View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7933_high_1 (Length: 531)
Name: NF7933_high_1
Description: NF7933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7933_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 116 - 515
Target Start/End: Original strand, 10215405 - 10215803
Alignment:
| Q |
116 |
actttagatgaatcaaatccttggcacttattttttatattatttagaagtaaaagactaaataacacataaatctttagttgtagacttgtagagcatc |
215 |
Q |
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| T |
10215405 |
actttagatgaatcaaatccttggcacttattttttatattatttagaagtaaaagactaaataacacataaatctttagttgtagacttgtagagcatc |
10215504 |
T |
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| Q |
216 |
atcatcttttctttctttcaatattttgagtagaaactctcctcaggtgagtttttcttgtcctcaacattttattaccccaccatatatttcgacagca |
315 |
Q |
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| T |
10215505 |
atcatcttttctttctttcaatattttgagtagaaattctcctcaggtgagtttt-cttgtcctcaacattttattatcccaccatatatttcgacagca |
10215603 |
T |
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| Q |
316 |
gaataccctattttgtcatgtccaatgttaacatgcgaaatgactagtgccaagagtaacattgtattgcagaaaccactatctccagaatgttactgat |
415 |
Q |
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| T |
10215604 |
gaataccctattttgtcatgtccattgttaacatgcgaaatgactagtgccaagagtaacattgtattgcagaaaccactatctccagaatgttactgat |
10215703 |
T |
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| Q |
416 |
tatcatataactaatcattattatcagtaaatcaagtcaacatatgtctatgaagttatgcaatcatctcaagactaattaatcggcttaaacatattat |
515 |
Q |
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| T |
10215704 |
tatcatataactaatcattattatcaataaatcaagtcaacataggtctatgaagttatgcaatcatctcaagactaattaatcagcttaaacatattat |
10215803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 10215301 - 10215381
Alignment:
| Q |
21 |
agttttaaattgatcttttatgtaagtaaaaaagtgcatctagtctttaagtcacaaaatatatataccattatactctaa |
101 |
Q |
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| T |
10215301 |
agttttaaattgatcttttatgtaagtaaaaaagtgcatctagtctttaagtcacaaaatatatataccattatactctaa |
10215381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 313 - 487
Target Start/End: Complemental strand, 13854918 - 13854744
Alignment:
| Q |
313 |
gcagaataccctattttgtcatgtccaatgttaacatgcgaaatgactagtgccaagagtaacattgtattgcagaaaccactatctccagaatgttact |
412 |
Q |
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| T |
13854918 |
gcagaataccctcttttgtcctggccattgttaacatacgaaatgactagtgctaagaataacatggcattgcaaaaactactatctccggaacgttact |
13854819 |
T |
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| Q |
413 |
gattatcatataactaatcattattatcagtaaatcaagtcaacatatgtctatgaagttatgcaatcatctcaa |
487 |
Q |
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| T |
13854818 |
gattatcaaataacaaatcattgtcatccataaatcaagtcagcattggtctatgaagttatgctatcatttcaa |
13854744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 10211852 - 10211960
Alignment:
| Q |
304 |
atttcgacagcagaataccctattttgtcatgtccaatgttaacatgcgaaatgactagtgccaagagtaacattgtattgcagaaaccactatctccag |
403 |
Q |
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| T |
10211852 |
atttcgacagcagaataccctcttttgtcctggccattgttaacatgcaaaattactagtgttaagagtaaaatggtattgcagaaaccaccatctccag |
10211951 |
T |
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| Q |
404 |
aatgttact |
412 |
Q |
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| T |
10211952 |
aatgttact |
10211960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 10104298 - 10104247
Alignment:
| Q |
443 |
taaatcaagtcaacatatgtctatgaagttatgcaatcatctcaagactaat |
494 |
Q |
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| T |
10104298 |
taaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaat |
10104247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 10107778 - 10107727
Alignment:
| Q |
443 |
taaatcaagtcaacatatgtctatgaagttatgcaatcatctcaagactaat |
494 |
Q |
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| T |
10107778 |
taaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaat |
10107727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 10104401 - 10104351
Alignment:
| Q |
347 |
catgcgaaatgactagtgccaagagtaacattgtattgcagaaaccactat |
397 |
Q |
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| T |
10104401 |
catgccaaatgactagtgctaagagtaacatggtattgcagaaactactat |
10104351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 10099175 - 10099111
Alignment:
| Q |
215 |
catcatcttttctttctttcaatattttgagtagaaactctcctcaggt--gagtttttcttgtcct |
279 |
Q |
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| T |
10099175 |
catcatcttttcgttcttctaatatt--gagtagaaactctcctcaggtgagagtttttcttgtcct |
10099111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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