattgcatgttcatctccaaaaag |
465 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| || | ||||||||| |||| ||| ||||| |
|
|
| T |
49610710 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcatgctcatttcccaaaag |
49610642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 49611064 - 49610983
Alignment:
| Q |
43 |
cttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttc |
124 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||| |||| |||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
49611064 |
cttaagttgaacacttgaaatattaatcgtctcagacattgtgcaattggcaaatttcaatatctcaaggaaagggaatttc |
49610983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 43 - 325
Target Start/End: Complemental strand, 5175023 - 5174741
Alignment:
| Q |
43 |
cttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttcggaaacgatttaacaaac |
142 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| | ||| ||||||| ||||||||||||||||| ||||| ||||| |||||| || || |||| |
|
|
| T |
5175023 |
cttaagttgaacacttgaaatattaatcttctcggacatagtgcaattgtccaatttcaaactctcaaggaaaggaaatttaggaaacagttcaagaaac |
5174924 |
T |
|
| Q |
143 |
cacttgtctgatgaaaaag-tgctcgtcacagactgcaagtttaactcttttaaatttctacacctatcaaaatcaatcttagttggtgtaccgcaatta |
241 |
Q |
| |
|
|| ||||| | ||| || | ||||| ||| |||| ||||||||||| |||||||||| | ||||| ||||||||||||||| ||||| | ||| | |
|
|
| T |
5174923 |
catttgtc-ggtgataatgatgctcatcaaagacaacaagtttaacttttttaaatttttgcacctttcaaaatcaatcttaaatggtgcgtcaaaatca |
5174825 |
T |
|
| Q |
242 |
taaggatagtaacaaaaattctcaagactcgaggcatcaatagaaacataatttattcctgtaacatcaacgctcttgagcttt |
325 |
Q |
| |
|
|||| | ||||||||||||||||||| || |||||||||| |||| | | ||||||| ||||||||| |||| |||||| |
|
|
| T |
5174824 |
ccaggacaataacaaaaattctcaagacacggggcatcaatataaacctcttgtattccttgaacatcaactgtcttcagcttt |
5174741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 5193913 - 5193826
Alignment:
| Q |
43 |
cttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttcggaaac |
130 |
Q |
| |
|
||||||| || ||||||||||||||||| |||| | |||| ||| ||||| ||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
5193913 |
cttaagttgatcacttgaaatatcaatcctctcggccattgtacagttgttcaatttcaaactctcaaggaaaggaaattttggaaac |
5193826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 5203791 - 5203730
Alignment:
| Q |
397 |
caaagttatatattcaatcaaaggacaaaaagatatgagttggttaattgcatgttcatctc |
458 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| || | ||||||||||||||||| |
|
|
| T |
5203791 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgctcaattgcatgttcatctc |
5203730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 5183609 - 5183535
Alignment:
| Q |
43 |
cttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagg |
117 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||| ||||| ||||| | ||||| ||||||||||| ||||| |
|
|
| T |
5183609 |
cttaagttgaacacttgaaatattaatcgtctcagccattttacaataatgcaattttaaactctcaaggaaagg |
5183535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 5204172 - 5204063
Alignment:
| Q |
43 |
cttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttcggaaacgatttaacaaac |
142 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||| ||| ||||||||| || |||||||||||||| ||||| ||||| | |||| || || |||| |
|
|
| T |
5204172 |
cttaagttgaacacttgaaatattaatcctctcgaacatcctacaattgttcaacttcaaactctcaaggaaaggaaattttgaaaacagttcaagaaac |
5204073 |
T |
|
| Q |
143 |
cacttgtctg |
152 |
Q |
| |
|
|| ||||||| |
|
|
| T |
5204072 |
catttgtctg |
5204063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 6230229 - 6230168
Alignment:
| Q |
397 |
caaagttatatattcaatcaaaggacaaaaagatatgagttggttaattgcatgttcatctc |
458 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||| ||||| || | |||||||||||| |||| |
|
|
| T |
6230229 |
caaagttatatgttcaattaaaggacaacaagaaatgagatgttcaattgcatgttcgtctc |
6230168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 5170822 - 5170742
Alignment:
| Q |
43 |
cttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaattt |
123 |
Q |
| |
|
||||||| ||||||||||||||| |||| | || | ||||| ||||| | |||||||| |||||||| ||||||||||| |
|
|
| T |
5170822 |
cttaagttgaacacttgaaatattaatcctttcggacattttgcaattttgcaatttcaacctctcaaggaaagggaattt |
5170742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 8552671 - 8552780
Alignment:
| Q |
43 |
cttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttcggaaacgatttaacaaac |
142 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||| |||| || ||| |||||||| |||||||| ||||||||||||| |||| ||| || |||| |
|
|
| T |
8552671 |
cttaagttgaacacttgaaatattaatcgtctcagacattgtgcatttgacaaatttcaatctctcaaggaaagggaatttcgaaaacaattcaagaaac |
8552770 |
T |
|
| Q |
143 |
cacttgtctg |
152 |
Q |
| |
|
|| ||||||| |
|
|
| T |
8552771 |
catttgtctg |
8552780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 533
Target Start/End: Original strand, 8553025 - 8553161
Alignment:
| Q |
397 |
caaagttatatattcaatcaaaggacaaaaagatatgagttggttaattgcatgttcatctccaaaaagtacacgccttagtgacaattccctcaaagag |
496 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||| ||||| || | |||||||||||||||| | ||||| ||| || | ||||||| | ||||| || |
|
|
| T |
8553025 |
caaagttatatgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgttcatcttccaaaagaacaatccacaatgacaatactctcaatgaa |
8553124 |
T |
|
| Q |
497 |
aaaaacttgatcgaataattcatgaatactggatcaa |
533 |
Q |
| |
|
|||||||| || || | |||||||||| || |||||| |
|
|
| T |
8553125 |
aaaaacttaattgactgattcatgaatgcttgatcaa |
8553161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 5177519 - 5177432
Alignment:
| Q |
43 |
cttaagtcgaacacttgaaatatcaatcttctcaggcatttcacaattgtttaatttcaaactctcaagaaaagggaatttcggaaac |
130 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||| ||| ||| |||| |||||||||||| ||||| ||||| |||||| |
|
|
| T |
5177519 |
cttaagttgaacacttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaac |
5177432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 523
Target Start/End: Complemental strand, 5177201 - 5177075
Alignment:
| Q |
397 |
caaagttatatattcaatcaaaggacaaaaagatatgagttggttaattgcatgttcatctccaaaaagtacacgccttagtgacaattccctcaaagag |
496 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| || | |||||||| ||| |||| | |||| ||| || | | |||||| | || || ||| |
|
|
| T |
5177201 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcattttcgtctctagaaaggacatgcttcaatgacaaaactcttaatgag |
5177102 |
T |
|
| Q |
497 |
aaaaacttgatcgaataattcatgaat |
523 |
Q |
| |
|
||||| || || |||| |||||||||| |
|
|
| T |
5177101 |
aaaaatttaattgaatgattcatgaat |
5177075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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