View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7932_low_9 (Length: 354)
Name: NF7932_low_9
Description: NF7932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7932_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 17811630 - 17811302
Alignment:
| Q |
18 |
agcttgcttgtaacagttcaactctgatctctccttctgatagtaatcgccacggccaaggttattttggaagccccaaaatgcttcatttcaaattaat |
117 |
Q |
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| T |
17811630 |
agcttgcttgtaagagttcaactctgatctctccttctgatagtaatcgccacggccaaggttattttggaagccccaaaatgcttcatttcaaattcat |
17811531 |
T |
|
| Q |
118 |
aattcaatggctgcttcaatttgttgatttccaacttatttcttgaagtaaggagcatgtcatcaacatagagaagtatgtacacatgatctccaacttc |
217 |
Q |
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| T |
17811530 |
aattcaattgctgcttcaatttgttgatttccaacttatttcttgaagtaaggagtatgtcatcaacgtagagaagtaagta-acctgatctccaacttc |
17811432 |
T |
|
| Q |
218 |
tgattttctcatgtatacacaactatcatgtttgctctatgttaaacataaaacaatcaaacctcatgtaccattgtcttggctaatatagtattggtaa |
317 |
Q |
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| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17811431 |
taatttcctcatgcatacacaactatcatgtttgctctatgttaaacataaaacaatcaaccctcatgtaccattgtcttggctaatatagtattggtaa |
17811332 |
T |
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| Q |
318 |
tgtgacatgtattcttttagagtattatct |
347 |
Q |
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||||||||||||||||||||| ||| |||| |
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| T |
17811331 |
tgtgacatgtattcttttagaatataatct |
17811302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 17824559 - 17824241
Alignment:
| Q |
18 |
agcttgcttgtaacagttcaactctgatctctccttctgatagtaatcgccacggccaaggttattttggaagccccaaaatgcttcatttcaaattaat |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
17824559 |
agcttgcttgtaacagttcaactttgatctctccttctgatagtaatcgccacagccaaggttattttggaatcccctaaatgcttcatttcaaattcat |
17824460 |
T |
|
| Q |
118 |
aattcaatggctgcttcaatttgttgatttccaacttatttcttgaagtaaggagcatgtcatcaacatagagaagtatgtacacatgatctccaacttc |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||| |
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| T |
17824459 |
aattcaactgctgcttcaatttgttgatttccaacttatttcttgaagtaaggagcatgtcatcaacatagagaagcaagta-acctgatctccaacttc |
17824361 |
T |
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| Q |
218 |
tgattttctcatgtatacacaactatcatgtttgctctatgttaaacataaaacaatcaaacctcatgtaccattgtcttggctaatatagtattggtaa |
317 |
Q |
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||||||||||||| | |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||| |||| |
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| T |
17824360 |
tgattttctcatgcacacacaattatcatgtttgctctatgttaaaaataaaataatcaaacctcatgtaccatcgtcttggct-atatagtattcgtaa |
17824262 |
T |
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| Q |
318 |
tgtgacatgtattcttttaga |
338 |
Q |
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||||| ||||||||||||||| |
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| T |
17824261 |
tgtgaaatgtattcttttaga |
17824241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 45270846 - 45270950
Alignment:
| Q |
120 |
ttcaatggctgcttcaatttgttgatttccaacttatttcttgaagtaaggagcatgtcatcaacatagagaagtatgtacacatgatctccaacttctg |
219 |
Q |
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|||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||| |
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| T |
45270846 |
ttcaattgttgcttcaatttgttgatttccaacttattctttgaaataaggagcatgtcatcaacatagagaagtaaataaacatgatctccatcttctg |
45270945 |
T |
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| Q |
220 |
atttt |
224 |
Q |
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||||| |
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| T |
45270946 |
atttt |
45270950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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